Wall clock time and date at job start Tue Mar 31 2020 13:39:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34777 * 120.00328 * 2 1 4 4 O 1.21696 * 119.99737 * 178.99506 * 3 2 1 5 5 C 1.46582 * 119.99620 * 358.98890 * 3 2 1 6 6 C 1.36647 * 125.45636 * 188.33088 * 5 3 2 7 7 C 1.37465 * 113.30057 * 179.97438 * 6 5 3 8 8 C 1.33819 * 115.10036 * 0.02562 * 7 6 5 9 9 C 1.50699 * 124.52403 * 180.02562 * 8 7 6 10 10 C 1.52995 * 109.47298 * 59.99670 * 9 8 7 11 11 C 1.53005 * 109.47300 * 179.97438 * 9 8 7 12 12 C 1.53004 * 109.47276 * 299.99557 * 9 8 7 13 13 S 1.70618 * 110.95485 * 359.75984 * 8 7 6 14 14 C 1.46508 * 119.99669 * 179.97438 * 2 1 3 15 15 C 1.53492 * 114.20307 * 59.99963 * 14 2 1 16 16 N 1.47072 * 87.98437 * 220.14671 * 15 14 2 17 17 C 1.36938 * 136.05846 * 207.08763 * 16 15 14 18 18 H 1.08000 * 119.99621 * 7.96851 * 17 16 15 19 19 C 1.38806 * 120.00165 * 187.96777 * 17 16 15 20 20 N 1.31612 * 120.00199 * 194.00308 * 19 17 16 21 21 Si 1.86808 * 119.99603 * 14.00652 * 19 17 16 22 22 H 1.48499 * 109.47159 * 269.99648 * 21 19 17 23 23 H 1.48495 * 109.46975 * 30.00064 * 21 19 17 24 24 H 1.48506 * 109.46953 * 149.99707 * 21 19 17 25 25 C 1.47058 * 87.88208 * 27.34583 * 16 15 14 26 26 H 1.08998 * 109.46997 * 276.40290 * 1 2 3 27 27 H 1.09000 * 109.46556 * 36.39770 * 1 2 3 28 28 H 1.08995 * 109.47192 * 156.39688 * 1 2 3 29 29 H 1.08005 * 123.35202 * 359.94758 * 6 5 3 30 30 H 1.08002 * 122.45199 * 180.02562 * 7 6 5 31 31 H 1.09007 * 109.47152 * 60.00305 * 10 9 8 32 32 H 1.08998 * 109.47364 * 179.97438 * 10 9 8 33 33 H 1.09001 * 109.47252 * 300.00371 * 10 9 8 34 34 H 1.09005 * 109.46620 * 59.99742 * 11 9 8 35 35 H 1.08993 * 109.47250 * 179.97438 * 11 9 8 36 36 H 1.08996 * 109.47074 * 300.00228 * 11 9 8 37 37 H 1.08998 * 109.47011 * 59.99792 * 12 9 8 38 38 H 1.08993 * 109.47737 * 180.02562 * 12 9 8 39 39 H 1.09004 * 109.47078 * 300.00132 * 12 9 8 40 40 H 1.08993 * 113.27991 * 193.06502 * 14 2 1 41 41 H 1.09005 * 113.46771 * 105.36813 * 15 14 2 42 42 H 1.08994 * 113.47189 * 334.92947 * 15 14 2 43 43 H 0.97004 * 120.00221 * 354.93322 * 20 19 17 44 44 H 1.09001 * 113.47273 * 87.43666 * 25 16 15 45 45 H 1.09000 * 113.46616 * 217.87689 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 3.3558 1.1671 0.0185 5 6 1.4062 2.4365 -0.0224 6 6 1.9662 3.6722 -0.1860 7 6 1.0457 4.6930 -0.1677 8 6 -0.2245 4.3090 0.0053 9 6 -1.4013 5.2489 0.0583 10 6 -1.4936 6.0251 -1.2569 11 6 -2.6866 4.4456 0.2671 12 6 -1.2185 6.2302 1.2179 13 16 -0.3347 2.6126 0.1507 14 6 2.1975 -1.2688 0.0006 15 6 1.9059 -2.1643 -1.2115 16 7 1.9167 -3.3164 -0.2974 17 6 2.1882 -4.6546 -0.4008 18 1 2.6005 -5.0528 -1.3161 19 6 1.9335 -5.4993 0.6708 20 7 2.4380 -6.7149 0.6850 21 14 0.8746 -4.9108 2.0928 22 1 1.7361 -4.2733 3.1208 23 1 -0.1169 -3.9232 1.5960 24 1 0.1628 -6.0682 2.6921 25 6 1.5014 -2.4000 0.7751 26 1 -0.3633 0.1146 1.0212 27 1 -0.3632 0.8272 -0.6098 28 1 -0.3633 -0.9416 -0.4115 29 1 3.0265 3.8311 -0.3164 30 1 1.3270 5.7292 -0.2845 31 1 -1.6239 5.3260 -2.0831 32 1 -2.3450 6.7046 -1.2188 33 1 -0.5779 6.5973 -1.4061 34 1 -2.6210 3.8923 1.2040 35 1 -3.5377 5.1254 0.3059 36 1 -2.8167 3.7468 -0.5592 37 1 -0.3029 6.8024 1.0688 38 1 -2.0698 6.9097 1.2565 39 1 -1.1528 5.6771 2.1549 40 1 3.2575 -1.1542 0.2268 41 1 2.7144 -2.1825 -1.9423 42 1 0.9319 -1.9785 -1.6642 43 1 2.9258 -7.0466 -0.0850 44 1 0.4208 -2.2762 0.8462 45 1 1.9653 -2.6188 1.7369 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044323344.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:39:58 Heat of formation + Delta-G solvation = 38.301443 kcal Electronic energy + Delta-G solvation = -25025.020326 eV Core-core repulsion = 21556.632389 eV Total energy + Delta-G solvation = -3468.387936 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.52559 -39.96786 -39.31538 -36.74581 -36.21191 -34.45293 -30.76177 -29.44363 -28.33343 -28.22279 -28.09467 -27.03598 -26.21301 -24.38296 -22.31308 -21.37343 -20.85860 -19.62157 -19.19045 -18.89491 -17.73894 -17.10702 -16.86717 -16.65869 -16.28821 -15.78525 -15.29600 -15.22849 -15.13083 -14.92389 -14.30525 -14.20242 -14.06112 -13.76937 -13.66937 -13.57428 -13.44143 -13.33863 -13.10966 -12.92184 -12.65167 -12.54166 -12.51965 -12.25627 -12.03228 -11.86702 -11.84193 -11.51934 -11.31574 -11.22073 -11.15107 -10.89280 -9.93005 -9.52156 -9.34041 -9.29742 -8.66469 -5.52438 -0.46320 0.52710 1.01395 1.39403 1.40548 1.51138 1.66614 1.74425 2.12780 2.54443 2.98318 3.13863 3.43494 3.52843 3.59853 3.93510 3.97605 4.05010 4.06411 4.23020 4.28846 4.40776 4.43925 4.50933 4.52760 4.57578 4.65523 4.75485 4.75854 4.79925 4.90517 4.95611 4.97294 5.03716 5.05095 5.09514 5.12168 5.21290 5.35764 5.39827 5.43799 5.47226 5.49777 5.90842 6.21834 6.64788 6.95911 7.27613 8.19613 8.85410 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.025452 B = 0.002976 C = 0.002811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.834068 B = 9407.586835 C = 9959.210860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.051 3.949 2 N -0.594 5.594 3 C 0.585 3.415 4 O -0.579 6.579 5 C -0.313 4.313 6 C -0.050 4.050 7 C -0.163 4.163 8 C -0.201 4.201 9 C -0.001 4.001 10 C -0.136 4.136 11 C -0.158 4.158 12 C -0.136 4.136 13 S 0.280 5.720 14 C 0.123 3.877 15 C 0.110 3.890 16 N -0.648 5.648 17 C -0.294 4.294 18 H 0.050 0.950 19 C -0.082 4.082 20 N -0.965 5.965 21 Si 1.099 2.901 22 H -0.282 1.282 23 H -0.239 1.239 24 H -0.300 1.300 25 C 0.094 3.906 26 H 0.090 0.910 27 H 0.091 0.909 28 H 0.102 0.898 29 H 0.140 0.860 30 H 0.153 0.847 31 H 0.053 0.947 32 H 0.076 0.924 33 H 0.058 0.942 34 H 0.062 0.938 35 H 0.082 0.918 36 H 0.062 0.938 37 H 0.058 0.942 38 H 0.076 0.924 39 H 0.052 0.948 40 H 0.106 0.894 41 H 0.042 0.958 42 H 0.068 0.932 43 H 0.247 0.753 44 H 0.081 0.919 45 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.232 31.638 -0.594 35.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 N -0.325 5.325 3 C 0.375 3.625 4 O -0.461 6.461 5 C -0.433 4.433 6 C -0.085 4.085 7 C -0.192 4.192 8 C -0.320 4.320 9 C -0.003 4.003 10 C -0.194 4.194 11 C -0.216 4.216 12 C -0.194 4.194 13 S 0.551 5.449 14 C 0.018 3.982 15 C -0.016 4.016 16 N -0.377 5.377 17 C -0.422 4.422 18 H 0.068 0.932 19 C -0.274 4.274 20 N -0.610 5.610 21 Si 0.923 3.077 22 H -0.209 1.209 23 H -0.163 1.163 24 H -0.228 1.228 25 C -0.032 4.032 26 H 0.108 0.892 27 H 0.109 0.891 28 H 0.121 0.879 29 H 0.158 0.842 30 H 0.171 0.829 31 H 0.072 0.928 32 H 0.095 0.905 33 H 0.077 0.923 34 H 0.081 0.919 35 H 0.101 0.899 36 H 0.081 0.919 37 H 0.077 0.923 38 H 0.095 0.905 39 H 0.072 0.928 40 H 0.124 0.876 41 H 0.060 0.940 42 H 0.086 0.914 43 H 0.056 0.944 44 H 0.099 0.901 45 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -16.345 29.946 1.047 34.132 hybrid contribution 2.680 0.583 -2.141 3.479 sum -13.666 30.529 -1.094 33.466 Atomic orbital electron populations 1.22371 0.77804 1.04618 1.04455 1.47658 1.07981 1.04648 1.72234 1.17495 0.86401 0.83128 0.75468 1.90782 1.14899 1.87585 1.52870 1.24441 1.00186 0.96514 1.22150 1.20817 1.01461 0.90340 0.95872 1.19889 0.91285 1.00921 1.07078 1.25384 0.99585 1.02606 1.04393 1.19265 0.90134 0.93273 0.97634 1.21897 1.02820 0.99816 0.94890 1.22068 0.96570 1.00521 1.02399 1.21892 1.02779 0.98273 0.96463 1.83249 0.98899 0.96833 1.65895 1.22955 0.97028 0.80370 0.97827 1.22950 0.99843 0.84934 0.93907 1.45808 1.80517 1.03220 1.08119 1.19923 1.38351 0.81849 1.02038 0.93231 1.27215 1.01740 0.94350 1.04096 1.71013 1.39440 1.19622 1.30913 0.83405 0.76175 0.75142 0.72951 1.20920 1.16298 1.22769 1.23339 0.99230 0.87235 0.93390 0.89182 0.89137 0.87914 0.84196 0.82895 0.92784 0.90511 0.92263 0.91931 0.89865 0.91874 0.92262 0.90485 0.92843 0.87629 0.93977 0.91435 0.94393 0.90116 0.93307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.04 7.77 127.77 0.99 2.03 16 2 N -0.59 -17.53 3.12 -826.22 -2.57 -20.11 16 3 C 0.58 18.73 7.64 86.42 0.66 19.39 16 4 O -0.58 -23.35 16.36 -4.34 -0.07 -23.42 16 5 C -0.31 -7.70 6.25 24.08 0.15 -7.55 16 6 C -0.05 -1.13 10.02 21.71 0.22 -0.92 16 7 C -0.16 -2.72 9.18 21.08 0.19 -2.53 16 8 C -0.20 -2.93 4.97 24.68 0.12 -2.81 16 9 C 0.00 -0.01 0.90 -52.93 -0.05 -0.06 16 10 C -0.14 -1.16 8.33 71.98 0.60 -0.56 16 11 C -0.16 -1.27 7.52 71.98 0.54 -0.73 16 12 C -0.14 -1.18 8.33 71.98 0.60 -0.58 16 13 S 0.28 4.44 16.18 -56.49 -0.91 3.53 16 14 C 0.12 4.51 4.58 45.55 0.21 4.71 16 15 C 0.11 4.32 8.23 83.17 0.68 5.00 16 16 N -0.65 -31.51 3.63 -738.12 -2.68 -34.18 16 17 C -0.29 -17.31 11.04 84.03 0.93 -16.38 16 18 H 0.05 3.16 8.06 -2.91 -0.02 3.14 16 19 C -0.08 -4.91 5.50 84.86 0.47 -4.45 16 20 N -0.97 -62.86 13.70 21.65 0.30 -62.57 16 21 Si 1.10 52.00 25.50 68.60 1.75 53.75 16 22 H -0.28 -12.83 6.99 99.48 0.70 -12.13 16 23 H -0.24 -9.51 5.56 99.48 0.55 -8.96 16 24 H -0.30 -14.40 7.11 99.48 0.71 -13.69 16 25 C 0.09 3.70 5.00 83.26 0.42 4.12 16 26 H 0.09 1.48 7.83 -2.39 -0.02 1.46 16 27 H 0.09 1.50 4.48 -21.23 -0.09 1.40 16 28 H 0.10 2.04 5.93 -2.39 -0.01 2.03 16 29 H 0.14 3.27 8.06 -2.91 -0.02 3.25 16 30 H 0.15 1.97 7.90 -2.91 -0.02 1.94 16 31 H 0.05 0.52 8.14 -2.38 -0.02 0.50 16 32 H 0.08 0.44 8.14 -2.39 -0.02 0.42 16 33 H 0.06 0.52 7.86 -2.39 -0.02 0.50 16 34 H 0.06 0.52 7.91 -2.38 -0.02 0.50 16 35 H 0.08 0.45 8.14 -2.39 -0.02 0.43 16 36 H 0.06 0.51 7.90 -2.39 -0.02 0.49 16 37 H 0.06 0.53 7.86 -2.39 -0.02 0.51 16 38 H 0.08 0.45 8.14 -2.39 -0.02 0.43 16 39 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 40 H 0.11 4.37 7.28 -2.39 -0.02 4.35 16 41 H 0.04 1.71 8.14 -2.38 -0.02 1.69 16 42 H 0.07 2.30 7.06 -2.39 -0.02 2.28 16 43 H 0.25 16.19 8.73 -92.71 -0.81 15.38 16 44 H 0.08 2.75 5.27 -2.39 -0.01 2.74 16 45 H 0.05 2.04 6.18 -2.39 -0.01 2.02 16 Total: -1.00 -76.34 360.51 3.24 -73.11 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: 0.69 Total: 11.19 kcal Atomic # 6 Polarization: -8.04 SS G_CDS: 6.73 Total: -1.30 kcal Atomic # 7 Polarization: -111.90 SS G_CDS: -4.95 Total: -116.86 kcal Atomic # 8 Polarization: -23.35 SS G_CDS: -0.07 Total: -23.42 kcal Atomic # 14 Polarization: 52.00 SS G_CDS: 1.75 Total: 53.75 kcal Atomic # 16 Polarization: 4.44 SS G_CDS: -0.91 Total: 3.53 kcal Total: -76.34 3.24 -73.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044323344.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.409 kcal (2) G-P(sol) polarization free energy of solvation -76.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.107 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds