Wall clock time and date at job start Tue Mar 31 2020 13:39:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34777 * 120.00328 * 2 1 4 4 O 1.21696 * 119.99737 * 178.99506 * 3 2 1 5 5 C 1.46582 * 119.99620 * 358.98890 * 3 2 1 6 6 C 1.36647 * 125.45636 * 188.33088 * 5 3 2 7 7 C 1.37465 * 113.30057 * 179.97438 * 6 5 3 8 8 C 1.33819 * 115.10036 * 0.02562 * 7 6 5 9 9 C 1.50699 * 124.52403 * 180.02562 * 8 7 6 10 10 C 1.52995 * 109.47298 * 59.99670 * 9 8 7 11 11 C 1.53005 * 109.47300 * 179.97438 * 9 8 7 12 12 C 1.53004 * 109.47276 * 299.99557 * 9 8 7 13 13 S 1.70618 * 110.95485 * 359.75984 * 8 7 6 14 14 C 1.46508 * 119.99669 * 179.97438 * 2 1 3 15 15 C 1.53492 * 114.20307 * 59.99963 * 14 2 1 16 16 N 1.47072 * 87.98437 * 220.14671 * 15 14 2 17 17 C 1.36938 * 136.05846 * 207.08763 * 16 15 14 18 18 H 1.08000 * 119.99621 * 7.96851 * 17 16 15 19 19 C 1.38806 * 120.00165 * 187.96777 * 17 16 15 20 20 N 1.31612 * 120.00199 * 194.00308 * 19 17 16 21 21 Si 1.86808 * 119.99603 * 14.00652 * 19 17 16 22 22 H 1.48499 * 109.47159 * 269.99648 * 21 19 17 23 23 H 1.48495 * 109.46975 * 30.00064 * 21 19 17 24 24 H 1.48506 * 109.46953 * 149.99707 * 21 19 17 25 25 C 1.47058 * 87.88208 * 27.34583 * 16 15 14 26 26 H 1.08998 * 109.46997 * 276.40290 * 1 2 3 27 27 H 1.09000 * 109.46556 * 36.39770 * 1 2 3 28 28 H 1.08995 * 109.47192 * 156.39688 * 1 2 3 29 29 H 1.08005 * 123.35202 * 359.94758 * 6 5 3 30 30 H 1.08002 * 122.45199 * 180.02562 * 7 6 5 31 31 H 1.09007 * 109.47152 * 60.00305 * 10 9 8 32 32 H 1.08998 * 109.47364 * 179.97438 * 10 9 8 33 33 H 1.09001 * 109.47252 * 300.00371 * 10 9 8 34 34 H 1.09005 * 109.46620 * 59.99742 * 11 9 8 35 35 H 1.08993 * 109.47250 * 179.97438 * 11 9 8 36 36 H 1.08996 * 109.47074 * 300.00228 * 11 9 8 37 37 H 1.08998 * 109.47011 * 59.99792 * 12 9 8 38 38 H 1.08993 * 109.47737 * 180.02562 * 12 9 8 39 39 H 1.09004 * 109.47078 * 300.00132 * 12 9 8 40 40 H 1.08993 * 113.27991 * 193.06502 * 14 2 1 41 41 H 1.09005 * 113.46771 * 105.36813 * 15 14 2 42 42 H 1.08994 * 113.47189 * 334.92947 * 15 14 2 43 43 H 0.97004 * 120.00221 * 354.93322 * 20 19 17 44 44 H 1.09001 * 113.47273 * 87.43666 * 25 16 15 45 45 H 1.09000 * 113.46616 * 217.87689 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 3.3558 1.1671 0.0185 5 6 1.4062 2.4365 -0.0224 6 6 1.9662 3.6722 -0.1860 7 6 1.0457 4.6930 -0.1677 8 6 -0.2245 4.3090 0.0053 9 6 -1.4013 5.2489 0.0583 10 6 -1.4936 6.0251 -1.2569 11 6 -2.6866 4.4456 0.2671 12 6 -1.2185 6.2302 1.2179 13 16 -0.3347 2.6126 0.1507 14 6 2.1975 -1.2688 0.0006 15 6 1.9059 -2.1643 -1.2115 16 7 1.9167 -3.3164 -0.2974 17 6 2.1882 -4.6546 -0.4008 18 1 2.6005 -5.0528 -1.3161 19 6 1.9335 -5.4993 0.6708 20 7 2.4380 -6.7149 0.6850 21 14 0.8746 -4.9108 2.0928 22 1 1.7361 -4.2733 3.1208 23 1 -0.1169 -3.9232 1.5960 24 1 0.1628 -6.0682 2.6921 25 6 1.5014 -2.4000 0.7751 26 1 -0.3633 0.1146 1.0212 27 1 -0.3632 0.8272 -0.6098 28 1 -0.3633 -0.9416 -0.4115 29 1 3.0265 3.8311 -0.3164 30 1 1.3270 5.7292 -0.2845 31 1 -1.6239 5.3260 -2.0831 32 1 -2.3450 6.7046 -1.2188 33 1 -0.5779 6.5973 -1.4061 34 1 -2.6210 3.8923 1.2040 35 1 -3.5377 5.1254 0.3059 36 1 -2.8167 3.7468 -0.5592 37 1 -0.3029 6.8024 1.0688 38 1 -2.0698 6.9097 1.2565 39 1 -1.1528 5.6771 2.1549 40 1 3.2575 -1.1542 0.2268 41 1 2.7144 -2.1825 -1.9423 42 1 0.9319 -1.9785 -1.6642 43 1 2.9258 -7.0466 -0.0850 44 1 0.4208 -2.2762 0.8462 45 1 1.9653 -2.6188 1.7369 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044323344.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:39:58 Heat of formation + Delta-G solvation = 59.870232 kcal Electronic energy + Delta-G solvation = -25024.085033 eV Core-core repulsion = 21556.632389 eV Total energy + Delta-G solvation = -3467.452644 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.15573 -39.03497 -38.04954 -36.01293 -34.81969 -32.32516 -29.55230 -28.00876 -27.77623 -27.66149 -27.09929 -25.36450 -25.15800 -22.88540 -20.90423 -20.69123 -19.29456 -18.21275 -18.03926 -17.43423 -16.50653 -15.90905 -15.70270 -15.51557 -15.00263 -14.72972 -14.38507 -14.04568 -13.81021 -13.44112 -13.34745 -13.19074 -13.16214 -12.95529 -12.78940 -12.39908 -12.10509 -12.07842 -12.01205 -11.95163 -11.71102 -11.60157 -11.38127 -11.33073 -11.24274 -10.65863 -10.48133 -10.25473 -9.89304 -9.69418 -9.26288 -8.84982 -8.78334 -8.65926 -8.31752 -7.24406 -6.35116 -3.28493 0.42796 1.36361 1.81691 2.29948 2.98410 3.23509 3.38512 3.43433 3.58803 4.14978 4.42724 4.50310 4.52493 4.55688 4.79524 4.86092 4.91087 5.03274 5.14577 5.20379 5.20512 5.32884 5.33594 5.34286 5.36670 5.45171 5.46916 5.53207 5.55126 5.68600 5.73148 5.74325 5.82935 5.87673 5.95698 6.09020 6.10304 6.24504 6.25623 6.34052 6.39134 6.91621 7.03424 7.43734 8.19237 8.20065 8.92768 9.44978 10.29394 11.15016 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.025452 B = 0.002976 C = 0.002811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.834068 B = 9407.586835 C = 9959.210860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.595 5.595 3 C 0.587 3.413 4 O -0.532 6.532 5 C -0.272 4.272 6 C -0.052 4.052 7 C -0.154 4.154 8 C -0.213 4.213 9 C 0.001 3.999 10 C -0.136 4.136 11 C -0.154 4.154 12 C -0.136 4.136 13 S 0.232 5.768 14 C 0.103 3.897 15 C 0.107 3.893 16 N -0.616 5.616 17 C -0.305 4.305 18 H 0.084 0.916 19 C -0.022 4.022 20 N -0.929 5.929 21 Si 1.062 2.938 22 H -0.292 1.292 23 H -0.282 1.282 24 H -0.294 1.294 25 C 0.093 3.907 26 H 0.068 0.932 27 H 0.073 0.927 28 H 0.098 0.902 29 H 0.149 0.851 30 H 0.135 0.865 31 H 0.058 0.942 32 H 0.060 0.940 33 H 0.059 0.941 34 H 0.062 0.938 35 H 0.067 0.933 36 H 0.062 0.938 37 H 0.059 0.941 38 H 0.061 0.939 39 H 0.058 0.942 40 H 0.128 0.872 41 H 0.051 0.949 42 H 0.038 0.962 43 H 0.262 0.738 44 H 0.051 0.949 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.796 28.098 -1.239 30.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 N -0.327 5.327 3 C 0.375 3.625 4 O -0.410 6.410 5 C -0.392 4.392 6 C -0.086 4.086 7 C -0.184 4.184 8 C -0.331 4.331 9 C -0.001 4.001 10 C -0.194 4.194 11 C -0.212 4.212 12 C -0.194 4.194 13 S 0.503 5.497 14 C -0.001 4.001 15 C -0.020 4.020 16 N -0.344 5.344 17 C -0.432 4.432 18 H 0.102 0.898 19 C -0.221 4.221 20 N -0.571 5.571 21 Si 0.893 3.107 22 H -0.220 1.220 23 H -0.208 1.208 24 H -0.221 1.221 25 C -0.034 4.034 26 H 0.086 0.914 27 H 0.090 0.910 28 H 0.117 0.883 29 H 0.167 0.833 30 H 0.153 0.847 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.081 0.919 35 H 0.086 0.914 36 H 0.081 0.919 37 H 0.078 0.922 38 H 0.080 0.920 39 H 0.077 0.923 40 H 0.146 0.854 41 H 0.069 0.931 42 H 0.056 0.944 43 H 0.073 0.927 44 H 0.068 0.932 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -12.872 26.347 0.435 29.327 hybrid contribution 1.621 1.502 -1.830 2.869 sum -11.251 27.849 -1.395 30.068 Atomic orbital electron populations 1.22062 0.80418 1.03451 1.02522 1.47736 1.06505 1.06080 1.72418 1.17057 0.86749 0.82103 0.76598 1.90816 1.12728 1.86816 1.50667 1.24671 0.97729 0.97937 1.18876 1.20674 1.01242 0.89940 0.96708 1.19798 0.91472 1.00539 1.06587 1.24964 0.98924 1.02386 1.06869 1.19120 0.90806 0.93390 0.96803 1.21887 1.02083 0.99761 0.95714 1.22018 0.96532 1.00222 1.02434 1.21881 1.02014 0.98298 0.97221 1.83625 1.02441 0.96615 1.66996 1.23645 0.97895 0.79130 0.99418 1.22796 0.98753 0.86627 0.93866 1.45868 1.79652 1.03867 1.05004 1.20112 1.39993 0.79526 1.03520 0.89814 1.25805 1.00715 0.94685 1.00942 1.70892 1.37233 1.17858 1.31074 0.83792 0.76711 0.74634 0.75538 1.21969 1.20799 1.22137 1.23148 0.97646 0.87971 0.94605 0.91360 0.91012 0.88322 0.83350 0.84695 0.92309 0.92053 0.92237 0.91895 0.91394 0.91932 0.92234 0.92045 0.92288 0.85423 0.93067 0.94449 0.92728 0.93191 0.92471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.73 7.77 59.85 0.46 1.19 16 2 N -0.60 -9.33 3.12 -175.13 -0.55 -9.87 16 3 C 0.59 9.58 7.64 -12.90 -0.10 9.49 16 4 O -0.53 -10.47 16.36 5.19 0.08 -10.38 16 5 C -0.27 -3.55 6.25 -36.79 -0.23 -3.78 16 6 C -0.05 -0.62 10.02 -40.44 -0.41 -1.02 16 7 C -0.15 -1.47 9.18 -41.41 -0.38 -1.85 16 8 C -0.21 -1.89 4.97 -35.86 -0.18 -2.07 16 9 C 0.00 0.00 0.90 -155.66 -0.14 -0.14 16 10 C -0.14 -0.82 8.33 37.15 0.31 -0.51 16 11 C -0.15 -0.93 7.52 37.16 0.28 -0.65 16 12 C -0.14 -0.83 8.33 37.16 0.31 -0.52 16 13 S 0.23 2.23 16.18 -107.50 -1.74 0.49 16 14 C 0.10 1.93 4.58 -67.68 -0.31 1.62 16 15 C 0.11 2.15 8.23 -8.52 -0.07 2.08 16 16 N -0.62 -15.14 3.63 -184.66 -0.67 -15.81 16 17 C -0.31 -8.79 11.04 -15.06 -0.17 -8.95 16 18 H 0.08 2.54 8.06 -52.49 -0.42 2.11 16 19 C -0.02 -0.65 5.50 -17.44 -0.10 -0.75 16 20 N -0.93 -29.25 13.70 55.49 0.76 -28.49 16 21 Si 1.06 26.25 25.50 -169.99 -4.33 21.91 16 22 H -0.29 -7.01 6.99 56.52 0.39 -6.61 16 23 H -0.28 -6.28 5.56 56.52 0.31 -5.97 16 24 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 25 C 0.09 1.94 5.00 -8.39 -0.04 1.90 16 26 H 0.07 0.72 7.83 -51.93 -0.41 0.31 16 27 H 0.07 0.73 4.48 -22.30 -0.10 0.63 16 28 H 0.10 1.20 5.93 -51.93 -0.31 0.90 16 29 H 0.15 1.72 8.06 -52.48 -0.42 1.30 16 30 H 0.14 1.05 7.90 -52.49 -0.41 0.63 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 33 H 0.06 0.36 7.86 -51.93 -0.41 -0.05 16 34 H 0.06 0.39 7.91 -51.93 -0.41 -0.02 16 35 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.06 0.38 7.90 -51.93 -0.41 -0.03 16 37 H 0.06 0.36 7.86 -51.93 -0.41 -0.05 16 38 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 39 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.13 2.59 7.28 -51.93 -0.38 2.21 16 41 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.04 0.69 7.06 -51.93 -0.37 0.33 16 43 H 0.26 8.16 8.73 -40.82 -0.36 7.81 16 44 H 0.05 0.97 5.27 -51.93 -0.27 0.70 16 45 H 0.06 1.25 6.18 -51.93 -0.32 0.93 16 LS Contribution 360.51 15.07 5.43 5.43 Total: -1.00 -33.71 360.51 -8.60 -42.31 By element: Atomic # 1 Polarization: 5.21 SS G_CDS: -6.83 Total: -1.63 kcal Atomic # 6 Polarization: -3.21 SS G_CDS: -0.75 Total: -3.96 kcal Atomic # 7 Polarization: -53.72 SS G_CDS: -0.45 Total: -54.18 kcal Atomic # 8 Polarization: -10.47 SS G_CDS: 0.08 Total: -10.38 kcal Atomic # 14 Polarization: 26.25 SS G_CDS: -4.33 Total: 21.91 kcal Atomic # 16 Polarization: 2.23 SS G_CDS: -1.74 Total: 0.49 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -33.71 -8.60 -42.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044323344.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.179 kcal (2) G-P(sol) polarization free energy of solvation -33.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.308 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds