Wall clock time and date at job start Tue Mar 31 2020 13:40:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00347 * 2 1 3 5 5 C 1.50708 * 109.47141 * 239.99887 * 2 1 3 6 6 C 1.33811 * 124.51992 * 60.00235 * 5 2 1 7 7 C 1.37473 * 115.10059 * 180.02562 * 6 5 2 8 8 C 1.36641 * 113.29683 * 359.97438 * 7 6 5 9 9 C 1.46587 * 125.45984 * 180.02562 * 8 7 6 10 10 O 1.21705 * 119.99461 * 0.02562 * 9 8 7 11 11 N 1.34775 * 120.00257 * 179.97438 * 9 8 7 12 12 C 1.46497 * 119.99950 * 180.02562 * 11 9 8 13 13 C 1.53004 * 109.46731 * 180.02562 * 12 11 9 14 14 H 1.09001 * 112.96464 * 53.32333 * 13 12 11 15 15 C 1.53952 * 113.76441 * 184.99519 * 13 12 11 16 16 C 1.53953 * 86.28336 * 137.90876 * 15 13 12 17 17 N 1.47571 * 86.12046 * 336.39293 * 16 15 13 18 18 C 1.36936 * 134.49361 * 204.63969 * 17 16 15 19 19 H 1.08004 * 119.99695 * 179.97438 * 18 17 16 20 20 C 1.38810 * 120.00306 * 0.02562 * 18 17 16 21 21 N 1.31622 * 119.99614 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00196 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47013 * 60.00235 * 22 20 18 24 24 H 1.48500 * 109.46810 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.47144 * 299.99889 * 22 20 18 26 26 S 1.70616 * 124.52248 * 239.69966 * 5 2 1 27 27 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 28 28 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 29 29 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 31 31 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 32 32 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 33 33 H 1.08993 * 109.46955 * 60.00011 * 4 2 1 34 34 H 1.09000 * 109.47050 * 179.97438 * 4 2 1 35 35 H 1.09001 * 109.47002 * 299.99574 * 4 2 1 36 36 H 1.08008 * 122.44899 * 0.02562 * 6 5 2 37 37 H 1.08007 * 123.34988 * 180.02562 * 7 6 5 38 38 H 0.96996 * 119.99803 * 0.02562 * 11 9 8 39 39 H 1.08996 * 109.47100 * 299.99851 * 12 11 9 40 40 H 1.08993 * 109.47150 * 60.00232 * 12 11 9 41 41 H 1.09000 * 113.74346 * 252.25284 * 15 13 12 42 42 H 1.09002 * 113.74132 * 23.45962 * 15 13 12 43 43 H 1.08997 * 113.76454 * 90.69778 * 16 15 13 44 44 H 1.09002 * 113.76837 * 221.97753 * 16 15 13 45 45 H 0.96990 * 119.99934 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 2.0323 -0.7105 -1.2305 6 6 1.7654 -0.3329 -2.4862 7 6 2.3231 -1.1226 -3.4636 8 6 3.0577 -2.1614 -2.9653 9 6 3.7663 -3.1634 -3.7669 10 8 3.7279 -3.1085 -4.9821 11 7 4.4610 -4.1449 -3.1583 12 6 5.1696 -5.1460 -3.9595 13 6 5.8715 -6.1388 -3.0307 14 1 5.1992 -6.5826 -2.2965 15 6 6.7487 -7.1659 -3.7695 16 6 7.7833 -6.9357 -2.6529 17 7 7.1305 -5.6271 -2.4553 18 6 7.5317 -4.4220 -1.9436 19 1 6.8407 -3.5926 -1.9101 20 6 8.8268 -4.2660 -1.4690 21 7 9.6690 -5.2766 -1.5103 22 14 9.3743 -2.6218 -0.7716 23 1 8.5211 -2.2686 0.3913 24 1 10.7906 -2.7162 -0.3353 25 1 9.2463 -1.5739 -1.8160 26 16 3.0233 -2.0992 -1.2084 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.6768 1.9562 0.8900 31 1 3.1300 1.4424 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 -1.7489 1.2492 34 1 3.1300 -0.7217 1.2490 35 1 1.6767 -0.2075 2.1393 36 1 1.1564 0.5292 -2.7151 37 1 2.1941 -0.9395 -4.5202 38 1 4.4918 -4.1885 -2.1898 39 1 4.4565 -5.6791 -4.5884 40 1 5.9093 -4.6508 -4.5884 41 1 6.3312 -8.1726 -3.7802 42 1 7.0805 -6.8329 -4.7529 43 1 7.6740 -7.6135 -1.8063 44 1 8.8100 -6.8667 -3.0126 45 1 10.5740 -5.1676 -1.1790 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039047832.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:40:09 Heat of formation + Delta-G solvation = 14.845082 kcal Electronic energy + Delta-G solvation = -24900.220245 eV Core-core repulsion = 21430.815165 eV Total energy + Delta-G solvation = -3469.405081 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.92355 -39.82398 -39.38829 -36.82875 -35.60410 -34.21597 -30.84687 -29.86248 -28.88448 -28.32867 -28.12403 -25.92919 -25.29638 -23.85642 -22.27055 -21.43102 -21.01609 -20.08348 -18.77939 -18.30012 -17.34286 -17.12334 -16.73024 -16.38954 -16.22198 -15.73970 -15.40243 -15.31641 -14.96338 -14.91130 -14.69830 -14.02081 -13.89440 -13.60565 -13.53521 -13.29495 -12.95630 -12.93148 -12.84284 -12.71692 -12.61610 -12.58745 -12.39908 -12.32228 -11.95942 -11.92163 -11.86464 -11.55975 -11.50640 -11.43031 -11.04668 -10.82754 -10.21293 -9.65831 -9.54514 -8.88806 -7.87181 -5.18721 -0.51030 0.44898 0.92376 1.38302 1.41801 1.44344 1.49744 2.07356 2.19085 2.46717 3.31767 3.37761 3.48591 3.76922 3.88481 3.98543 4.00194 4.10548 4.23378 4.32410 4.39008 4.51569 4.59151 4.69485 4.70137 4.75414 4.85673 4.86391 4.92265 4.99058 5.00301 5.05062 5.05982 5.07770 5.15775 5.30525 5.31877 5.33902 5.34995 5.40811 5.42956 5.60867 5.74081 5.98265 6.39503 6.95593 7.05089 7.64988 8.59670 9.29305 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.012658 B = 0.003940 C = 0.003318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2211.483152 B = 7104.813795 C = 8437.098377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.000 4.000 3 C -0.137 4.137 4 C -0.159 4.159 5 C -0.170 4.170 6 C -0.157 4.157 7 C -0.049 4.049 8 C -0.308 4.308 9 C 0.584 3.416 10 O -0.578 6.578 11 N -0.709 5.709 12 C 0.132 3.868 13 C 0.130 3.870 14 H 0.071 0.929 15 C -0.129 4.129 16 C 0.151 3.849 17 N -0.629 5.629 18 C -0.215 4.215 19 H 0.079 0.921 20 C -0.066 4.066 21 N -0.952 5.952 22 Si 0.960 3.040 23 H -0.272 1.272 24 H -0.294 1.294 25 H -0.286 1.286 26 S 0.215 5.785 27 H 0.065 0.935 28 H 0.079 0.921 29 H 0.053 0.947 30 H 0.080 0.920 31 H 0.046 0.954 32 H 0.066 0.934 33 H 0.060 0.940 34 H 0.051 0.949 35 H 0.087 0.913 36 H 0.168 0.832 37 H 0.150 0.850 38 H 0.403 0.597 39 H 0.085 0.915 40 H 0.045 0.955 41 H 0.096 0.904 42 H 0.078 0.922 43 H 0.024 0.976 44 H 0.039 0.961 45 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.672 8.716 4.178 22.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.003 4.003 3 C -0.195 4.195 4 C -0.217 4.217 5 C -0.290 4.290 6 C -0.187 4.187 7 C -0.083 4.083 8 C -0.427 4.427 9 C 0.372 3.628 10 O -0.461 6.461 11 N -0.358 5.358 12 C 0.007 3.993 13 C 0.024 3.976 14 H 0.089 0.911 15 C -0.167 4.167 16 C 0.026 3.974 17 N -0.356 5.356 18 C -0.344 4.344 19 H 0.097 0.903 20 C -0.258 4.258 21 N -0.601 5.601 22 Si 0.789 3.211 23 H -0.198 1.198 24 H -0.220 1.220 25 H -0.213 1.213 26 S 0.485 5.515 27 H 0.084 0.916 28 H 0.098 0.902 29 H 0.072 0.928 30 H 0.099 0.901 31 H 0.065 0.935 32 H 0.085 0.915 33 H 0.079 0.921 34 H 0.070 0.930 35 H 0.106 0.894 36 H 0.186 0.814 37 H 0.168 0.832 38 H 0.238 0.762 39 H 0.103 0.897 40 H 0.063 0.937 41 H 0.114 0.886 42 H 0.097 0.903 43 H 0.042 0.958 44 H 0.058 0.942 45 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -19.794 8.016 4.614 21.848 hybrid contribution 0.456 1.500 -0.417 1.623 sum -19.338 9.516 4.196 21.957 Atomic orbital electron populations 1.21885 0.91394 1.02456 1.03371 1.19311 0.97013 0.95073 0.88858 1.21914 1.00834 0.93316 1.03423 1.22076 1.01183 1.00853 0.97603 1.24752 1.02959 1.00969 1.00347 1.20011 1.05056 1.03344 0.90251 1.20915 0.93808 0.91728 1.01889 1.24574 1.13555 1.05715 0.98897 1.17344 0.78165 0.80500 0.86801 1.90750 1.64856 1.75863 1.14651 1.45844 1.50620 1.28731 1.10647 1.21642 0.94694 0.89049 0.93879 1.22698 0.89280 0.92280 0.93346 0.91134 1.23564 0.96317 0.98732 0.98128 1.22166 0.96556 0.85054 0.93622 1.46405 1.09333 1.07407 1.72429 1.19190 0.95499 0.88015 1.31646 0.90320 1.25447 0.96855 1.00326 1.03220 1.69978 1.05401 1.31293 1.53434 0.85424 0.77053 0.80057 0.78568 1.19824 1.22045 1.21270 1.83216 1.45045 1.24161 0.99073 0.91569 0.90200 0.92762 0.90106 0.93502 0.91508 0.92091 0.92958 0.89374 0.81439 0.83231 0.76220 0.89718 0.93680 0.88583 0.90304 0.95849 0.94211 0.94509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.49 8.33 71.98 0.60 -0.89 16 2 C 0.00 -0.01 0.90 -52.93 -0.05 -0.06 16 3 C -0.14 -1.78 8.33 71.98 0.60 -1.18 16 4 C -0.16 -2.35 7.52 71.98 0.54 -1.81 16 5 C -0.17 -3.43 4.97 24.68 0.12 -3.31 16 6 C -0.16 -3.19 9.18 21.08 0.19 -2.99 16 7 C -0.05 -1.29 10.01 21.72 0.22 -1.08 16 8 C -0.31 -9.43 6.45 24.08 0.16 -9.27 16 9 C 0.58 21.66 7.78 86.42 0.67 22.33 16 10 O -0.58 -24.84 16.84 -4.36 -0.07 -24.92 16 11 N -0.71 -25.46 5.52 -467.18 -2.58 -28.04 16 12 C 0.13 4.83 5.54 86.38 0.48 5.30 16 13 C 0.13 4.87 4.33 45.10 0.20 5.07 16 14 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 15 C -0.13 -4.48 7.86 31.26 0.25 -4.23 16 16 C 0.15 6.97 7.51 86.48 0.65 7.62 16 17 N -0.63 -30.85 3.57 -694.06 -2.48 -33.33 16 18 C -0.21 -11.72 10.51 84.03 0.88 -10.84 16 19 H 0.08 4.15 7.80 -2.91 -0.02 4.12 16 20 C -0.07 -3.73 5.50 84.86 0.47 -3.27 16 21 N -0.95 -57.34 11.39 21.65 0.25 -57.10 16 22 Si 0.96 46.17 29.55 68.60 2.03 48.20 16 23 H -0.27 -12.39 7.11 99.48 0.71 -11.69 16 24 H -0.29 -14.26 7.11 99.48 0.71 -13.56 16 25 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 26 S 0.21 5.36 20.43 -56.49 -1.15 4.21 16 27 H 0.07 0.68 7.86 -2.39 -0.02 0.66 16 28 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.05 0.67 8.14 -2.38 -0.02 0.66 16 30 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.07 0.79 7.86 -2.39 -0.02 0.77 16 33 H 0.06 0.92 7.91 -2.39 -0.02 0.90 16 34 H 0.05 0.90 7.89 -2.39 -0.02 0.88 16 35 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.17 2.43 7.90 -2.91 -0.02 2.41 16 37 H 0.15 3.83 8.06 -2.91 -0.02 3.80 16 38 H 0.40 13.81 7.59 -92.71 -0.70 13.11 16 39 H 0.08 2.74 8.14 -2.39 -0.02 2.72 16 40 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 41 H 0.10 2.60 8.14 -2.39 -0.02 2.58 16 42 H 0.08 2.74 8.10 -2.39 -0.02 2.72 16 43 H 0.02 1.09 8.14 -2.39 -0.02 1.07 16 44 H 0.04 2.09 7.16 -2.39 -0.02 2.07 16 45 H 0.25 14.56 8.31 -92.72 -0.77 13.79 16 Total: -1.00 -70.40 381.20 2.23 -68.17 By element: Atomic # 1 Polarization: 21.14 SS G_CDS: 0.27 Total: 21.41 kcal Atomic # 6 Polarization: -4.57 SS G_CDS: 5.97 Total: 1.40 kcal Atomic # 7 Polarization: -113.65 SS G_CDS: -4.81 Total: -118.47 kcal Atomic # 8 Polarization: -24.84 SS G_CDS: -0.07 Total: -24.92 kcal Atomic # 14 Polarization: 46.17 SS G_CDS: 2.03 Total: 48.20 kcal Atomic # 16 Polarization: 5.36 SS G_CDS: -1.15 Total: 4.21 kcal Total: -70.40 2.23 -68.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039047832.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.012 kcal (2) G-P(sol) polarization free energy of solvation -70.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.167 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds