Wall clock time and date at job start Tue Mar 31 2020 13:05:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50703 * 109.46814 * 2 1 4 4 C 1.33812 * 124.52364 * 89.98114 * 3 2 1 5 5 C 1.37471 * 115.10488 * 179.97438 * 4 3 2 6 6 C 1.36655 * 113.29459 * 0.02562 * 5 4 3 7 7 C 1.46579 * 125.45823 * 180.02562 * 6 5 4 8 8 O 1.21698 * 120.00175 * 7.41923 * 7 6 5 9 9 N 1.34771 * 119.99955 * 187.41928 * 7 6 5 10 10 C 1.46928 * 120.63266 * 18.03729 * 9 7 6 11 11 C 1.53189 * 108.77836 * 126.36604 * 10 9 7 12 12 C 1.53035 * 109.31131 * 54.63624 * 11 10 9 13 13 H 1.09007 * 109.45690 * 178.62498 * 12 11 10 14 14 N 1.46496 * 109.45992 * 58.66016 * 12 11 10 15 15 C 1.36931 * 120.00519 * 85.00056 * 14 12 11 16 16 H 1.07998 * 119.99967 * 359.97438 * 15 14 12 17 17 C 1.38815 * 120.00268 * 179.97438 * 15 14 12 18 18 N 1.31616 * 120.00015 * 179.97438 * 17 15 14 19 19 Si 1.86799 * 119.99673 * 359.97438 * 17 15 14 20 20 H 1.48496 * 109.47336 * 90.00069 * 19 17 15 21 21 H 1.48503 * 109.46840 * 209.99937 * 19 17 15 22 22 H 1.48496 * 109.47096 * 329.99535 * 19 17 15 23 23 C 1.53033 * 109.53949 * 298.63145 * 12 11 10 24 24 C 1.46924 * 120.63217 * 197.75473 * 9 7 6 25 25 H 1.09000 * 109.58911 * 113.84465 * 24 9 7 26 26 C 1.52997 * 109.58505 * 353.41847 * 24 9 7 27 27 S 1.70612 * 124.52159 * 269.97225 * 3 2 1 28 28 H 1.09001 * 109.47592 * 59.99734 * 1 2 3 29 29 H 1.09002 * 109.47355 * 180.02562 * 1 2 3 30 30 H 1.09008 * 109.46651 * 299.99868 * 1 2 3 31 31 H 1.08997 * 109.46796 * 240.00530 * 2 1 3 32 32 H 1.08997 * 109.47255 * 119.99911 * 2 1 3 33 33 H 1.08003 * 122.44823 * 0.02562 * 4 3 2 34 34 H 1.07997 * 123.35638 * 179.97438 * 5 4 3 35 35 H 1.09001 * 109.58863 * 246.15682 * 10 9 7 36 36 H 1.09001 * 109.58696 * 6.43404 * 10 9 7 37 37 H 1.09002 * 109.49642 * 174.58691 * 11 10 9 38 38 H 1.08999 * 109.49417 * 294.68302 * 11 10 9 39 39 H 0.97008 * 119.99647 * 264.99226 * 14 12 11 40 40 H 0.97007 * 120.00110 * 179.97438 * 18 17 15 41 41 H 1.08999 * 109.49727 * 181.31530 * 23 12 11 42 42 H 1.08999 * 109.50285 * 301.38292 * 23 12 11 43 43 H 1.09002 * 109.47356 * 59.73840 * 26 24 9 44 44 H 1.09004 * 109.47313 * 179.73915 * 26 24 9 45 45 H 1.09002 * 109.47118 * 299.73675 * 26 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2847 2.1360 1.1025 5 6 2.7373 3.4144 0.8775 6 6 2.8468 3.7233 -0.4492 7 6 3.3022 5.0080 -0.9884 8 8 3.7480 5.8582 -0.2404 9 7 3.2273 5.2477 -2.3125 10 6 2.3562 4.4349 -3.1723 11 6 1.4313 5.3680 -3.9600 12 6 2.2749 6.3981 -4.7144 13 1 1.6203 7.0482 -5.2952 14 7 3.1996 5.7060 -5.6156 15 6 2.7838 5.3263 -6.8638 16 1 1.7741 5.5368 -7.1839 17 6 3.6603 4.6710 -7.7178 18 7 3.2605 4.3056 -8.9174 19 14 5.4070 4.3076 -7.1644 20 1 5.4503 2.9789 -6.5026 21 1 6.3090 4.3026 -8.3441 22 1 5.8503 5.3523 -6.2067 23 6 3.0712 7.2390 -3.7141 24 6 4.0105 6.3307 -2.9227 25 1 4.7574 5.9078 -3.5946 26 6 4.7035 7.1428 -1.8268 27 16 2.3552 2.3322 -1.4057 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8901 31 1 1.8933 -0.5137 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 2.1440 1.7376 2.0964 34 1 2.9812 4.1061 1.6702 35 1 2.9654 3.8541 -3.8650 36 1 1.7606 3.7611 -2.5564 37 1 0.8467 4.7850 -4.6717 38 1 0.7603 5.8813 -3.2713 39 1 4.1065 5.5167 -5.3280 40 1 3.8730 3.8480 -9.5143 41 1 3.6538 7.9878 -4.2508 42 1 2.3847 7.7353 -3.0281 43 1 5.3637 6.4913 -1.2542 44 1 5.2876 7.9428 -2.2817 45 1 3.9529 7.5729 -1.1637 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044672599.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:05:01 Heat of formation + Delta-G solvation = 4.772425 kcal Electronic energy + Delta-G solvation = -25888.343118 eV Core-core repulsion = 22418.501254 eV Total energy + Delta-G solvation = -3469.841864 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.69254 -39.41770 -38.52544 -36.00648 -34.91695 -33.97584 -33.72236 -31.52163 -29.71342 -28.44441 -26.38714 -25.63752 -24.99468 -23.77071 -23.14061 -22.03658 -20.54904 -19.80059 -19.34648 -18.60102 -17.27413 -16.88151 -16.78963 -16.53725 -16.24977 -15.94460 -15.31631 -15.15319 -15.04354 -14.77650 -14.61701 -14.37475 -14.30447 -13.81189 -13.72713 -13.41943 -13.37915 -13.09768 -13.05648 -12.90870 -12.65207 -12.59842 -12.39186 -12.18202 -12.13132 -12.04777 -11.95439 -11.75207 -11.45434 -11.35939 -10.93221 -10.39283 -9.77659 -9.52835 -9.46230 -9.25512 -7.98952 -5.31055 -0.49880 0.47975 0.95715 1.37342 1.37892 1.38249 1.45358 1.86294 2.11937 2.48865 3.32913 3.44333 3.57324 3.74302 3.82967 3.89753 3.96895 4.13483 4.17642 4.23942 4.35549 4.37774 4.40512 4.48624 4.52650 4.59910 4.77539 4.80581 4.88049 4.92016 4.96340 5.01651 5.03900 5.09996 5.17285 5.20685 5.22888 5.23926 5.34022 5.36227 5.46402 5.64152 5.83147 6.24673 6.32469 7.00768 7.11002 7.86959 8.05503 9.22647 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.012812 B = 0.004551 C = 0.003804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2184.908218 B = 6151.039107 C = 7358.855126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.058 4.058 3 C -0.203 4.203 4 C -0.162 4.162 5 C -0.045 4.045 6 C -0.307 4.307 7 C 0.589 3.411 8 O -0.550 6.550 9 N -0.607 5.607 10 C 0.112 3.888 11 C -0.138 4.138 12 C 0.173 3.827 13 H 0.056 0.944 14 N -0.746 5.746 15 C -0.218 4.218 16 H 0.064 0.936 17 C -0.056 4.056 18 N -0.982 5.982 19 Si 0.936 3.064 20 H -0.279 1.279 21 H -0.299 1.299 22 H -0.256 1.256 23 C -0.126 4.126 24 C 0.144 3.856 25 H 0.060 0.940 26 C -0.126 4.126 27 S 0.221 5.779 28 H 0.049 0.951 29 H 0.077 0.923 30 H 0.060 0.940 31 H 0.078 0.922 32 H 0.099 0.901 33 H 0.164 0.836 34 H 0.153 0.847 35 H 0.064 0.936 36 H 0.093 0.907 37 H 0.070 0.930 38 H 0.077 0.923 39 H 0.362 0.638 40 H 0.256 0.744 41 H 0.082 0.918 42 H 0.085 0.915 43 H 0.050 0.950 44 H 0.063 0.937 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.573 -5.489 22.153 23.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.097 4.097 3 C -0.323 4.323 4 C -0.191 4.191 5 C -0.079 4.079 6 C -0.426 4.426 7 C 0.379 3.621 8 O -0.431 6.431 9 N -0.340 5.340 10 C -0.012 4.012 11 C -0.178 4.178 12 C 0.064 3.936 13 H 0.074 0.926 14 N -0.390 5.390 15 C -0.349 4.349 16 H 0.082 0.918 17 C -0.248 4.248 18 N -0.633 5.633 19 Si 0.764 3.236 20 H -0.206 1.206 21 H -0.226 1.226 22 H -0.181 1.181 23 C -0.165 4.165 24 C 0.042 3.958 25 H 0.078 0.922 26 C -0.183 4.183 27 S 0.491 5.509 28 H 0.068 0.932 29 H 0.096 0.904 30 H 0.079 0.921 31 H 0.097 0.903 32 H 0.118 0.882 33 H 0.182 0.818 34 H 0.171 0.829 35 H 0.083 0.917 36 H 0.110 0.890 37 H 0.089 0.911 38 H 0.095 0.905 39 H 0.196 0.804 40 H 0.065 0.935 41 H 0.101 0.899 42 H 0.103 0.897 43 H 0.069 0.931 44 H 0.082 0.918 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -3.568 -5.368 20.811 21.786 hybrid contribution 1.197 -0.108 1.032 1.584 sum -2.371 -5.476 21.843 22.644 Atomic orbital electron populations 1.21797 0.93423 1.03056 1.02227 1.20282 0.96835 0.88131 1.04441 1.25176 1.04876 1.03041 0.99163 1.20104 1.04960 0.93441 1.00609 1.20907 0.95451 0.97020 0.94565 1.24676 1.19429 0.99545 0.98992 1.17259 0.77766 0.85436 0.81596 1.90805 1.47933 1.45694 1.58717 1.47981 1.44805 1.34580 1.06612 1.21929 0.92837 0.93334 0.93080 1.22338 0.97890 0.98784 0.98821 1.20384 0.91248 0.92156 0.89767 0.92582 1.42863 1.11857 1.70516 1.13808 1.19028 0.97349 1.28368 0.90190 0.91831 1.25294 1.01490 1.01815 0.96164 1.69853 1.36743 1.47533 1.09188 0.85695 0.81778 0.78755 0.77329 1.20564 1.22580 1.18121 1.22121 0.99071 0.97759 0.97563 1.21182 0.92558 0.87253 0.94848 0.92223 1.22072 1.00517 0.99168 0.96534 1.83787 1.59504 1.00981 1.06652 0.93229 0.90385 0.92088 0.90334 0.88231 0.81835 0.82913 0.91722 0.89032 0.91131 0.90468 0.80398 0.93534 0.89928 0.89664 0.93143 0.91815 0.91170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 9.89 71.98 0.71 -1.05 16 2 C -0.06 -0.76 6.37 29.85 0.19 -0.57 16 3 C -0.20 -3.75 5.53 24.68 0.14 -3.61 16 4 C -0.16 -2.94 9.99 21.08 0.21 -2.72 16 5 C -0.05 -1.03 10.02 21.72 0.22 -0.81 16 6 C -0.31 -8.17 6.15 24.08 0.15 -8.02 16 7 C 0.59 18.34 7.36 86.42 0.64 18.98 16 8 O -0.55 -18.89 12.53 -4.34 -0.05 -18.94 16 9 N -0.61 -18.63 2.98 -800.61 -2.38 -21.01 16 10 C 0.11 3.40 4.97 86.36 0.43 3.83 16 11 C -0.14 -4.28 5.78 30.67 0.18 -4.10 16 12 C 0.17 6.02 3.10 45.01 0.14 6.16 16 13 H 0.06 2.04 8.08 -2.38 -0.02 2.02 16 14 N -0.75 -32.34 4.11 -322.84 -1.33 -33.66 16 15 C -0.22 -11.69 10.41 84.04 0.87 -10.81 16 16 H 0.06 3.72 8.06 -2.91 -0.02 3.69 16 17 C -0.06 -3.19 5.50 84.86 0.47 -2.72 16 18 N -0.98 -61.24 13.97 21.65 0.30 -60.94 16 19 Si 0.94 44.43 27.73 68.60 1.90 46.33 16 20 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 21 H -0.30 -14.56 7.11 99.48 0.71 -13.85 16 22 H -0.26 -11.11 6.52 99.48 0.65 -10.46 16 23 C -0.13 -3.72 5.05 30.53 0.15 -3.56 16 24 C 0.14 4.42 3.18 44.83 0.14 4.57 16 25 H 0.06 1.99 6.64 -2.39 -0.02 1.98 16 26 C -0.13 -3.60 7.60 71.98 0.55 -3.05 16 27 S 0.22 5.07 18.55 -56.49 -1.05 4.02 16 28 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.06 0.71 8.14 -2.38 -0.02 0.69 16 31 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.16 2.07 8.06 -2.91 -0.02 2.05 16 34 H 0.15 3.26 8.06 -2.91 -0.02 3.24 16 35 H 0.06 2.22 7.74 -2.39 -0.02 2.20 16 36 H 0.09 2.47 3.86 -21.50 -0.08 2.38 16 37 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 38 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 39 H 0.36 15.51 3.93 -92.70 -0.36 15.15 16 40 H 0.26 15.34 8.31 -92.70 -0.77 14.57 16 41 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 42 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 43 H 0.05 1.56 6.84 -2.39 -0.02 1.55 16 44 H 0.06 1.57 8.14 -2.38 -0.02 1.56 16 45 H 0.07 2.11 6.70 -2.39 -0.02 2.10 16 Total: -1.00 -65.88 359.20 3.07 -62.81 By element: Atomic # 1 Polarization: 28.40 SS G_CDS: 0.49 Total: 28.89 kcal Atomic # 6 Polarization: -12.68 SS G_CDS: 5.18 Total: -7.50 kcal Atomic # 7 Polarization: -112.21 SS G_CDS: -3.41 Total: -115.62 kcal Atomic # 8 Polarization: -18.89 SS G_CDS: -0.05 Total: -18.94 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 1.90 Total: 46.33 kcal Atomic # 16 Polarization: 5.07 SS G_CDS: -1.05 Total: 4.02 kcal Total: -65.88 3.07 -62.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044672599.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.581 kcal (2) G-P(sol) polarization free energy of solvation -65.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.808 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds