Wall clock time and date at job start Tue Mar 31 2020 13:32:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52999 * 109.47610 * 2 1 4 4 C 1.50697 * 109.47572 * 179.97438 * 3 2 1 5 5 C 1.37469 * 122.45165 * 264.97216 * 4 3 2 6 6 C 1.36649 * 113.29956 * 180.02562 * 5 4 3 7 7 C 1.46575 * 125.45859 * 179.97438 * 6 5 4 8 8 O 1.21701 * 120.00091 * 7.30367 * 7 6 5 9 9 N 1.34780 * 120.00044 * 187.30155 * 7 6 5 10 10 C 1.46497 * 119.99743 * 6.32413 * 9 7 6 11 11 C 1.46505 * 119.99814 * 186.32959 * 9 7 6 12 12 C 1.53499 * 114.20078 * 239.99622 * 11 9 7 13 13 N 1.47062 * 87.98587 * 220.15056 * 12 11 9 14 14 C 1.36939 * 136.06030 * 207.09468 * 13 12 11 15 15 H 1.08002 * 119.99371 * 354.76349 * 14 13 12 16 16 C 1.38810 * 120.00338 * 174.77489 * 14 13 12 17 17 N 1.31612 * 119.99957 * 184.08588 * 16 14 13 18 18 Si 1.86807 * 119.99821 * 4.08616 * 16 14 13 19 19 H 1.48497 * 109.46947 * 174.60325 * 18 16 14 20 20 H 1.48504 * 109.46618 * 294.59895 * 18 16 14 21 21 H 1.48496 * 109.47179 * 54.59765 * 18 16 14 22 22 C 1.47065 * 87.88653 * 27.34407 * 13 12 11 23 23 S 1.75833 * 109.08013 * 0.22958 * 6 5 4 24 24 C 1.33825 * 122.44830 * 84.99572 * 4 3 2 25 25 C 1.50699 * 124.51840 * 359.97438 * 24 4 3 26 26 H 1.08996 * 109.47560 * 180.02562 * 1 2 3 27 27 H 1.09010 * 109.47106 * 300.00342 * 1 2 3 28 28 H 1.09004 * 109.47521 * 60.00095 * 1 2 3 29 29 H 1.09003 * 109.47121 * 240.00072 * 2 1 3 30 30 H 1.09004 * 109.47521 * 119.99905 * 2 1 3 31 31 H 1.08996 * 109.47184 * 59.99849 * 3 2 1 32 32 H 1.09010 * 109.46716 * 300.00049 * 3 2 1 33 33 H 1.08006 * 123.34655 * 0.02562 * 5 4 3 34 34 H 1.08995 * 109.47524 * 275.86092 * 10 9 7 35 35 H 1.08998 * 109.47253 * 35.87247 * 10 9 7 36 36 H 1.09001 * 109.46911 * 155.86280 * 10 9 7 37 37 H 1.08990 * 113.28525 * 13.06211 * 11 9 7 38 38 H 1.08999 * 113.46574 * 105.37130 * 12 11 9 39 39 H 1.08998 * 113.47071 * 334.93074 * 12 11 9 40 40 H 0.96998 * 120.00784 * 5.00621 * 17 16 14 41 41 H 1.09002 * 113.46991 * 87.43703 * 22 13 12 42 42 H 1.09000 * 113.47408 * 217.88215 * 22 13 12 43 43 H 1.09004 * 109.47027 * 90.00615 * 25 24 4 44 44 H 1.09005 * 109.46537 * 209.99867 * 25 24 4 45 45 H 1.08996 * 109.47314 * 329.99463 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5470 1.4424 0.0006 5 6 4.2842 1.5443 1.1565 6 6 5.6333 1.5257 0.9405 7 6 6.6623 1.6180 1.9803 8 8 6.3450 1.5871 3.1548 9 7 7.9598 1.7370 1.6357 10 6 8.3310 1.9135 0.2296 11 6 8.9990 1.6898 2.6674 12 6 9.8614 2.9569 2.7503 13 7 11.0280 2.0865 2.9604 14 6 12.2445 2.2002 3.5788 15 1 12.5523 3.1483 3.9946 16 6 13.0821 1.0971 3.6710 17 7 14.2151 1.1849 4.3349 18 14 12.6011 -0.5119 2.8528 19 1 13.7136 -1.4865 2.9852 20 1 11.3852 -1.0565 3.5087 21 1 12.3220 -0.2716 1.4142 22 6 10.3159 1.0422 2.2085 23 16 5.9372 1.3808 -0.7853 24 6 4.2655 1.3438 -1.1241 25 6 3.6764 1.2220 -2.5058 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.8932 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6767 1.9563 0.8899 32 1 1.6767 1.9563 -0.8901 33 1 3.8410 1.6303 2.1377 34 1 8.3855 0.9396 -0.2569 35 1 7.5817 2.5277 -0.2697 36 1 9.3022 2.4046 0.1691 37 1 8.6339 1.3338 3.6306 38 1 9.6282 3.5851 3.6100 39 1 9.9005 3.5173 1.8163 40 1 14.4313 1.9963 4.8204 41 1 10.4748 1.0979 1.1316 42 1 10.4698 0.0392 2.6065 43 1 3.5342 2.2164 -2.9290 44 1 4.3539 0.6506 -3.1404 45 1 2.7155 0.7110 -2.4474 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044271306.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:06 Heat of formation + Delta-G solvation = 33.872745 kcal Electronic energy + Delta-G solvation = -24754.817470 eV Core-core repulsion = 21286.237491 eV Total energy + Delta-G solvation = -3468.579979 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.55044 -40.09254 -39.24571 -36.22193 -35.10018 -34.46908 -32.85859 -30.24602 -29.31549 -28.21049 -27.15302 -26.92745 -25.06939 -23.79950 -22.65766 -21.47432 -20.53823 -19.69961 -19.31291 -19.10047 -17.74913 -17.42417 -16.95675 -16.77070 -15.97276 -15.81695 -15.66696 -15.15097 -15.05889 -14.89599 -14.45668 -14.25526 -13.89293 -13.82661 -13.74278 -13.56638 -13.50566 -13.33563 -13.27330 -12.87688 -12.79615 -12.68356 -12.39122 -12.30227 -12.25944 -11.96257 -11.52190 -11.41820 -11.28062 -11.22180 -11.13634 -11.05606 -9.91123 -9.44432 -9.27825 -9.23621 -8.68241 -5.54055 -0.48730 0.51370 0.99546 1.31955 1.36461 1.46417 1.66423 1.73156 2.07811 2.51331 2.94319 3.16135 3.42962 3.50519 3.87712 3.96908 4.03905 4.04884 4.13645 4.20119 4.29001 4.33678 4.40792 4.44646 4.50809 4.56758 4.63429 4.67240 4.74967 4.77044 4.78226 4.90023 4.93815 4.99024 5.03809 5.08308 5.13021 5.19904 5.25387 5.44168 5.45395 5.51787 5.59373 5.89200 6.21276 6.63850 6.94225 7.25303 8.16954 8.85521 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.027215 B = 0.002754 C = 0.002698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.583750 B =10166.339086 C =10373.932626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.117 4.117 3 C -0.056 4.056 4 C -0.136 4.136 5 C -0.047 4.047 6 C -0.305 4.305 7 C 0.585 3.415 8 O -0.578 6.578 9 N -0.595 5.595 10 C 0.049 3.951 11 C 0.125 3.875 12 C 0.114 3.886 13 N -0.652 5.652 14 C -0.291 4.291 15 H 0.052 0.948 16 C -0.082 4.082 17 N -0.967 5.967 18 Si 1.109 2.891 19 H -0.302 1.302 20 H -0.276 1.276 21 H -0.252 1.252 22 C 0.083 3.917 23 S 0.270 5.730 24 C -0.210 4.210 25 C -0.088 4.088 26 H 0.056 0.944 27 H 0.053 0.947 28 H 0.064 0.936 29 H 0.066 0.934 30 H 0.048 0.952 31 H 0.069 0.931 32 H 0.087 0.913 33 H 0.137 0.863 34 H 0.088 0.912 35 H 0.096 0.904 36 H 0.101 0.899 37 H 0.105 0.895 38 H 0.042 0.958 39 H 0.069 0.931 40 H 0.247 0.753 41 H 0.080 0.920 42 H 0.053 0.947 43 H 0.090 0.910 44 H 0.082 0.918 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.750 -1.021 -20.590 35.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.155 4.155 3 C -0.095 4.095 4 C -0.147 4.147 5 C -0.082 4.082 6 C -0.425 4.425 7 C 0.375 3.625 8 O -0.460 6.460 9 N -0.326 5.326 10 C -0.094 4.094 11 C 0.019 3.981 12 C -0.013 4.013 13 N -0.381 5.381 14 C -0.418 4.418 15 H 0.070 0.930 16 C -0.274 4.274 17 N -0.611 5.611 18 Si 0.935 3.065 19 H -0.230 1.230 20 H -0.203 1.203 21 H -0.177 1.177 22 C -0.042 4.042 23 S 0.540 5.460 24 C -0.330 4.330 25 C -0.146 4.146 26 H 0.075 0.925 27 H 0.072 0.928 28 H 0.083 0.917 29 H 0.085 0.915 30 H 0.066 0.934 31 H 0.087 0.913 32 H 0.106 0.894 33 H 0.155 0.845 34 H 0.106 0.894 35 H 0.113 0.887 36 H 0.120 0.880 37 H 0.123 0.877 38 H 0.061 0.939 39 H 0.087 0.913 40 H 0.056 0.944 41 H 0.097 0.903 42 H 0.071 0.929 43 H 0.109 0.891 44 H 0.100 0.900 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -26.833 -2.580 -21.123 34.247 hybrid contribution -1.090 2.090 2.220 3.238 sum -27.923 -0.490 -18.903 33.723 Atomic orbital electron populations 1.21771 0.94728 1.02025 1.02278 1.21484 0.96352 0.95802 1.01891 1.20352 0.87999 0.97724 1.03465 1.18708 0.98339 1.06853 0.90768 1.20691 0.91101 0.96165 1.00198 1.24274 0.97318 1.22229 0.98686 1.17474 0.81922 0.75528 0.87529 1.90786 1.81866 1.53027 1.20329 1.47655 1.04808 1.71303 1.08850 1.22327 1.03727 1.04076 0.79281 1.22934 0.85110 0.97994 0.92023 1.22929 0.84490 0.94118 0.99746 1.45754 1.15542 1.14543 1.62258 1.19975 0.93088 0.97052 1.31716 0.92974 1.27096 0.94254 1.04865 1.01189 1.71015 1.24733 1.29980 1.35412 0.83290 0.73948 0.72186 0.77105 1.23026 1.20345 1.17700 1.23469 0.88996 0.94271 0.97459 1.83203 1.01041 1.66507 0.95203 1.25044 1.01199 1.05437 1.01290 1.20547 1.01743 1.03938 0.88379 0.92481 0.92828 0.91673 0.91486 0.93353 0.91266 0.89413 0.84533 0.89414 0.88687 0.88039 0.87713 0.93924 0.91300 0.94389 0.90305 0.92932 0.89121 0.89957 0.89379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 9.91 71.98 0.71 -0.68 16 2 C -0.12 -1.39 5.85 30.59 0.18 -1.21 16 3 C -0.06 -0.70 4.82 29.85 0.14 -0.56 16 4 C -0.14 -2.32 5.04 -21.05 -0.11 -2.42 16 5 C -0.05 -1.08 9.79 21.72 0.21 -0.87 16 6 C -0.31 -7.56 6.20 24.07 0.15 -7.41 16 7 C 0.59 18.85 7.62 86.42 0.66 19.51 16 8 O -0.58 -23.43 16.40 -4.35 -0.07 -23.50 16 9 N -0.60 -17.68 3.12 -826.23 -2.57 -20.25 16 10 C 0.05 1.00 7.63 127.77 0.98 1.97 16 11 C 0.12 4.60 4.55 45.55 0.21 4.80 16 12 C 0.11 4.50 8.23 83.18 0.68 5.18 16 13 N -0.65 -31.95 3.69 -738.04 -2.72 -34.68 16 14 C -0.29 -17.19 11.09 84.03 0.93 -16.26 16 15 H 0.05 3.33 8.05 -2.91 -0.02 3.30 16 16 C -0.08 -4.96 5.50 84.86 0.47 -4.50 16 17 N -0.97 -63.03 13.70 21.65 0.30 -62.74 16 18 Si 1.11 53.45 25.11 68.60 1.72 55.18 16 19 H -0.30 -14.90 7.11 99.48 0.71 -14.19 16 20 H -0.28 -12.55 6.31 99.48 0.63 -11.92 16 21 H -0.25 -10.54 6.71 99.48 0.67 -9.87 16 22 C 0.08 3.32 5.34 83.27 0.44 3.77 16 23 S 0.27 4.24 17.85 -56.49 -1.01 3.24 16 24 C -0.21 -3.00 6.28 24.68 0.15 -2.84 16 25 C -0.09 -0.67 9.71 71.24 0.69 0.02 16 26 H 0.06 0.50 8.14 -2.39 -0.02 0.49 16 27 H 0.05 0.51 8.14 -2.38 -0.02 0.50 16 28 H 0.06 0.46 8.14 -2.38 -0.02 0.44 16 29 H 0.07 0.72 7.24 -2.39 -0.02 0.71 16 30 H 0.05 0.72 8.14 -2.38 -0.02 0.70 16 31 H 0.07 0.91 8.10 -2.39 -0.02 0.89 16 32 H 0.09 0.81 7.46 -2.38 -0.02 0.80 16 33 H 0.14 3.36 8.06 -2.91 -0.02 3.34 16 34 H 0.09 1.45 7.48 -2.39 -0.02 1.43 16 35 H 0.10 1.55 5.16 -17.66 -0.09 1.46 16 36 H 0.10 2.03 5.95 -2.39 -0.01 2.02 16 37 H 0.10 4.37 7.34 -2.39 -0.02 4.35 16 38 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 39 H 0.07 2.37 7.05 -2.39 -0.02 2.35 16 40 H 0.25 16.19 8.73 -92.71 -0.81 15.38 16 41 H 0.08 2.71 6.37 -2.39 -0.02 2.69 16 42 H 0.05 2.22 4.00 -2.39 -0.01 2.21 16 43 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 44 H 0.08 0.46 8.14 -2.38 -0.02 0.44 16 45 H 0.09 0.53 6.39 -2.39 -0.02 0.52 16 Total: -1.00 -76.90 361.91 2.91 -74.00 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: 0.76 Total: 10.25 kcal Atomic # 6 Polarization: -8.00 SS G_CDS: 6.51 Total: -1.49 kcal Atomic # 7 Polarization: -112.67 SS G_CDS: -5.00 Total: -117.67 kcal Atomic # 8 Polarization: -23.43 SS G_CDS: -0.07 Total: -23.50 kcal Atomic # 14 Polarization: 53.45 SS G_CDS: 1.72 Total: 55.18 kcal Atomic # 16 Polarization: 4.24 SS G_CDS: -1.01 Total: 3.24 kcal Total: -76.90 2.91 -74.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044271306.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.870 kcal (2) G-P(sol) polarization free energy of solvation -76.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.997 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds