Wall clock time and date at job start Tue Mar 31 2020 13:40:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47479 * 2 1 4 4 C 1.53005 * 109.47249 * 239.99678 * 2 1 3 5 5 C 1.50700 * 109.47108 * 119.99925 * 2 1 3 6 6 C 1.33820 * 124.52494 * 59.99748 * 5 2 1 7 7 C 1.37475 * 115.10299 * 180.02562 * 6 5 2 8 8 C 1.36645 * 113.29257 * 359.97438 * 7 6 5 9 9 C 1.46586 * 125.45089 * 179.97438 * 8 7 6 10 10 O 1.21701 * 120.00606 * 359.97438 * 9 8 7 11 11 N 1.34779 * 119.99519 * 179.97438 * 9 8 7 12 12 C 1.46500 * 119.99864 * 180.02562 * 11 9 8 13 13 C 1.53004 * 109.47323 * 180.02562 * 12 11 9 14 14 H 1.08996 * 112.73612 * 303.75503 * 13 12 11 15 15 C 1.53504 * 113.46653 * 172.93921 * 13 12 11 16 16 C 1.53499 * 83.34235 * 219.15142 * 15 13 12 17 17 N 1.47068 * 113.46557 * 74.50602 * 13 12 11 18 18 C 1.36936 * 136.05631 * 321.63479 * 17 13 12 19 19 H 1.08001 * 120.00282 * 356.08522 * 18 17 13 20 20 C 1.38814 * 119.99816 * 176.08367 * 18 17 13 21 21 N 1.31623 * 120.00077 * 6.68272 * 20 18 17 22 22 Si 1.86800 * 119.99859 * 186.68531 * 20 18 17 23 23 H 1.48508 * 109.46943 * 94.98024 * 22 20 18 24 24 H 1.48498 * 109.46995 * 214.98044 * 22 20 18 25 25 H 1.48493 * 109.47191 * 334.98307 * 22 20 18 26 26 S 1.70620 * 124.52295 * 240.27156 * 5 2 1 27 27 H 1.08997 * 109.47317 * 300.00353 * 1 2 3 28 28 H 1.09004 * 109.47038 * 60.00442 * 1 2 3 29 29 H 1.09001 * 109.47252 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47170 * 180.02562 * 3 2 1 31 31 H 1.09004 * 109.46624 * 299.99811 * 3 2 1 32 32 H 1.08997 * 109.47135 * 59.99535 * 3 2 1 33 33 H 1.09003 * 109.46917 * 299.99833 * 4 2 1 34 34 H 1.08998 * 109.47073 * 60.00389 * 4 2 1 35 35 H 1.08998 * 109.46800 * 180.02562 * 4 2 1 36 36 H 1.07997 * 122.44829 * 359.97438 * 6 5 2 37 37 H 1.07998 * 123.35041 * 179.97438 * 7 6 5 38 38 H 0.96998 * 120.00724 * 359.97438 * 11 9 8 39 39 H 1.09007 * 109.47451 * 59.99843 * 12 11 9 40 40 H 1.09005 * 109.47382 * 300.00183 * 12 11 9 41 41 H 1.08998 * 114.20604 * 332.73815 * 15 13 12 42 42 H 1.09003 * 114.20333 * 105.36859 * 15 13 12 43 43 H 1.08999 * 113.46683 * 271.28903 * 16 15 13 44 44 H 1.08997 * 113.46455 * 140.85015 * 16 15 13 45 45 H 0.96991 * 120.00054 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0323 -0.7104 1.2305 6 6 1.7653 -1.9867 1.5315 7 6 2.3230 -2.4383 2.7041 8 6 3.0577 -1.4872 3.3544 9 6 3.7654 -1.6802 4.6235 10 8 3.7255 -2.7594 5.1847 11 7 4.4603 -0.6624 5.1691 12 6 5.1681 -0.8553 6.4372 13 6 5.8705 0.4453 6.8323 14 1 6.5507 0.8077 6.0616 15 6 6.4990 0.3997 8.2320 16 6 5.9862 1.8442 8.3142 17 7 4.9516 1.4776 7.3352 18 6 3.6903 1.9110 7.0246 19 1 3.1658 1.4865 6.1813 20 6 3.0858 2.8959 7.7936 21 7 3.7702 3.5063 8.7378 22 14 1.3011 3.3551 7.4884 23 1 0.4280 2.5921 8.4162 24 1 1.1178 4.8104 7.7204 25 1 0.9386 3.0279 6.0860 26 16 3.0118 0.0071 2.4291 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0277 -0.0005 30 1 3.1300 1.4424 -0.0005 31 1 1.6767 1.9563 -0.8901 32 1 1.6767 1.9563 0.8899 33 1 1.6767 -1.7490 -1.2491 34 1 1.6767 -0.2075 -2.1392 35 1 3.1300 -0.7217 -1.2489 36 1 1.1556 -2.6157 0.8999 37 1 2.1934 -3.4445 3.0743 38 1 4.4925 0.1977 4.7218 39 1 5.9076 -1.6480 6.3236 40 1 4.4545 -1.1327 7.2131 41 1 6.0082 -0.2886 8.9201 42 1 7.5851 0.3071 8.2314 43 1 6.6979 2.5795 7.9388 44 1 5.5843 2.1071 9.2926 45 1 3.3480 4.1947 9.2749 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039047833.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:40:13 Heat of formation + Delta-G solvation = 18.334039 kcal Electronic energy + Delta-G solvation = -24952.787534 eV Core-core repulsion = 21483.533746 eV Total energy + Delta-G solvation = -3469.253788 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.95423 -39.92929 -39.45020 -36.82874 -35.58921 -34.26073 -30.83806 -29.93327 -28.84737 -28.32807 -28.12455 -25.90538 -25.40617 -23.73065 -22.25645 -21.43182 -21.10548 -20.10098 -18.78625 -18.32678 -17.33338 -17.12457 -16.73305 -16.37948 -16.21122 -15.75272 -15.38512 -15.31655 -14.96373 -14.89225 -14.68695 -14.02197 -13.89557 -13.62245 -13.54103 -13.33497 -13.04343 -12.95268 -12.84185 -12.72782 -12.61826 -12.58857 -12.39803 -12.31330 -11.95960 -11.92287 -11.86382 -11.63737 -11.50732 -11.36121 -10.99251 -10.78349 -10.19717 -9.65716 -9.54579 -8.90942 -7.89578 -5.20020 -0.50890 0.44965 0.92609 1.38411 1.41026 1.43944 1.50754 2.08246 2.19479 2.45447 3.33487 3.41136 3.48679 3.76608 3.88236 3.93519 4.00087 4.11892 4.23351 4.31603 4.39073 4.51560 4.60036 4.68007 4.69779 4.75316 4.85396 4.86286 4.92221 4.98952 5.00193 5.04491 5.05848 5.07592 5.15653 5.30345 5.30770 5.33898 5.35260 5.40754 5.42968 5.57933 5.73539 5.96170 6.39933 6.92833 7.05378 7.62765 8.62644 9.28228 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.012592 B = 0.004009 C = 0.003374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2223.074627 B = 6983.260013 C = 8296.129710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.001 4.001 3 C -0.159 4.159 4 C -0.133 4.133 5 C -0.170 4.170 6 C -0.157 4.157 7 C -0.049 4.049 8 C -0.308 4.308 9 C 0.584 3.416 10 O -0.578 6.578 11 N -0.709 5.709 12 C 0.130 3.870 13 C 0.131 3.869 14 H 0.069 0.931 15 C -0.132 4.132 16 C 0.143 3.857 17 N -0.629 5.629 18 C -0.208 4.208 19 H 0.082 0.918 20 C -0.064 4.064 21 N -0.950 5.950 22 Si 0.959 3.041 23 H -0.295 1.295 24 H -0.293 1.293 25 H -0.265 1.265 26 S 0.213 5.787 27 H 0.045 0.955 28 H 0.080 0.920 29 H 0.066 0.934 30 H 0.060 0.940 31 H 0.088 0.912 32 H 0.051 0.949 33 H 0.065 0.935 34 H 0.079 0.921 35 H 0.053 0.947 36 H 0.169 0.831 37 H 0.151 0.849 38 H 0.402 0.598 39 H 0.084 0.916 40 H 0.045 0.955 41 H 0.079 0.921 42 H 0.102 0.898 43 H 0.024 0.976 44 H 0.037 0.963 45 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.355 -7.936 -20.915 22.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.003 4.003 3 C -0.217 4.217 4 C -0.191 4.191 5 C -0.290 4.290 6 C -0.187 4.187 7 C -0.083 4.083 8 C -0.427 4.427 9 C 0.372 3.628 10 O -0.461 6.461 11 N -0.358 5.358 12 C 0.005 3.995 13 C 0.025 3.975 14 H 0.086 0.914 15 C -0.171 4.171 16 C 0.017 3.983 17 N -0.355 5.355 18 C -0.336 4.336 19 H 0.100 0.900 20 C -0.257 4.257 21 N -0.599 5.599 22 Si 0.789 3.211 23 H -0.222 1.222 24 H -0.220 1.220 25 H -0.190 1.190 26 S 0.483 5.517 27 H 0.065 0.935 28 H 0.099 0.901 29 H 0.085 0.915 30 H 0.079 0.921 31 H 0.106 0.894 32 H 0.070 0.930 33 H 0.085 0.915 34 H 0.098 0.902 35 H 0.072 0.928 36 H 0.186 0.814 37 H 0.168 0.832 38 H 0.237 0.763 39 H 0.102 0.898 40 H 0.064 0.936 41 H 0.098 0.902 42 H 0.120 0.880 43 H 0.042 0.958 44 H 0.055 0.945 45 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -1.010 -7.023 -20.245 21.452 hybrid contribution -1.539 -0.408 0.184 1.603 sum -2.549 -7.431 -20.061 21.544 Atomic orbital electron populations 1.21914 0.92051 1.02963 1.02548 1.19312 0.96572 0.94487 0.89890 1.22075 1.01595 0.94715 1.03328 1.21884 1.01151 1.00693 0.95361 1.24754 1.03464 0.98918 1.01887 1.20015 1.04922 0.95665 0.98057 1.20916 0.93663 0.99915 0.93832 1.24580 1.13890 1.01474 1.02799 1.17341 0.78083 0.83756 0.83648 1.90746 1.64406 1.26887 1.64077 1.45854 1.51423 1.14010 1.24525 1.21703 0.95293 0.98504 0.83966 1.22595 0.90799 0.87632 0.96507 0.91365 1.23460 1.00848 0.97252 0.95504 1.22069 0.88429 0.93759 0.94011 1.46056 1.11405 1.38631 1.39427 1.19140 0.88937 1.15663 1.09904 0.90048 1.25461 1.01430 0.99685 0.99163 1.70001 1.36254 1.28326 1.25342 0.85330 0.81004 0.76703 0.78100 1.22240 1.21971 1.18973 1.83248 1.46070 1.10319 1.12038 0.93543 0.90088 0.91482 0.92106 0.89355 0.93003 0.91546 0.90186 0.92774 0.81406 0.83186 0.76261 0.89834 0.93628 0.90205 0.87987 0.95833 0.94477 0.94489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.81 8.33 71.98 0.60 -1.21 16 2 C 0.00 -0.01 0.90 -52.93 -0.05 -0.06 16 3 C -0.16 -2.41 7.52 71.98 0.54 -1.87 16 4 C -0.13 -1.52 8.33 71.98 0.60 -0.92 16 5 C -0.17 -3.49 4.97 24.68 0.12 -3.37 16 6 C -0.16 -3.22 9.19 21.08 0.19 -3.03 16 7 C -0.05 -1.30 10.01 21.72 0.22 -1.08 16 8 C -0.31 -9.53 6.45 24.08 0.16 -9.38 16 9 C 0.58 21.80 7.78 86.42 0.67 22.47 16 10 O -0.58 -24.88 16.84 -4.35 -0.07 -24.96 16 11 N -0.71 -25.71 5.36 -467.14 -2.51 -28.21 16 12 C 0.13 4.75 5.52 86.38 0.48 5.23 16 13 C 0.13 4.91 4.10 41.80 0.17 5.08 16 14 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 15 C -0.13 -4.56 8.03 30.93 0.25 -4.31 16 16 C 0.14 6.54 7.42 83.18 0.62 7.16 16 17 N -0.63 -30.76 3.65 -713.82 -2.61 -33.36 16 18 C -0.21 -11.29 10.54 84.03 0.89 -10.41 16 19 H 0.08 4.26 7.49 -2.91 -0.02 4.24 16 20 C -0.06 -3.65 5.50 84.86 0.47 -3.18 16 21 N -0.95 -57.21 11.52 21.65 0.25 -56.96 16 22 Si 0.96 46.10 29.56 68.60 2.03 48.12 16 23 H -0.29 -14.35 7.11 99.48 0.71 -13.64 16 24 H -0.29 -14.07 7.11 99.48 0.71 -13.36 16 25 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 26 S 0.21 5.43 20.43 -56.49 -1.15 4.28 16 27 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.08 0.79 8.14 -2.38 -0.02 0.77 16 29 H 0.07 0.80 7.86 -2.39 -0.02 0.78 16 30 H 0.06 0.94 7.91 -2.39 -0.02 0.92 16 31 H 0.09 0.99 8.14 -2.38 -0.02 0.97 16 32 H 0.05 0.92 7.90 -2.39 -0.02 0.90 16 33 H 0.07 0.69 7.86 -2.39 -0.02 0.67 16 34 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 35 H 0.05 0.68 8.14 -2.39 -0.02 0.67 16 36 H 0.17 2.46 7.90 -2.91 -0.02 2.44 16 37 H 0.15 3.85 8.06 -2.91 -0.02 3.83 16 38 H 0.40 14.08 7.42 -92.71 -0.69 13.39 16 39 H 0.08 2.71 8.14 -2.38 -0.02 2.69 16 40 H 0.05 1.93 8.14 -2.38 -0.02 1.91 16 41 H 0.08 2.79 8.12 -2.39 -0.02 2.77 16 42 H 0.10 2.71 8.14 -2.39 -0.02 2.69 16 43 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 44 H 0.04 1.95 7.11 -2.39 -0.02 1.93 16 45 H 0.25 14.52 8.31 -92.71 -0.77 13.75 16 Total: -1.00 -70.24 380.63 2.15 -68.09 By element: Atomic # 1 Polarization: 21.58 SS G_CDS: 0.29 Total: 21.86 kcal Atomic # 6 Polarization: -4.79 SS G_CDS: 5.92 Total: 1.13 kcal Atomic # 7 Polarization: -113.67 SS G_CDS: -4.86 Total: -118.53 kcal Atomic # 8 Polarization: -24.88 SS G_CDS: -0.07 Total: -24.96 kcal Atomic # 14 Polarization: 46.10 SS G_CDS: 2.03 Total: 48.12 kcal Atomic # 16 Polarization: 5.43 SS G_CDS: -1.15 Total: 4.28 kcal Total: -70.24 2.15 -68.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039047833.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.427 kcal (2) G-P(sol) polarization free energy of solvation -70.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.093 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds