Wall clock time and date at job start Tue Mar 31 2020 13:40:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47479 * 2 1 4 4 C 1.53005 * 109.47249 * 239.99678 * 2 1 3 5 5 C 1.50700 * 109.47108 * 119.99925 * 2 1 3 6 6 C 1.33820 * 124.52494 * 59.99748 * 5 2 1 7 7 C 1.37475 * 115.10299 * 180.02562 * 6 5 2 8 8 C 1.36645 * 113.29257 * 359.97438 * 7 6 5 9 9 C 1.46586 * 125.45089 * 179.97438 * 8 7 6 10 10 O 1.21701 * 120.00606 * 359.97438 * 9 8 7 11 11 N 1.34779 * 119.99519 * 179.97438 * 9 8 7 12 12 C 1.46500 * 119.99864 * 180.02562 * 11 9 8 13 13 C 1.53004 * 109.47323 * 180.02562 * 12 11 9 14 14 H 1.08996 * 112.73612 * 303.75503 * 13 12 11 15 15 C 1.53504 * 113.46653 * 172.93921 * 13 12 11 16 16 C 1.53499 * 83.34235 * 219.15142 * 15 13 12 17 17 N 1.47068 * 113.46557 * 74.50602 * 13 12 11 18 18 C 1.36936 * 136.05631 * 321.63479 * 17 13 12 19 19 H 1.08001 * 120.00282 * 356.08522 * 18 17 13 20 20 C 1.38814 * 119.99816 * 176.08367 * 18 17 13 21 21 N 1.31623 * 120.00077 * 6.68272 * 20 18 17 22 22 Si 1.86800 * 119.99859 * 186.68531 * 20 18 17 23 23 H 1.48508 * 109.46943 * 94.98024 * 22 20 18 24 24 H 1.48498 * 109.46995 * 214.98044 * 22 20 18 25 25 H 1.48493 * 109.47191 * 334.98307 * 22 20 18 26 26 S 1.70620 * 124.52295 * 240.27156 * 5 2 1 27 27 H 1.08997 * 109.47317 * 300.00353 * 1 2 3 28 28 H 1.09004 * 109.47038 * 60.00442 * 1 2 3 29 29 H 1.09001 * 109.47252 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47170 * 180.02562 * 3 2 1 31 31 H 1.09004 * 109.46624 * 299.99811 * 3 2 1 32 32 H 1.08997 * 109.47135 * 59.99535 * 3 2 1 33 33 H 1.09003 * 109.46917 * 299.99833 * 4 2 1 34 34 H 1.08998 * 109.47073 * 60.00389 * 4 2 1 35 35 H 1.08998 * 109.46800 * 180.02562 * 4 2 1 36 36 H 1.07997 * 122.44829 * 359.97438 * 6 5 2 37 37 H 1.07998 * 123.35041 * 179.97438 * 7 6 5 38 38 H 0.96998 * 120.00724 * 359.97438 * 11 9 8 39 39 H 1.09007 * 109.47451 * 59.99843 * 12 11 9 40 40 H 1.09005 * 109.47382 * 300.00183 * 12 11 9 41 41 H 1.08998 * 114.20604 * 332.73815 * 15 13 12 42 42 H 1.09003 * 114.20333 * 105.36859 * 15 13 12 43 43 H 1.08999 * 113.46683 * 271.28903 * 16 15 13 44 44 H 1.08997 * 113.46455 * 140.85015 * 16 15 13 45 45 H 0.96991 * 120.00054 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0323 -0.7104 1.2305 6 6 1.7653 -1.9867 1.5315 7 6 2.3230 -2.4383 2.7041 8 6 3.0577 -1.4872 3.3544 9 6 3.7654 -1.6802 4.6235 10 8 3.7255 -2.7594 5.1847 11 7 4.4603 -0.6624 5.1691 12 6 5.1681 -0.8553 6.4372 13 6 5.8705 0.4453 6.8323 14 1 6.5507 0.8077 6.0616 15 6 6.4990 0.3997 8.2320 16 6 5.9862 1.8442 8.3142 17 7 4.9516 1.4776 7.3352 18 6 3.6903 1.9110 7.0246 19 1 3.1658 1.4865 6.1813 20 6 3.0858 2.8959 7.7936 21 7 3.7702 3.5063 8.7378 22 14 1.3011 3.3551 7.4884 23 1 0.4280 2.5921 8.4162 24 1 1.1178 4.8104 7.7204 25 1 0.9386 3.0279 6.0860 26 16 3.0118 0.0071 2.4291 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0277 -0.0005 30 1 3.1300 1.4424 -0.0005 31 1 1.6767 1.9563 -0.8901 32 1 1.6767 1.9563 0.8899 33 1 1.6767 -1.7490 -1.2491 34 1 1.6767 -0.2075 -2.1392 35 1 3.1300 -0.7217 -1.2489 36 1 1.1556 -2.6157 0.8999 37 1 2.1934 -3.4445 3.0743 38 1 4.4925 0.1977 4.7218 39 1 5.9076 -1.6480 6.3236 40 1 4.4545 -1.1327 7.2131 41 1 6.0082 -0.2886 8.9201 42 1 7.5851 0.3071 8.2314 43 1 6.6979 2.5795 7.9388 44 1 5.5843 2.1071 9.2926 45 1 3.3480 4.1947 9.2749 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039047833.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:40:14 Heat of formation + Delta-G solvation = 36.844914 kcal Electronic energy + Delta-G solvation = -24951.984842 eV Core-core repulsion = 21483.533746 eV Total energy + Delta-G solvation = -3468.451096 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.54291 -38.77283 -38.02822 -35.92490 -34.05837 -32.23416 -29.60990 -28.04000 -27.72115 -27.54000 -27.40944 -24.79628 -23.48700 -22.22107 -20.88552 -20.58760 -19.45305 -18.75268 -17.60068 -16.64705 -16.11441 -15.56649 -15.30966 -15.14432 -14.75139 -14.47900 -14.24392 -14.15135 -13.81271 -13.36295 -13.19209 -13.00766 -12.85318 -12.70731 -12.27959 -12.08323 -11.96814 -11.86332 -11.53630 -11.49778 -11.24143 -11.21970 -11.17546 -11.00847 -10.77832 -10.65468 -10.57172 -10.03418 -9.84109 -9.75984 -9.28412 -8.79519 -8.75990 -8.57452 -8.46307 -6.92644 -5.79464 -3.11130 0.57355 1.49280 1.93927 2.44034 3.37094 3.42097 3.44203 3.44819 3.54967 4.26026 4.41827 4.55639 4.65847 4.97525 5.02879 5.21202 5.28497 5.32709 5.33603 5.37720 5.46028 5.47797 5.55220 5.57609 5.60817 5.67474 5.69742 5.82903 5.89664 5.92018 6.01036 6.05614 6.08782 6.19620 6.32385 6.36217 6.39204 6.58482 6.69235 6.84089 7.20464 7.38840 7.55627 7.82937 7.95606 8.47814 9.00840 9.68427 10.61005 11.37939 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.012592 B = 0.004009 C = 0.003374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2223.074627 B = 6983.260013 C = 8296.129710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.001 3.999 3 C -0.156 4.156 4 C -0.135 4.135 5 C -0.189 4.189 6 C -0.153 4.153 7 C -0.059 4.059 8 C -0.266 4.266 9 C 0.585 3.415 10 O -0.542 6.542 11 N -0.708 5.708 12 C 0.122 3.878 13 C 0.126 3.874 14 H 0.048 0.952 15 C -0.160 4.160 16 C 0.151 3.849 17 N -0.601 5.601 18 C -0.215 4.215 19 H 0.079 0.921 20 C -0.004 4.004 21 N -0.916 5.916 22 Si 0.905 3.095 23 H -0.288 1.288 24 H -0.290 1.290 25 H -0.280 1.280 26 S 0.218 5.782 27 H 0.060 0.940 28 H 0.061 0.939 29 H 0.059 0.941 30 H 0.062 0.938 31 H 0.068 0.932 32 H 0.064 0.936 33 H 0.059 0.941 34 H 0.061 0.939 35 H 0.058 0.942 36 H 0.139 0.861 37 H 0.149 0.851 38 H 0.400 0.600 39 H 0.062 0.938 40 H 0.074 0.926 41 H 0.080 0.920 42 H 0.059 0.941 43 H 0.025 0.975 44 H 0.072 0.928 45 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.037 -7.143 -18.032 19.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.001 4.001 3 C -0.214 4.214 4 C -0.193 4.193 5 C -0.309 4.309 6 C -0.184 4.184 7 C -0.092 4.092 8 C -0.386 4.386 9 C 0.371 3.629 10 O -0.422 6.422 11 N -0.358 5.358 12 C -0.002 4.002 13 C 0.018 3.982 14 H 0.066 0.934 15 C -0.199 4.199 16 C 0.025 3.975 17 N -0.327 5.327 18 C -0.342 4.342 19 H 0.097 0.903 20 C -0.201 4.201 21 N -0.563 5.563 22 Si 0.735 3.265 23 H -0.215 1.215 24 H -0.217 1.217 25 H -0.205 1.205 26 S 0.488 5.512 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.081 0.919 31 H 0.087 0.913 32 H 0.083 0.917 33 H 0.078 0.922 34 H 0.080 0.920 35 H 0.077 0.923 36 H 0.157 0.843 37 H 0.167 0.833 38 H 0.235 0.765 39 H 0.080 0.920 40 H 0.092 0.908 41 H 0.098 0.902 42 H 0.077 0.923 43 H 0.042 0.958 44 H 0.090 0.910 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -0.715 -6.218 -17.332 18.427 hybrid contribution -1.652 -0.626 -0.601 1.866 sum -2.368 -6.844 -17.933 19.340 Atomic orbital electron populations 1.21897 0.92979 1.02372 1.02273 1.19139 0.95946 0.94516 0.90482 1.22035 1.01690 0.94712 1.02984 1.21883 1.01428 1.00289 0.95728 1.24306 1.05463 0.99018 1.02077 1.19816 1.04741 0.95295 0.98550 1.20668 0.94870 1.00162 0.93528 1.24773 1.11619 0.99479 1.02755 1.16966 0.78539 0.84416 0.82968 1.90784 1.62998 1.25693 1.62722 1.45861 1.51327 1.13833 1.24764 1.21865 0.95558 0.98401 0.84374 1.22438 0.91683 0.88790 0.95283 0.93449 1.23638 0.98375 1.01073 0.96778 1.22051 0.88586 0.90819 0.96015 1.45736 1.11240 1.37359 1.38357 1.18836 0.87683 1.16967 1.10731 0.90337 1.24753 0.98064 0.98722 0.98538 1.69836 1.35076 1.27417 1.23968 0.86214 0.85020 0.77476 0.77796 1.21521 1.21691 1.20510 1.83255 1.45250 1.11148 1.11549 0.92131 0.91980 0.92198 0.91865 0.91322 0.91682 0.92215 0.91995 0.92289 0.84292 0.83295 0.76549 0.92009 0.90793 0.90155 0.92271 0.95755 0.90960 0.93673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.12 8.33 37.15 0.31 -0.81 16 2 C 0.00 0.01 0.90 -155.66 -0.14 -0.13 16 3 C -0.16 -1.36 7.52 37.16 0.28 -1.08 16 4 C -0.14 -1.01 8.33 37.16 0.31 -0.70 16 5 C -0.19 -2.13 4.97 -35.86 -0.18 -2.31 16 6 C -0.15 -1.75 9.19 -41.41 -0.38 -2.13 16 7 C -0.06 -0.81 10.01 -40.44 -0.40 -1.22 16 8 C -0.27 -4.16 6.45 -36.79 -0.24 -4.40 16 9 C 0.59 10.85 7.78 -12.89 -0.10 10.75 16 10 O -0.54 -11.49 16.84 5.19 0.09 -11.40 16 11 N -0.71 -12.89 5.36 -61.64 -0.33 -13.22 16 12 C 0.12 2.28 5.52 -4.04 -0.02 2.25 16 13 C 0.13 2.44 4.10 -72.39 -0.30 2.14 16 14 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 15 C -0.16 -2.90 8.03 -26.21 -0.21 -3.11 16 16 C 0.15 3.44 7.42 -8.50 -0.06 3.37 16 17 N -0.60 -14.65 3.65 -176.97 -0.65 -15.30 16 18 C -0.21 -5.77 10.54 -15.06 -0.16 -5.93 16 19 H 0.08 2.04 7.49 -52.49 -0.39 1.65 16 20 C 0.00 -0.11 5.50 -17.43 -0.10 -0.20 16 21 N -0.92 -26.80 11.52 55.49 0.64 -26.16 16 22 Si 0.90 22.06 29.56 -169.99 -5.02 17.04 16 23 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 24 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 25 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 26 S 0.22 2.87 20.43 -107.50 -2.20 0.67 16 27 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.46 7.86 -51.93 -0.41 0.06 16 30 H 0.06 0.55 7.91 -51.93 -0.41 0.14 16 31 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.63 7.90 -51.93 -0.41 0.22 16 33 H 0.06 0.42 7.86 -51.93 -0.41 0.02 16 34 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.14 1.27 7.90 -52.49 -0.41 0.86 16 37 H 0.15 1.96 8.06 -52.49 -0.42 1.54 16 38 H 0.40 7.03 7.42 -40.82 -0.30 6.73 16 39 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 40 H 0.07 1.55 8.14 -51.93 -0.42 1.13 16 41 H 0.08 1.46 8.12 -51.93 -0.42 1.03 16 42 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.07 1.84 7.11 -51.93 -0.37 1.47 16 45 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 380.63 15.07 5.74 5.74 Total: -1.00 -31.69 380.63 -10.45 -42.14 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: -7.32 Total: 4.00 kcal Atomic # 6 Polarization: -2.12 SS G_CDS: -1.39 Total: -3.51 kcal Atomic # 7 Polarization: -54.34 SS G_CDS: -0.34 Total: -54.68 kcal Atomic # 8 Polarization: -11.49 SS G_CDS: 0.09 Total: -11.40 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Atomic # 16 Polarization: 2.87 SS G_CDS: -2.20 Total: 0.67 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -31.69 -10.45 -42.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039047833.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.987 kcal (2) G-P(sol) polarization free energy of solvation -31.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.142 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds