Wall clock time and date at job start Tue Mar 31 2020 13:32:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52999 * 109.47610 * 2 1 4 4 C 1.50697 * 109.47572 * 179.97438 * 3 2 1 5 5 C 1.37469 * 122.45165 * 264.97216 * 4 3 2 6 6 C 1.36649 * 113.29956 * 180.02562 * 5 4 3 7 7 C 1.46575 * 125.45859 * 179.97438 * 6 5 4 8 8 O 1.21701 * 120.00091 * 7.30367 * 7 6 5 9 9 N 1.34780 * 120.00044 * 187.30155 * 7 6 5 10 10 C 1.46497 * 119.99743 * 6.32413 * 9 7 6 11 11 C 1.46505 * 119.99814 * 186.32959 * 9 7 6 12 12 C 1.53499 * 114.20078 * 239.99622 * 11 9 7 13 13 N 1.47062 * 87.98587 * 220.15056 * 12 11 9 14 14 C 1.36939 * 136.06030 * 207.09468 * 13 12 11 15 15 H 1.08002 * 119.99371 * 354.76349 * 14 13 12 16 16 C 1.38810 * 120.00338 * 174.77489 * 14 13 12 17 17 N 1.31612 * 119.99957 * 184.08588 * 16 14 13 18 18 Si 1.86807 * 119.99821 * 4.08616 * 16 14 13 19 19 H 1.48497 * 109.46947 * 174.60325 * 18 16 14 20 20 H 1.48504 * 109.46618 * 294.59895 * 18 16 14 21 21 H 1.48496 * 109.47179 * 54.59765 * 18 16 14 22 22 C 1.47065 * 87.88653 * 27.34407 * 13 12 11 23 23 S 1.75833 * 109.08013 * 0.22958 * 6 5 4 24 24 C 1.33825 * 122.44830 * 84.99572 * 4 3 2 25 25 C 1.50699 * 124.51840 * 359.97438 * 24 4 3 26 26 H 1.08996 * 109.47560 * 180.02562 * 1 2 3 27 27 H 1.09010 * 109.47106 * 300.00342 * 1 2 3 28 28 H 1.09004 * 109.47521 * 60.00095 * 1 2 3 29 29 H 1.09003 * 109.47121 * 240.00072 * 2 1 3 30 30 H 1.09004 * 109.47521 * 119.99905 * 2 1 3 31 31 H 1.08996 * 109.47184 * 59.99849 * 3 2 1 32 32 H 1.09010 * 109.46716 * 300.00049 * 3 2 1 33 33 H 1.08006 * 123.34655 * 0.02562 * 5 4 3 34 34 H 1.08995 * 109.47524 * 275.86092 * 10 9 7 35 35 H 1.08998 * 109.47253 * 35.87247 * 10 9 7 36 36 H 1.09001 * 109.46911 * 155.86280 * 10 9 7 37 37 H 1.08990 * 113.28525 * 13.06211 * 11 9 7 38 38 H 1.08999 * 113.46574 * 105.37130 * 12 11 9 39 39 H 1.08998 * 113.47071 * 334.93074 * 12 11 9 40 40 H 0.96998 * 120.00784 * 5.00621 * 17 16 14 41 41 H 1.09002 * 113.46991 * 87.43703 * 22 13 12 42 42 H 1.09000 * 113.47408 * 217.88215 * 22 13 12 43 43 H 1.09004 * 109.47027 * 90.00615 * 25 24 4 44 44 H 1.09005 * 109.46537 * 209.99867 * 25 24 4 45 45 H 1.08996 * 109.47314 * 329.99463 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5470 1.4424 0.0006 5 6 4.2842 1.5443 1.1565 6 6 5.6333 1.5257 0.9405 7 6 6.6623 1.6180 1.9803 8 8 6.3450 1.5871 3.1548 9 7 7.9598 1.7370 1.6357 10 6 8.3310 1.9135 0.2296 11 6 8.9990 1.6898 2.6674 12 6 9.8614 2.9569 2.7503 13 7 11.0280 2.0865 2.9604 14 6 12.2445 2.2002 3.5788 15 1 12.5523 3.1483 3.9946 16 6 13.0821 1.0971 3.6710 17 7 14.2151 1.1849 4.3349 18 14 12.6011 -0.5119 2.8528 19 1 13.7136 -1.4865 2.9852 20 1 11.3852 -1.0565 3.5087 21 1 12.3220 -0.2716 1.4142 22 6 10.3159 1.0422 2.2085 23 16 5.9372 1.3808 -0.7853 24 6 4.2655 1.3438 -1.1241 25 6 3.6764 1.2220 -2.5058 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.8932 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6767 1.9563 0.8899 32 1 1.6767 1.9563 -0.8901 33 1 3.8410 1.6303 2.1377 34 1 8.3855 0.9396 -0.2569 35 1 7.5817 2.5277 -0.2697 36 1 9.3022 2.4046 0.1691 37 1 8.6339 1.3338 3.6306 38 1 9.6282 3.5851 3.6100 39 1 9.9005 3.5173 1.8163 40 1 14.4313 1.9963 4.8204 41 1 10.4748 1.0979 1.1316 42 1 10.4698 0.0392 2.6065 43 1 3.5342 2.2164 -2.9290 44 1 4.3539 0.6506 -3.1404 45 1 2.7155 0.7110 -2.4474 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044271306.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:07 Heat of formation + Delta-G solvation = 55.501004 kcal Electronic energy + Delta-G solvation = -24753.879599 eV Core-core repulsion = 21286.237491 eV Total energy + Delta-G solvation = -3467.642107 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.19175 -39.08415 -37.93098 -34.82705 -34.47894 -32.44156 -32.03875 -28.97130 -28.18067 -27.04171 -26.05468 -25.43498 -23.97184 -22.59171 -21.74527 -20.15340 -19.17927 -18.45823 -18.16665 -17.48644 -16.46267 -16.25892 -15.61391 -15.37220 -15.09297 -14.86288 -14.47053 -13.93677 -13.77988 -13.76986 -13.34117 -13.21495 -13.10514 -13.03311 -12.72912 -12.28605 -12.24588 -12.19984 -12.03268 -11.98056 -11.65620 -11.55527 -11.47032 -11.30257 -10.98511 -10.61209 -10.55447 -10.42477 -9.92636 -9.40520 -9.19275 -8.97406 -8.82129 -8.52240 -8.31017 -7.21760 -6.35058 -3.29033 0.39678 1.34409 1.78459 2.19784 2.97416 3.19881 3.37224 3.40705 3.62263 4.42219 4.50298 4.55400 4.65420 4.70414 4.78174 4.82476 4.88324 4.94729 5.02062 5.14914 5.18279 5.27386 5.33660 5.35319 5.36066 5.47912 5.50367 5.53970 5.57646 5.66751 5.72222 5.73797 5.77245 5.89194 5.99009 6.08720 6.16750 6.18855 6.29684 6.33529 6.38588 6.88217 7.02062 7.43282 8.17686 8.19232 8.92689 9.44108 10.27727 11.16366 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.027215 B = 0.002754 C = 0.002698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.583750 B =10166.339086 C =10373.932626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.120 4.120 3 C -0.059 4.059 4 C -0.122 4.122 5 C -0.047 4.047 6 C -0.264 4.264 7 C 0.587 3.413 8 O -0.530 6.530 9 N -0.596 5.596 10 C 0.058 3.942 11 C 0.105 3.895 12 C 0.112 3.888 13 N -0.620 5.620 14 C -0.303 4.303 15 H 0.085 0.915 16 C -0.023 4.023 17 N -0.931 5.931 18 Si 1.072 2.928 19 H -0.294 1.294 20 H -0.290 1.290 21 H -0.289 1.289 22 C 0.082 3.918 23 S 0.222 5.778 24 C -0.224 4.224 25 C -0.084 4.084 26 H 0.054 0.946 27 H 0.055 0.945 28 H 0.053 0.947 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.149 0.851 34 H 0.066 0.934 35 H 0.075 0.925 36 H 0.098 0.902 37 H 0.127 0.873 38 H 0.052 0.948 39 H 0.040 0.960 40 H 0.262 0.738 41 H 0.048 0.952 42 H 0.061 0.939 43 H 0.074 0.926 44 H 0.068 0.932 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.080 -0.330 -16.404 30.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.158 4.158 3 C -0.098 4.098 4 C -0.134 4.134 5 C -0.081 4.081 6 C -0.384 4.384 7 C 0.375 3.625 8 O -0.409 6.409 9 N -0.328 5.328 10 C -0.087 4.087 11 C 0.001 3.999 12 C -0.016 4.016 13 N -0.348 5.348 14 C -0.429 4.429 15 H 0.103 0.897 16 C -0.222 4.222 17 N -0.573 5.573 18 Si 0.905 3.095 19 H -0.221 1.221 20 H -0.219 1.219 21 H -0.216 1.216 22 C -0.044 4.044 23 S 0.492 5.508 24 C -0.342 4.342 25 C -0.143 4.143 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.072 0.928 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.090 0.910 32 H 0.089 0.911 33 H 0.167 0.833 34 H 0.085 0.915 35 H 0.093 0.907 36 H 0.116 0.884 37 H 0.145 0.855 38 H 0.070 0.930 39 H 0.058 0.942 40 H 0.072 0.928 41 H 0.065 0.935 42 H 0.079 0.921 43 H 0.093 0.907 44 H 0.087 0.913 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -24.114 -1.924 -16.876 29.496 hybrid contribution -1.769 1.762 0.981 2.682 sum -25.883 -0.163 -15.895 30.375 Atomic orbital electron populations 1.21787 0.95709 1.01696 1.01807 1.21514 0.95521 0.96264 1.02472 1.20323 0.89483 0.97294 1.02750 1.18584 0.97186 1.06201 0.91393 1.20564 0.91002 0.96841 0.99669 1.24538 0.97972 1.18902 0.97009 1.17033 0.81417 0.76665 0.87366 1.90821 1.81104 1.50830 1.18098 1.47734 1.05652 1.71446 1.08005 1.22020 1.02880 1.02310 0.81462 1.23623 0.84845 0.99587 0.91865 1.22759 0.86144 0.93748 0.98940 1.45782 1.15986 1.11769 1.61259 1.20142 0.91583 0.98476 1.32681 0.89737 1.25724 0.94488 1.01381 1.00589 1.70910 1.22778 1.30392 1.33240 0.83694 0.74015 0.76074 0.75708 1.22109 1.21865 1.21644 1.23294 0.89093 0.95634 0.96369 1.83572 1.00808 1.67564 0.98838 1.24583 1.01444 1.08152 1.00062 1.20369 1.01046 1.02605 0.90234 0.92703 0.92630 0.92799 0.91961 0.91712 0.90978 0.91110 0.83290 0.91533 0.90702 0.88380 0.85515 0.92964 0.94238 0.92818 0.93498 0.92126 0.90699 0.91293 0.90523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 9.91 37.15 0.37 -0.50 16 2 C -0.12 -0.83 5.85 -26.74 -0.16 -0.99 16 3 C -0.06 -0.44 4.82 -27.88 -0.13 -0.57 16 4 C -0.12 -1.18 5.04 -106.45 -0.54 -1.72 16 5 C -0.05 -0.57 9.79 -40.44 -0.40 -0.96 16 6 C -0.26 -3.46 6.20 -36.80 -0.23 -3.68 16 7 C 0.59 9.61 7.62 -12.90 -0.10 9.51 16 8 O -0.53 -10.44 16.40 5.19 0.09 -10.35 16 9 N -0.60 -9.38 3.12 -175.14 -0.55 -9.93 16 10 C 0.06 0.70 7.63 59.85 0.46 1.15 16 11 C 0.10 1.98 4.55 -67.67 -0.31 1.67 16 12 C 0.11 2.26 8.23 -8.51 -0.07 2.19 16 13 N -0.62 -15.34 3.69 -184.63 -0.68 -16.02 16 14 C -0.30 -8.76 11.09 -15.06 -0.17 -8.92 16 15 H 0.08 2.57 8.05 -52.49 -0.42 2.14 16 16 C -0.02 -0.68 5.50 -17.43 -0.10 -0.78 16 17 N -0.93 -29.40 13.70 55.49 0.76 -28.64 16 18 Si 1.07 26.82 25.11 -169.99 -4.27 22.55 16 19 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 20 H -0.29 -6.92 6.31 56.52 0.36 -6.56 16 21 H -0.29 -6.67 6.71 56.52 0.38 -6.29 16 22 C 0.08 1.74 5.34 -8.37 -0.04 1.69 16 23 S 0.22 2.14 17.85 -107.50 -1.92 0.23 16 24 C -0.22 -2.00 6.28 -35.86 -0.23 -2.23 16 25 C -0.08 -0.52 9.71 36.01 0.35 -0.17 16 26 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 27 H 0.05 0.31 8.14 -51.92 -0.42 -0.11 16 28 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.06 0.43 7.24 -51.93 -0.38 0.05 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.07 0.52 8.10 -51.93 -0.42 0.10 16 32 H 0.07 0.46 7.46 -51.92 -0.39 0.07 16 33 H 0.15 1.77 8.06 -52.48 -0.42 1.35 16 34 H 0.07 0.70 7.48 -51.93 -0.39 0.31 16 35 H 0.08 0.76 5.16 -27.92 -0.14 0.61 16 36 H 0.10 1.19 5.95 -51.93 -0.31 0.88 16 37 H 0.13 2.60 7.34 -51.93 -0.38 2.22 16 38 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 39 H 0.04 0.73 7.05 -51.93 -0.37 0.37 16 40 H 0.26 8.16 8.73 -40.82 -0.36 7.80 16 41 H 0.05 0.91 6.37 -51.93 -0.33 0.58 16 42 H 0.06 1.35 4.00 -51.93 -0.21 1.15 16 43 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 44 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 45 H 0.08 0.42 6.39 -51.93 -0.33 0.08 16 LS Contribution 361.91 15.07 5.45 5.45 Total: -1.00 -33.89 361.91 -9.07 -42.96 By element: Atomic # 1 Polarization: 4.74 SS G_CDS: -6.67 Total: -1.93 kcal Atomic # 6 Polarization: -3.03 SS G_CDS: -1.28 Total: -4.32 kcal Atomic # 7 Polarization: -54.12 SS G_CDS: -0.47 Total: -54.59 kcal Atomic # 8 Polarization: -10.44 SS G_CDS: 0.09 Total: -10.35 kcal Atomic # 14 Polarization: 26.82 SS G_CDS: -4.27 Total: 22.55 kcal Atomic # 16 Polarization: 2.14 SS G_CDS: -1.92 Total: 0.23 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -33.89 -9.07 -42.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044271306.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.458 kcal (2) G-P(sol) polarization free energy of solvation -33.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.957 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds