Wall clock time and date at job start Tue Mar 31 2020 13:05:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50706 * 109.46958 * 2 1 4 4 C 1.33824 * 124.51804 * 89.99813 * 3 2 1 5 5 C 1.37471 * 115.09782 * 179.70421 * 4 3 2 6 6 C 1.36650 * 113.29544 * 0.49452 * 5 4 3 7 7 C 1.46588 * 125.45291 * 179.79554 * 6 5 4 8 8 O 1.21695 * 119.99846 * 44.78627 * 7 6 5 9 9 N 1.34781 * 119.99733 * 224.77967 * 7 6 5 10 10 C 1.46926 * 120.62885 * 356.41429 * 9 7 6 11 11 C 1.53196 * 108.77156 * 126.41649 * 10 9 7 12 12 C 1.53038 * 109.31587 * 54.63177 * 11 10 9 13 13 H 1.09000 * 109.45846 * 58.64076 * 12 11 10 14 14 N 1.46500 * 109.46184 * 178.61410 * 12 11 10 15 15 C 1.36934 * 119.99929 * 275.02591 * 14 12 11 16 16 H 1.07997 * 120.00340 * 359.72817 * 15 14 12 17 17 C 1.38815 * 119.99753 * 180.02562 * 15 14 12 18 18 N 1.31623 * 119.99897 * 0.02562 * 17 15 14 19 19 Si 1.86795 * 119.99930 * 180.02562 * 17 15 14 20 20 H 1.48507 * 109.47133 * 59.99912 * 19 17 15 21 21 H 1.48496 * 109.47291 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.46970 * 299.99967 * 19 17 15 23 23 C 1.53042 * 109.52637 * 298.62849 * 12 11 10 24 24 C 1.46924 * 120.62716 * 176.44185 * 9 7 6 25 25 H 1.08999 * 109.58723 * 353.50879 * 24 9 7 26 26 C 1.52993 * 109.59013 * 113.79782 * 24 9 7 27 27 S 1.70615 * 124.52628 * 269.97523 * 3 2 1 28 28 H 1.09002 * 109.46928 * 59.99897 * 1 2 3 29 29 H 1.08998 * 109.46721 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.46906 * 299.99421 * 1 2 3 31 31 H 1.09000 * 109.47584 * 240.00712 * 2 1 3 32 32 H 1.08992 * 109.47405 * 120.00259 * 2 1 3 33 33 H 1.08004 * 122.44748 * 359.95813 * 4 3 2 34 34 H 1.07998 * 123.35105 * 180.29465 * 5 4 3 35 35 H 1.09000 * 109.58715 * 6.63022 * 10 9 7 36 36 H 1.08994 * 109.70326 * 246.26501 * 10 9 7 37 37 H 1.08999 * 109.49620 * 294.68362 * 11 10 9 38 38 H 1.09000 * 109.49709 * 174.58492 * 11 10 9 39 39 H 0.96997 * 119.99451 * 95.03013 * 14 12 11 40 40 H 0.97003 * 119.99528 * 179.97438 * 18 17 15 41 41 H 1.09000 * 109.49873 * 181.31814 * 23 12 11 42 42 H 1.08992 * 109.49937 * 301.41753 * 23 12 11 43 43 H 1.09005 * 109.47082 * 59.99587 * 26 24 9 44 44 H 1.09000 * 109.47368 * 179.97438 * 26 24 9 45 45 H 1.08998 * 109.47263 * 300.00348 * 26 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.2851 2.1359 1.1026 5 6 2.7432 3.4123 0.8776 6 6 2.8472 3.7232 -0.4490 7 6 3.3020 5.0082 -0.9880 8 8 4.2856 5.5507 -0.5197 9 7 2.6309 5.5889 -2.0024 10 6 1.4892 4.9099 -2.6304 11 6 0.2825 5.8534 -2.6101 12 6 0.6658 7.1798 -3.2704 13 1 0.9923 6.9949 -4.2938 14 7 -0.4956 8.0726 -3.2824 15 6 -1.4156 7.9857 -4.2929 16 1 -1.2828 7.2618 -5.0834 17 6 -2.5158 8.8321 -4.3046 18 7 -2.6743 9.7185 -3.3446 19 14 -3.7712 8.7130 -5.6826 20 1 -4.3655 7.3520 -5.6946 21 1 -4.8423 9.7182 -5.4647 22 1 -3.1044 8.9735 -6.9836 23 6 1.8034 7.8335 -2.4825 24 6 3.0275 6.9126 -2.5017 25 1 3.8079 7.3254 -1.8625 26 6 3.5514 6.7850 -3.9335 27 16 2.3552 2.3324 -1.4056 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 1.8935 -0.5137 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 2.1436 1.7377 2.0966 34 1 2.9927 4.1020 1.6704 35 1 1.2529 4.0025 -2.0746 36 1 1.7354 4.6537 -3.6608 37 1 -0.0203 6.0347 -1.5788 38 1 -0.5434 5.3996 -3.1579 39 1 -0.6127 8.7254 -2.5746 40 1 -3.4430 10.3102 -3.3530 41 1 2.0602 8.7891 -2.9395 42 1 1.4861 7.9959 -1.4525 43 1 2.7679 6.3767 -4.5720 44 1 3.8446 7.7679 -4.3021 45 1 4.4143 6.1193 -3.9466 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044672600.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:05:05 Heat of formation + Delta-G solvation = -16.885959 kcal Electronic energy + Delta-G solvation = -25299.826760 eV Core-core repulsion = 21829.045719 eV Total energy + Delta-G solvation = -3470.781042 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.51313 -39.37557 -38.55306 -36.25902 -34.80032 -33.89602 -33.41103 -31.12522 -29.66917 -28.62955 -26.43114 -25.84915 -24.52506 -23.64396 -23.16456 -22.33688 -20.43452 -19.50273 -19.16148 -18.80289 -17.48232 -17.07275 -16.71947 -16.22031 -15.97814 -15.66263 -15.32996 -15.17330 -15.02067 -14.89258 -14.51431 -14.42549 -14.09491 -14.01966 -13.69472 -13.32449 -13.17980 -13.03944 -12.88891 -12.78791 -12.70499 -12.46901 -12.38675 -12.21002 -12.13665 -12.05656 -11.97295 -11.73930 -11.61148 -11.17855 -11.09883 -10.86109 -9.87615 -9.57996 -9.40405 -8.98363 -7.91304 -5.20297 -0.42280 0.36048 0.88646 1.43636 1.49711 1.52185 1.58111 1.73879 2.07179 2.58484 3.40304 3.42478 3.72540 3.76062 3.84727 3.94902 4.05039 4.15426 4.20480 4.31126 4.36233 4.42488 4.48087 4.50803 4.52887 4.59660 4.71373 4.79951 4.81030 4.92165 4.98317 5.01914 5.03339 5.05287 5.12327 5.21606 5.25150 5.30294 5.36889 5.44390 5.49571 5.54411 5.58535 6.25716 6.30020 6.94780 7.36039 8.11138 8.34674 9.32223 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.013626 B = 0.003530 C = 0.003027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2054.460237 B = 7929.350876 C = 9246.442984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.054 4.054 3 C -0.198 4.198 4 C -0.158 4.158 5 C -0.065 4.065 6 C -0.299 4.299 7 C 0.588 3.412 8 O -0.574 6.574 9 N -0.593 5.593 10 C 0.102 3.898 11 C -0.138 4.138 12 C 0.176 3.824 13 H 0.059 0.941 14 N -0.737 5.737 15 C -0.236 4.236 16 H 0.081 0.919 17 C -0.076 4.076 18 N -0.972 5.972 19 Si 0.970 3.030 20 H -0.277 1.277 21 H -0.300 1.300 22 H -0.277 1.277 23 C -0.123 4.123 24 C 0.146 3.854 25 H 0.089 0.911 26 C -0.154 4.154 27 S 0.242 5.758 28 H 0.050 0.950 29 H 0.078 0.922 30 H 0.055 0.945 31 H 0.086 0.914 32 H 0.099 0.901 33 H 0.164 0.836 34 H 0.145 0.855 35 H 0.096 0.904 36 H 0.093 0.907 37 H 0.042 0.958 38 H 0.070 0.930 39 H 0.370 0.630 40 H 0.249 0.751 41 H 0.077 0.923 42 H 0.047 0.953 43 H 0.066 0.934 44 H 0.080 0.920 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.173 -21.357 4.733 24.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.093 4.093 3 C -0.317 4.317 4 C -0.188 4.188 5 C -0.099 4.099 6 C -0.418 4.418 7 C 0.377 3.623 8 O -0.456 6.456 9 N -0.324 5.324 10 C -0.022 4.022 11 C -0.179 4.179 12 C 0.068 3.932 13 H 0.077 0.923 14 N -0.376 5.376 15 C -0.368 4.368 16 H 0.099 0.901 17 C -0.268 4.268 18 N -0.623 5.623 19 Si 0.800 3.200 20 H -0.203 1.203 21 H -0.227 1.227 22 H -0.203 1.203 23 C -0.162 4.162 24 C 0.043 3.957 25 H 0.107 0.893 26 C -0.212 4.212 27 S 0.511 5.489 28 H 0.070 0.930 29 H 0.097 0.903 30 H 0.074 0.926 31 H 0.105 0.895 32 H 0.118 0.882 33 H 0.181 0.819 34 H 0.162 0.838 35 H 0.114 0.886 36 H 0.111 0.889 37 H 0.060 0.940 38 H 0.089 0.911 39 H 0.201 0.799 40 H 0.058 0.942 41 H 0.095 0.905 42 H 0.066 0.934 43 H 0.085 0.915 44 H 0.099 0.901 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 11.496 -21.418 3.225 24.521 hybrid contribution -0.921 1.212 1.510 2.144 sum 10.575 -20.207 4.736 23.293 Atomic orbital electron populations 1.21822 0.93729 1.03059 1.02182 1.20279 0.96479 0.87761 1.04814 1.24811 1.05860 1.03227 0.97817 1.20066 1.04645 0.93219 1.00845 1.20828 0.97252 0.97367 0.94414 1.24419 1.18132 1.00011 0.99273 1.17379 0.82198 0.83844 0.78899 1.90768 1.27560 1.66058 1.61193 1.48180 1.31252 1.19312 1.33637 1.22222 0.84767 0.95677 0.99497 1.22441 0.97219 0.97478 1.00741 1.20414 0.86318 0.89236 0.97269 0.92348 1.42648 1.24796 1.41496 1.28666 1.19607 1.00831 1.14335 1.01990 0.90140 1.25540 1.01277 0.99028 1.00996 1.69827 1.31412 1.25165 1.35926 0.85254 0.78595 0.77016 0.79168 1.20258 1.22694 1.20317 1.22085 0.94967 0.98982 1.00183 1.21176 0.96173 0.81443 0.96913 0.89272 1.22098 1.01311 1.03472 0.94313 1.82973 1.58896 0.99969 1.07096 0.93047 0.90278 0.92627 0.89515 0.88240 0.81877 0.83759 0.88637 0.88918 0.93955 0.91121 0.79909 0.94216 0.90480 0.93396 0.91469 0.90133 0.91898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 9.90 71.98 0.71 -0.91 16 2 C -0.05 -0.58 6.37 29.85 0.19 -0.39 16 3 C -0.20 -3.24 5.53 24.68 0.14 -3.11 16 4 C -0.16 -2.84 10.00 21.08 0.21 -2.63 16 5 C -0.07 -1.52 10.24 21.72 0.22 -1.30 16 6 C -0.30 -7.76 5.49 24.08 0.13 -7.63 16 7 C 0.59 18.52 7.54 86.42 0.65 19.17 16 8 O -0.57 -21.69 16.51 -4.33 -0.07 -21.76 16 9 N -0.59 -17.21 2.68 -799.80 -2.14 -19.35 16 10 C 0.10 2.67 5.47 86.36 0.47 3.14 16 11 C -0.14 -4.62 5.66 30.67 0.17 -4.44 16 12 C 0.18 6.61 2.53 45.02 0.11 6.72 16 13 H 0.06 2.14 6.43 -2.39 -0.02 2.12 16 14 N -0.74 -36.25 5.12 -322.81 -1.65 -37.90 16 15 C -0.24 -12.63 9.93 84.03 0.83 -11.79 16 16 H 0.08 4.05 7.83 -2.91 -0.02 4.03 16 17 C -0.08 -4.30 5.50 84.86 0.47 -3.84 16 18 N -0.97 -59.24 13.06 21.65 0.28 -58.96 16 19 Si 0.97 45.16 29.55 68.60 2.03 47.19 16 20 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 21 H -0.30 -14.31 7.11 99.48 0.71 -13.60 16 22 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 23 C -0.12 -4.15 5.02 30.68 0.15 -4.00 16 24 C 0.15 4.27 3.20 44.98 0.14 4.41 16 25 H 0.09 2.79 7.02 -2.39 -0.02 2.77 16 26 C -0.15 -3.72 9.03 71.98 0.65 -3.07 16 27 S 0.24 4.58 19.84 -56.49 -1.12 3.46 16 28 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.16 2.12 8.06 -2.91 -0.02 2.10 16 34 H 0.14 3.32 8.06 -2.91 -0.02 3.30 16 35 H 0.10 2.26 4.00 -16.23 -0.06 2.19 16 36 H 0.09 2.08 7.51 -2.39 -0.02 2.06 16 37 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 38 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 39 H 0.37 20.01 7.80 -92.71 -0.72 19.29 16 40 H 0.25 14.84 8.31 -92.71 -0.77 14.07 16 41 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 42 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 43 H 0.07 1.61 5.73 -2.38 -0.01 1.59 16 44 H 0.08 1.78 8.14 -2.39 -0.02 1.77 16 45 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 Total: -1.00 -68.32 369.75 2.80 -65.52 By element: Atomic # 1 Polarization: 31.25 SS G_CDS: 0.22 Total: 31.46 kcal Atomic # 6 Polarization: -14.92 SS G_CDS: 5.26 Total: -9.66 kcal Atomic # 7 Polarization: -112.70 SS G_CDS: -3.51 Total: -116.22 kcal Atomic # 8 Polarization: -21.69 SS G_CDS: -0.07 Total: -21.76 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.19 kcal Atomic # 16 Polarization: 4.58 SS G_CDS: -1.12 Total: 3.46 kcal Total: -68.32 2.80 -65.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044672600.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.631 kcal (2) G-P(sol) polarization free energy of solvation -68.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds