Wall clock time and date at job start Tue Mar 31 2020 13:05:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50706 * 109.46958 * 2 1 4 4 C 1.33824 * 124.51804 * 89.99813 * 3 2 1 5 5 C 1.37471 * 115.09782 * 179.70421 * 4 3 2 6 6 C 1.36650 * 113.29544 * 0.49452 * 5 4 3 7 7 C 1.46588 * 125.45291 * 179.79554 * 6 5 4 8 8 O 1.21695 * 119.99846 * 44.78627 * 7 6 5 9 9 N 1.34781 * 119.99733 * 224.77967 * 7 6 5 10 10 C 1.46926 * 120.62885 * 356.41429 * 9 7 6 11 11 C 1.53196 * 108.77156 * 126.41649 * 10 9 7 12 12 C 1.53038 * 109.31587 * 54.63177 * 11 10 9 13 13 H 1.09000 * 109.45846 * 58.64076 * 12 11 10 14 14 N 1.46500 * 109.46184 * 178.61410 * 12 11 10 15 15 C 1.36934 * 119.99929 * 275.02591 * 14 12 11 16 16 H 1.07997 * 120.00340 * 359.72817 * 15 14 12 17 17 C 1.38815 * 119.99753 * 180.02562 * 15 14 12 18 18 N 1.31623 * 119.99897 * 0.02562 * 17 15 14 19 19 Si 1.86795 * 119.99930 * 180.02562 * 17 15 14 20 20 H 1.48507 * 109.47133 * 59.99912 * 19 17 15 21 21 H 1.48496 * 109.47291 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.46970 * 299.99967 * 19 17 15 23 23 C 1.53042 * 109.52637 * 298.62849 * 12 11 10 24 24 C 1.46924 * 120.62716 * 176.44185 * 9 7 6 25 25 H 1.08999 * 109.58723 * 353.50879 * 24 9 7 26 26 C 1.52993 * 109.59013 * 113.79782 * 24 9 7 27 27 S 1.70615 * 124.52628 * 269.97523 * 3 2 1 28 28 H 1.09002 * 109.46928 * 59.99897 * 1 2 3 29 29 H 1.08998 * 109.46721 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.46906 * 299.99421 * 1 2 3 31 31 H 1.09000 * 109.47584 * 240.00712 * 2 1 3 32 32 H 1.08992 * 109.47405 * 120.00259 * 2 1 3 33 33 H 1.08004 * 122.44748 * 359.95813 * 4 3 2 34 34 H 1.07998 * 123.35105 * 180.29465 * 5 4 3 35 35 H 1.09000 * 109.58715 * 6.63022 * 10 9 7 36 36 H 1.08994 * 109.70326 * 246.26501 * 10 9 7 37 37 H 1.08999 * 109.49620 * 294.68362 * 11 10 9 38 38 H 1.09000 * 109.49709 * 174.58492 * 11 10 9 39 39 H 0.96997 * 119.99451 * 95.03013 * 14 12 11 40 40 H 0.97003 * 119.99528 * 179.97438 * 18 17 15 41 41 H 1.09000 * 109.49873 * 181.31814 * 23 12 11 42 42 H 1.08992 * 109.49937 * 301.41753 * 23 12 11 43 43 H 1.09005 * 109.47082 * 59.99587 * 26 24 9 44 44 H 1.09000 * 109.47368 * 179.97438 * 26 24 9 45 45 H 1.08998 * 109.47263 * 300.00348 * 26 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.2851 2.1359 1.1026 5 6 2.7432 3.4123 0.8776 6 6 2.8472 3.7232 -0.4490 7 6 3.3020 5.0082 -0.9880 8 8 4.2856 5.5507 -0.5197 9 7 2.6309 5.5889 -2.0024 10 6 1.4892 4.9099 -2.6304 11 6 0.2825 5.8534 -2.6101 12 6 0.6658 7.1798 -3.2704 13 1 0.9923 6.9949 -4.2938 14 7 -0.4956 8.0726 -3.2824 15 6 -1.4156 7.9857 -4.2929 16 1 -1.2828 7.2618 -5.0834 17 6 -2.5158 8.8321 -4.3046 18 7 -2.6743 9.7185 -3.3446 19 14 -3.7712 8.7130 -5.6826 20 1 -4.3655 7.3520 -5.6946 21 1 -4.8423 9.7182 -5.4647 22 1 -3.1044 8.9735 -6.9836 23 6 1.8034 7.8335 -2.4825 24 6 3.0275 6.9126 -2.5017 25 1 3.8079 7.3254 -1.8625 26 6 3.5514 6.7850 -3.9335 27 16 2.3552 2.3324 -1.4056 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 1.8935 -0.5137 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 2.1436 1.7377 2.0966 34 1 2.9927 4.1020 1.6704 35 1 1.2529 4.0025 -2.0746 36 1 1.7354 4.6537 -3.6608 37 1 -0.0203 6.0347 -1.5788 38 1 -0.5434 5.3996 -3.1579 39 1 -0.6127 8.7254 -2.5746 40 1 -3.4430 10.3102 -3.3530 41 1 2.0602 8.7891 -2.9395 42 1 1.4861 7.9959 -1.4525 43 1 2.7679 6.3767 -4.5720 44 1 3.8446 7.7679 -4.3021 45 1 4.4143 6.1193 -3.9466 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044672600.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:05:06 Heat of formation + Delta-G solvation = 0.773363 kcal Electronic energy + Delta-G solvation = -25299.060995 eV Core-core repulsion = 21829.045719 eV Total energy + Delta-G solvation = -3470.015276 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.28138 -38.35769 -37.36447 -34.55611 -34.04984 -32.51737 -31.82881 -29.49123 -28.72813 -27.30658 -25.53277 -24.16734 -23.07547 -22.69976 -22.22534 -20.99087 -19.28520 -18.34674 -17.90289 -17.04810 -16.35381 -16.10128 -15.16129 -14.96760 -14.86431 -14.44881 -14.12219 -14.04317 -13.62385 -13.55150 -13.51828 -13.07008 -13.00788 -12.84557 -12.59344 -12.35168 -12.09495 -11.84454 -11.74622 -11.68767 -11.41055 -11.28212 -10.96484 -10.93254 -10.87519 -10.75473 -10.46808 -10.24296 -9.91893 -9.73953 -9.63861 -8.94560 -8.83224 -8.53056 -8.49044 -6.99196 -5.78949 -3.08238 0.47599 1.24532 1.72411 2.35024 2.88008 3.19293 3.41555 3.46185 3.47355 4.39057 4.52491 4.56354 4.71098 4.94763 5.02841 5.09826 5.15850 5.23074 5.25930 5.31828 5.40571 5.45041 5.50860 5.56511 5.60424 5.62147 5.73606 5.79979 5.85381 5.88473 5.90502 6.01928 6.05590 6.17179 6.23151 6.28207 6.38722 6.45492 6.52340 6.62509 6.88153 7.03324 7.45704 7.66147 8.15080 8.39231 9.50392 10.07939 10.42698 11.43517 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.013626 B = 0.003530 C = 0.003027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2054.460237 B = 7929.350876 C = 9246.442984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.053 4.053 3 C -0.210 4.210 4 C -0.149 4.149 5 C -0.065 4.065 6 C -0.257 4.257 7 C 0.590 3.410 8 O -0.537 6.537 9 N -0.592 5.592 10 C 0.094 3.906 11 C -0.148 4.148 12 C 0.179 3.821 13 H 0.052 0.948 14 N -0.723 5.723 15 C -0.241 4.241 16 H 0.070 0.930 17 C -0.012 4.012 18 N -0.932 5.932 19 Si 0.906 3.094 20 H -0.286 1.286 21 H -0.291 1.291 22 H -0.286 1.286 23 C -0.134 4.134 24 C 0.143 3.857 25 H 0.097 0.903 26 C -0.161 4.161 27 S 0.218 5.782 28 H 0.059 0.941 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.141 0.859 34 H 0.148 0.852 35 H 0.081 0.919 36 H 0.071 0.929 37 H 0.060 0.940 38 H 0.076 0.924 39 H 0.384 0.616 40 H 0.256 0.744 41 H 0.078 0.922 42 H 0.063 0.937 43 H 0.065 0.935 44 H 0.070 0.930 45 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.923 -18.444 5.613 22.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.093 4.093 3 C -0.329 4.329 4 C -0.179 4.179 5 C -0.097 4.097 6 C -0.378 4.378 7 C 0.376 3.624 8 O -0.416 6.416 9 N -0.324 5.324 10 C -0.030 4.030 11 C -0.189 4.189 12 C 0.069 3.931 13 H 0.070 0.930 14 N -0.364 5.364 15 C -0.372 4.372 16 H 0.088 0.912 17 C -0.208 4.208 18 N -0.580 5.580 19 Si 0.737 3.263 20 H -0.213 1.213 21 H -0.217 1.217 22 H -0.213 1.213 23 C -0.172 4.172 24 C 0.040 3.960 25 H 0.115 0.885 26 C -0.219 4.219 27 S 0.487 5.513 28 H 0.078 0.922 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.092 0.908 32 H 0.100 0.900 33 H 0.158 0.842 34 H 0.165 0.835 35 H 0.098 0.902 36 H 0.089 0.911 37 H 0.079 0.921 38 H 0.095 0.905 39 H 0.217 0.783 40 H 0.066 0.934 41 H 0.096 0.904 42 H 0.082 0.918 43 H 0.084 0.916 44 H 0.089 0.911 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 11.218 -18.454 4.133 21.988 hybrid contribution -0.890 0.402 1.170 1.524 sum 10.328 -18.052 5.304 21.464 Atomic orbital electron populations 1.21814 0.93967 1.02124 1.02863 1.20125 0.96437 0.89420 1.03279 1.24390 1.07730 1.02244 0.98538 1.19882 1.04542 0.94061 0.99460 1.20612 0.97899 0.96450 0.94787 1.24523 1.15327 0.99749 0.98155 1.17035 0.82728 0.83165 0.79430 1.90802 1.25913 1.64715 1.60162 1.48131 1.31216 1.19431 1.33663 1.22218 0.86590 0.96213 0.98013 1.22657 0.95941 0.97963 1.02350 1.20199 0.87440 0.89139 0.96353 0.93033 1.42422 1.23609 1.40784 1.29545 1.19181 1.00929 1.15272 1.01817 0.91226 1.24742 0.98928 0.98647 0.98492 1.69656 1.30845 1.23804 1.33722 0.86292 0.81218 0.77102 0.81704 1.21281 1.21717 1.21257 1.22222 0.94827 0.98579 1.01617 1.21239 0.97536 0.81675 0.95558 0.88525 1.22150 1.01088 1.02549 0.96112 1.83178 1.59555 1.01362 1.07207 0.92176 0.91948 0.92109 0.90767 0.90017 0.84150 0.83460 0.90159 0.91085 0.92136 0.90533 0.78266 0.93440 0.90370 0.91789 0.91586 0.91145 0.92817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.90 37.16 0.37 -0.66 16 2 C -0.05 -0.38 6.37 -27.88 -0.18 -0.55 16 3 C -0.21 -2.00 5.53 -35.85 -0.20 -2.20 16 4 C -0.15 -1.49 10.00 -41.41 -0.41 -1.90 16 5 C -0.06 -0.78 10.24 -40.43 -0.41 -1.20 16 6 C -0.26 -3.44 5.49 -36.79 -0.20 -3.64 16 7 C 0.59 9.30 7.54 -12.89 -0.10 9.21 16 8 O -0.54 -9.96 16.51 5.19 0.09 -9.88 16 9 N -0.59 -8.77 2.68 -166.78 -0.45 -9.22 16 10 C 0.09 1.29 5.47 -3.71 -0.02 1.27 16 11 C -0.15 -2.51 5.66 -26.61 -0.15 -2.66 16 12 C 0.18 3.38 2.53 -67.89 -0.17 3.21 16 13 H 0.05 0.98 6.43 -51.93 -0.33 0.65 16 14 N -0.72 -17.58 5.12 -53.39 -0.27 -17.85 16 15 C -0.24 -6.47 9.93 -15.06 -0.15 -6.62 16 16 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 17 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 18 N -0.93 -27.79 13.06 55.49 0.72 -27.06 16 19 Si 0.91 21.94 29.55 -169.99 -5.02 16.92 16 20 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 21 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 22 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 23 C -0.13 -2.22 5.02 -26.61 -0.13 -2.36 16 24 C 0.14 2.11 3.20 -67.60 -0.22 1.90 16 25 H 0.10 1.49 7.02 -51.93 -0.36 1.13 16 26 C -0.16 -2.08 9.03 37.15 0.34 -1.74 16 27 S 0.22 2.30 19.84 -107.50 -2.13 0.17 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.14 1.11 8.06 -52.48 -0.42 0.68 16 34 H 0.15 1.68 8.06 -52.49 -0.42 1.26 16 35 H 0.08 1.02 4.00 -30.15 -0.12 0.90 16 36 H 0.07 0.89 7.51 -51.93 -0.39 0.50 16 37 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 39 H 0.38 10.07 7.80 -40.82 -0.32 9.75 16 40 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 41 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 42 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 43 H 0.07 0.86 5.73 -51.93 -0.30 0.57 16 44 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 45 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 369.75 15.07 5.57 5.57 Total: -1.00 -31.38 369.75 -10.10 -41.47 By element: Atomic # 1 Polarization: 15.13 SS G_CDS: -6.87 Total: 8.26 kcal Atomic # 6 Polarization: -6.64 SS G_CDS: -1.74 Total: -8.38 kcal Atomic # 7 Polarization: -54.14 SS G_CDS: 0.00 Total: -54.13 kcal Atomic # 8 Polarization: -9.96 SS G_CDS: 0.09 Total: -9.88 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Atomic # 16 Polarization: 2.30 SS G_CDS: -2.13 Total: 0.17 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -31.38 -10.10 -41.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044672600.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.246 kcal (2) G-P(sol) polarization free energy of solvation -31.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.473 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds