Wall clock time and date at job start Tue Mar 31 2020 13:05:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50703 * 109.46814 * 2 1 4 4 C 1.33812 * 124.52364 * 89.98114 * 3 2 1 5 5 C 1.37471 * 115.10488 * 179.97438 * 4 3 2 6 6 C 1.36655 * 113.29459 * 0.02562 * 5 4 3 7 7 C 1.46579 * 125.45823 * 180.02562 * 6 5 4 8 8 O 1.21698 * 120.00175 * 7.41923 * 7 6 5 9 9 N 1.34771 * 119.99955 * 187.41928 * 7 6 5 10 10 C 1.46928 * 120.63266 * 18.03729 * 9 7 6 11 11 C 1.53189 * 108.77836 * 126.36604 * 10 9 7 12 12 C 1.53035 * 109.31131 * 54.63624 * 11 10 9 13 13 H 1.09007 * 109.45690 * 178.62498 * 12 11 10 14 14 N 1.46496 * 109.45992 * 58.66016 * 12 11 10 15 15 C 1.36931 * 120.00519 * 85.00056 * 14 12 11 16 16 H 1.07998 * 119.99967 * 359.97438 * 15 14 12 17 17 C 1.38815 * 120.00268 * 179.97438 * 15 14 12 18 18 N 1.31616 * 120.00015 * 179.97438 * 17 15 14 19 19 Si 1.86799 * 119.99673 * 359.97438 * 17 15 14 20 20 H 1.48496 * 109.47336 * 90.00069 * 19 17 15 21 21 H 1.48503 * 109.46840 * 209.99937 * 19 17 15 22 22 H 1.48496 * 109.47096 * 329.99535 * 19 17 15 23 23 C 1.53033 * 109.53949 * 298.63145 * 12 11 10 24 24 C 1.46924 * 120.63217 * 197.75473 * 9 7 6 25 25 H 1.09000 * 109.58911 * 113.84465 * 24 9 7 26 26 C 1.52997 * 109.58505 * 353.41847 * 24 9 7 27 27 S 1.70612 * 124.52159 * 269.97225 * 3 2 1 28 28 H 1.09001 * 109.47592 * 59.99734 * 1 2 3 29 29 H 1.09002 * 109.47355 * 180.02562 * 1 2 3 30 30 H 1.09008 * 109.46651 * 299.99868 * 1 2 3 31 31 H 1.08997 * 109.46796 * 240.00530 * 2 1 3 32 32 H 1.08997 * 109.47255 * 119.99911 * 2 1 3 33 33 H 1.08003 * 122.44823 * 0.02562 * 4 3 2 34 34 H 1.07997 * 123.35638 * 179.97438 * 5 4 3 35 35 H 1.09001 * 109.58863 * 246.15682 * 10 9 7 36 36 H 1.09001 * 109.58696 * 6.43404 * 10 9 7 37 37 H 1.09002 * 109.49642 * 174.58691 * 11 10 9 38 38 H 1.08999 * 109.49417 * 294.68302 * 11 10 9 39 39 H 0.97008 * 119.99647 * 264.99226 * 14 12 11 40 40 H 0.97007 * 120.00110 * 179.97438 * 18 17 15 41 41 H 1.08999 * 109.49727 * 181.31530 * 23 12 11 42 42 H 1.08999 * 109.50285 * 301.38292 * 23 12 11 43 43 H 1.09002 * 109.47356 * 59.73840 * 26 24 9 44 44 H 1.09004 * 109.47313 * 179.73915 * 26 24 9 45 45 H 1.09002 * 109.47118 * 299.73675 * 26 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2847 2.1360 1.1025 5 6 2.7373 3.4144 0.8775 6 6 2.8468 3.7233 -0.4492 7 6 3.3022 5.0080 -0.9884 8 8 3.7480 5.8582 -0.2404 9 7 3.2273 5.2477 -2.3125 10 6 2.3562 4.4349 -3.1723 11 6 1.4313 5.3680 -3.9600 12 6 2.2749 6.3981 -4.7144 13 1 1.6203 7.0482 -5.2952 14 7 3.1996 5.7060 -5.6156 15 6 2.7838 5.3263 -6.8638 16 1 1.7741 5.5368 -7.1839 17 6 3.6603 4.6710 -7.7178 18 7 3.2605 4.3056 -8.9174 19 14 5.4070 4.3076 -7.1644 20 1 5.4503 2.9789 -6.5026 21 1 6.3090 4.3026 -8.3441 22 1 5.8503 5.3523 -6.2067 23 6 3.0712 7.2390 -3.7141 24 6 4.0105 6.3307 -2.9227 25 1 4.7574 5.9078 -3.5946 26 6 4.7035 7.1428 -1.8268 27 16 2.3552 2.3322 -1.4057 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8901 31 1 1.8933 -0.5137 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 2.1440 1.7376 2.0964 34 1 2.9812 4.1061 1.6702 35 1 2.9654 3.8541 -3.8650 36 1 1.7606 3.7611 -2.5564 37 1 0.8467 4.7850 -4.6717 38 1 0.7603 5.8813 -3.2713 39 1 4.1065 5.5167 -5.3280 40 1 3.8730 3.8480 -9.5143 41 1 3.6538 7.9878 -4.2508 42 1 2.3847 7.7353 -3.0281 43 1 5.3637 6.4913 -1.2542 44 1 5.2876 7.9428 -2.2817 45 1 3.9529 7.5729 -1.1637 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044672599.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:05:02 Heat of formation + Delta-G solvation = 21.418805 kcal Electronic energy + Delta-G solvation = -25887.621276 eV Core-core repulsion = 22418.501254 eV Total energy + Delta-G solvation = -3469.120023 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.44635 -38.35538 -37.32787 -34.38409 -34.06296 -32.72735 -31.99993 -29.79615 -28.74809 -27.18888 -25.43063 -24.27615 -23.16239 -22.76028 -22.27016 -20.80591 -19.25535 -18.31700 -17.80854 -17.42566 -16.15975 -15.76741 -15.49034 -15.30973 -14.75667 -14.45507 -14.35758 -13.89561 -13.78791 -13.55797 -13.37296 -13.32453 -12.81929 -12.63962 -12.39040 -12.27165 -12.17864 -12.14687 -11.74535 -11.65998 -11.51208 -11.33030 -11.10692 -10.97965 -10.86392 -10.78427 -10.28391 -10.26694 -10.04976 -9.62784 -9.16812 -9.01949 -8.75453 -8.49230 -8.29884 -7.33749 -5.82511 -3.18426 0.46436 1.43326 1.87746 2.32573 3.06079 3.23565 3.31725 3.34679 3.41231 4.46238 4.53264 4.59651 4.76996 4.99398 5.02810 5.10850 5.15140 5.19330 5.28784 5.30136 5.44549 5.46026 5.53058 5.55766 5.56630 5.64854 5.68607 5.82751 5.86662 5.89943 5.93461 5.99157 6.09667 6.15491 6.26735 6.29786 6.34257 6.45201 6.55710 6.62466 6.66874 6.90543 7.54291 7.93594 8.22001 8.36470 9.14338 9.87030 10.06602 11.35748 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.012812 B = 0.004551 C = 0.003804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2184.908218 B = 6151.039107 C = 7358.855126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.056 4.056 3 C -0.220 4.220 4 C -0.158 4.158 5 C -0.055 4.055 6 C -0.273 4.273 7 C 0.591 3.409 8 O -0.529 6.529 9 N -0.605 5.605 10 C 0.108 3.892 11 C -0.144 4.144 12 C 0.180 3.820 13 H 0.063 0.937 14 N -0.747 5.747 15 C -0.244 4.244 16 H 0.092 0.908 17 C 0.008 3.992 18 N -0.932 5.932 19 Si 0.876 3.124 20 H -0.284 1.284 21 H -0.290 1.290 22 H -0.277 1.277 23 C -0.137 4.137 24 C 0.148 3.852 25 H 0.073 0.927 26 C -0.139 4.139 27 S 0.237 5.763 28 H 0.059 0.941 29 H 0.061 0.939 30 H 0.058 0.942 31 H 0.075 0.925 32 H 0.079 0.921 33 H 0.136 0.864 34 H 0.149 0.851 35 H 0.085 0.915 36 H 0.074 0.926 37 H 0.082 0.918 38 H 0.055 0.945 39 H 0.360 0.640 40 H 0.260 0.740 41 H 0.077 0.923 42 H 0.068 0.932 43 H 0.062 0.938 44 H 0.046 0.954 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.636 -4.805 19.394 20.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.095 4.095 3 C -0.339 4.339 4 C -0.188 4.188 5 C -0.088 4.088 6 C -0.394 4.394 7 C 0.380 3.620 8 O -0.408 6.408 9 N -0.338 5.338 10 C -0.016 4.016 11 C -0.185 4.185 12 C 0.070 3.930 13 H 0.081 0.919 14 N -0.390 5.390 15 C -0.373 4.373 16 H 0.109 0.891 17 C -0.188 4.188 18 N -0.580 5.580 19 Si 0.707 3.293 20 H -0.210 1.210 21 H -0.216 1.216 22 H -0.204 1.204 23 C -0.176 4.176 24 C 0.045 3.955 25 H 0.091 0.909 26 C -0.196 4.196 27 S 0.507 5.493 28 H 0.078 0.922 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.094 0.906 32 H 0.098 0.902 33 H 0.154 0.846 34 H 0.166 0.834 35 H 0.103 0.897 36 H 0.092 0.908 37 H 0.101 0.899 38 H 0.074 0.926 39 H 0.194 0.806 40 H 0.070 0.930 41 H 0.096 0.904 42 H 0.086 0.914 43 H 0.081 0.919 44 H 0.065 0.935 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -3.617 -4.712 17.997 18.952 hybrid contribution 1.339 -0.285 1.781 2.246 sum -2.278 -4.997 19.778 20.526 Atomic orbital electron populations 1.21798 0.94121 1.02080 1.02612 1.20129 0.96343 0.89698 1.03290 1.24877 1.06480 1.02196 1.00313 1.19864 1.05420 0.94251 0.99314 1.20661 0.96829 0.96250 0.95072 1.24802 1.16829 0.99652 0.98098 1.16999 0.78276 0.84896 0.81862 1.90824 1.46886 1.44749 1.58357 1.47976 1.44766 1.34612 1.06483 1.22001 0.93124 0.93386 0.93131 1.22463 0.97959 0.99265 0.98835 1.20163 0.91410 0.91733 0.89702 0.91927 1.42885 1.11084 1.70311 1.14760 1.19070 0.98796 1.30577 0.88904 0.89064 1.24633 0.97464 1.00706 0.95962 1.69689 1.35347 1.45336 1.07590 0.86685 0.86596 0.78285 0.77784 1.21023 1.21627 1.20372 1.22224 0.99092 0.98229 0.98091 1.21170 0.92619 0.87037 0.94649 0.90894 1.22225 1.00946 0.99246 0.97173 1.83832 1.59080 1.00851 1.05512 0.92210 0.91966 0.92319 0.90650 0.90202 0.84575 0.83373 0.89718 0.90850 0.89919 0.92632 0.80634 0.93030 0.90447 0.91369 0.91913 0.93512 0.90497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 9.89 37.16 0.37 -0.72 16 2 C -0.06 -0.45 6.37 -27.88 -0.18 -0.63 16 3 C -0.22 -2.31 5.53 -35.86 -0.20 -2.51 16 4 C -0.16 -1.67 9.99 -41.41 -0.41 -2.08 16 5 C -0.05 -0.67 10.02 -40.43 -0.41 -1.08 16 6 C -0.27 -3.82 6.15 -36.79 -0.23 -4.04 16 7 C 0.59 9.48 7.36 -12.90 -0.09 9.38 16 8 O -0.53 -9.29 12.53 5.19 0.07 -9.23 16 9 N -0.61 -9.59 2.98 -167.04 -0.50 -10.08 16 10 C 0.11 1.67 4.97 -3.71 -0.02 1.65 16 11 C -0.14 -2.30 5.78 -26.62 -0.15 -2.45 16 12 C 0.18 3.21 3.10 -67.90 -0.21 3.00 16 13 H 0.06 1.16 8.08 -51.93 -0.42 0.74 16 14 N -0.75 -16.33 4.11 -53.39 -0.22 -16.55 16 15 C -0.24 -6.44 10.41 -15.06 -0.16 -6.59 16 16 H 0.09 2.59 8.06 -52.49 -0.42 2.16 16 17 C 0.01 0.23 5.50 -17.43 -0.10 0.14 16 18 N -0.93 -28.28 13.97 55.49 0.78 -27.50 16 19 Si 0.88 21.39 27.73 -169.99 -4.71 16.68 16 20 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 21 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 22 H -0.28 -6.41 6.52 56.52 0.37 -6.04 16 23 C -0.14 -2.14 5.05 -26.83 -0.14 -2.27 16 24 C 0.15 2.36 3.18 -67.82 -0.22 2.14 16 25 H 0.07 1.26 6.64 -51.93 -0.34 0.92 16 26 C -0.14 -2.08 7.60 37.16 0.28 -1.80 16 27 S 0.24 2.88 18.55 -107.50 -1.99 0.88 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.43 8.14 -51.92 -0.42 0.01 16 31 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.14 1.14 8.06 -52.48 -0.42 0.72 16 34 H 0.15 1.72 8.06 -52.49 -0.42 1.29 16 35 H 0.08 1.46 7.74 -51.93 -0.40 1.06 16 36 H 0.07 1.02 3.86 -21.87 -0.08 0.94 16 37 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 38 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 39 H 0.36 7.90 3.93 -40.82 -0.16 7.74 16 40 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 41 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 42 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 43 H 0.06 1.00 6.84 -51.93 -0.36 0.65 16 44 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.08 1.21 6.70 -51.93 -0.35 0.87 16 LS Contribution 359.20 15.07 5.41 5.41 Total: -1.00 -30.35 359.20 -9.80 -40.15 By element: Atomic # 1 Polarization: 14.90 SS G_CDS: -6.78 Total: 8.12 kcal Atomic # 6 Polarization: -6.03 SS G_CDS: -1.85 Total: -7.88 kcal Atomic # 7 Polarization: -54.19 SS G_CDS: 0.06 Total: -54.13 kcal Atomic # 8 Polarization: -9.29 SS G_CDS: 0.07 Total: -9.23 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -4.71 Total: 16.68 kcal Atomic # 16 Polarization: 2.88 SS G_CDS: -1.99 Total: 0.88 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -30.35 -9.80 -40.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044672599.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.567 kcal (2) G-P(sol) polarization free energy of solvation -30.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.148 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds