Wall clock time and date at job start Tue Mar 31 2020 13:05:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50694 * 109.47237 * 2 1 4 4 C 1.33820 * 124.52030 * 90.00462 * 3 2 1 5 5 C 1.37478 * 115.10330 * 179.97438 * 4 3 2 6 6 C 1.36646 * 113.29325 * 0.02562 * 5 4 3 7 7 C 1.46586 * 125.45465 * 179.97438 * 6 5 4 8 8 O 1.21700 * 119.99842 * 42.92520 * 7 6 5 9 9 N 1.34780 * 120.00148 * 222.91539 * 7 6 5 10 10 C 1.46928 * 120.62970 * 355.44944 * 9 7 6 11 11 C 1.53188 * 108.77455 * 126.41107 * 10 9 7 12 12 C 1.53046 * 109.30951 * 54.63556 * 11 10 9 13 13 H 1.09004 * 109.45968 * 58.63977 * 12 11 10 14 14 N 1.46502 * 109.45924 * 178.60990 * 12 11 10 15 15 C 1.36932 * 120.00220 * 275.02992 * 14 12 11 16 16 H 1.07997 * 120.00440 * 359.97438 * 15 14 12 17 17 C 1.38819 * 120.00047 * 180.02562 * 15 14 12 18 18 N 1.31620 * 119.99781 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 120.00243 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.47058 * 59.99703 * 19 17 15 21 21 H 1.48501 * 109.47023 * 299.99969 * 19 17 15 22 22 H 1.48496 * 109.47209 * 180.02562 * 19 17 15 23 23 C 1.53038 * 109.52589 * 298.62680 * 12 11 10 24 24 C 1.46919 * 120.62965 * 175.47202 * 9 7 6 25 25 H 1.09006 * 109.58654 * 113.80022 * 24 9 7 26 26 C 1.52997 * 109.58809 * 353.37776 * 24 9 7 27 27 S 1.70620 * 124.52724 * 270.27658 * 3 2 1 28 28 H 1.08993 * 109.47049 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.46493 * 299.99584 * 1 2 3 30 30 H 1.08997 * 109.47550 * 59.99308 * 1 2 3 31 31 H 1.09005 * 109.46493 * 240.00416 * 2 1 3 32 32 H 1.08997 * 109.47550 * 120.00692 * 2 1 3 33 33 H 1.08004 * 122.44784 * 359.97438 * 4 3 2 34 34 H 1.07997 * 123.35169 * 179.97438 * 5 4 3 35 35 H 1.08996 * 109.58439 * 6.62351 * 10 9 7 36 36 H 1.08998 * 109.70251 * 246.27127 * 10 9 7 37 37 H 1.08997 * 109.50229 * 294.68426 * 11 10 9 38 38 H 1.09003 * 109.49507 * 174.58011 * 11 10 9 39 39 H 0.97004 * 119.99631 * 95.02440 * 14 12 11 40 40 H 0.97002 * 120.00167 * 0.02562 * 18 17 15 41 41 H 1.09004 * 109.49450 * 181.32475 * 23 12 11 42 42 H 1.09000 * 109.49549 * 301.41963 * 23 12 11 43 43 H 1.08996 * 109.47791 * 66.22157 * 26 24 9 44 44 H 1.09002 * 109.47513 * 186.22777 * 26 24 9 45 45 H 1.09002 * 109.46907 * 306.21679 * 26 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.2852 2.1357 1.1026 5 6 2.7379 3.4142 0.8776 6 6 2.8469 3.7232 -0.4489 7 6 3.3012 5.0084 -0.9881 8 8 4.2613 5.5702 -0.4943 9 7 2.6559 5.5679 -2.0307 10 6 1.5588 4.8566 -2.7010 11 6 0.3274 5.7671 -2.7325 12 6 0.7011 7.1015 -3.3822 13 1 1.0731 6.9226 -4.3911 14 7 -0.4825 7.9626 -3.4441 15 6 -1.3588 7.8479 -4.4901 16 1 -1.1772 7.1229 -5.2697 17 6 -2.4800 8.6643 -4.5490 18 7 -2.7011 9.5482 -3.5991 19 14 -3.6750 8.5083 -5.9762 20 1 -4.2314 7.1318 -6.0078 21 1 -2.9633 8.7839 -7.2500 22 1 -4.7800 9.4856 -5.8056 23 6 1.7882 7.7879 -2.5521 24 6 3.0364 6.9003 -2.5188 25 1 3.4524 6.8166 -3.5229 26 6 4.0766 7.5132 -1.5791 27 16 2.3483 2.3348 -1.4056 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3632 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 2.1441 1.7374 2.0965 34 1 2.9821 4.1057 1.6704 35 1 1.3251 3.9447 -2.1516 36 1 1.8528 4.6041 -3.7198 37 1 -0.0212 5.9430 -1.7149 38 1 -0.4634 5.2896 -3.3111 39 1 -0.6455 8.6140 -2.7440 40 1 -2.0803 9.6294 -2.8582 41 1 2.0373 8.7489 -3.0023 42 1 1.4257 7.9445 -1.5362 43 1 4.9989 6.9347 -1.6311 44 1 4.2756 8.5421 -1.8787 45 1 3.6962 7.4995 -0.5576 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044672602.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:05:14 Heat of formation + Delta-G solvation = 15.315388 kcal Electronic energy + Delta-G solvation = -25357.035128 eV Core-core repulsion = 21887.650442 eV Total energy + Delta-G solvation = -3469.384687 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.48441 -38.33661 -37.31011 -34.75659 -34.16395 -32.75035 -32.09159 -29.36391 -28.62148 -27.00602 -25.47806 -24.08718 -23.10444 -22.75971 -22.26515 -20.69854 -19.90001 -18.55543 -17.72368 -17.30153 -16.30469 -16.02598 -15.53029 -15.20714 -14.82494 -14.49082 -14.29545 -14.03872 -13.69053 -13.61810 -13.45910 -13.24401 -13.05467 -12.87720 -12.48387 -12.37635 -12.11470 -11.94708 -11.77698 -11.72051 -11.47041 -11.40573 -10.94256 -10.86710 -10.85566 -10.59860 -10.46837 -10.11942 -10.00373 -9.30343 -9.13617 -8.96811 -8.81609 -8.53631 -8.47881 -7.07505 -6.12594 -3.13072 0.44536 1.23034 1.69939 2.31941 2.83184 3.16148 3.49465 3.52823 3.70518 4.37127 4.49151 4.63415 4.69297 4.92921 4.97178 5.06394 5.07730 5.19034 5.23480 5.26830 5.38645 5.40707 5.49181 5.50128 5.58360 5.60745 5.73415 5.79456 5.84957 5.86860 5.92766 5.99150 6.05487 6.12122 6.20752 6.27837 6.34199 6.37834 6.44358 6.66146 6.80422 6.94251 7.41750 7.77302 8.14285 8.72886 9.19410 10.05962 10.21159 11.35618 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.013096 B = 0.003608 C = 0.002995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2137.618413 B = 7759.188568 C = 9345.907363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.054 4.054 3 C -0.211 4.211 4 C -0.150 4.150 5 C -0.064 4.064 6 C -0.261 4.261 7 C 0.589 3.411 8 O -0.527 6.527 9 N -0.595 5.595 10 C 0.094 3.906 11 C -0.147 4.147 12 C 0.184 3.816 13 H 0.050 0.950 14 N -0.735 5.735 15 C -0.332 4.332 16 H 0.065 0.935 17 C -0.044 4.044 18 N -0.943 5.943 19 Si 1.079 2.921 20 H -0.295 1.295 21 H -0.295 1.295 22 H -0.285 1.285 23 C -0.136 4.136 24 C 0.149 3.851 25 H 0.074 0.926 26 C -0.137 4.137 27 S 0.218 5.782 28 H 0.062 0.938 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.140 0.860 34 H 0.147 0.853 35 H 0.082 0.918 36 H 0.072 0.928 37 H 0.059 0.941 38 H 0.077 0.923 39 H 0.367 0.633 40 H 0.255 0.745 41 H 0.076 0.924 42 H 0.063 0.937 43 H 0.074 0.926 44 H 0.046 0.954 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.505 -18.287 6.778 22.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.093 4.093 3 C -0.330 4.330 4 C -0.180 4.180 5 C -0.097 4.097 6 C -0.381 4.381 7 C 0.376 3.624 8 O -0.406 6.406 9 N -0.328 5.328 10 C -0.030 4.030 11 C -0.188 4.188 12 C 0.074 3.926 13 H 0.068 0.932 14 N -0.376 5.376 15 C -0.463 4.463 16 H 0.083 0.917 17 C -0.242 4.242 18 N -0.588 5.588 19 Si 0.910 3.090 20 H -0.223 1.223 21 H -0.223 1.223 22 H -0.210 1.210 23 C -0.175 4.175 24 C 0.047 3.953 25 H 0.092 0.908 26 C -0.194 4.194 27 S 0.487 5.513 28 H 0.081 0.919 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.092 0.908 32 H 0.100 0.900 33 H 0.158 0.842 34 H 0.165 0.835 35 H 0.100 0.900 36 H 0.090 0.910 37 H 0.077 0.923 38 H 0.096 0.904 39 H 0.200 0.800 40 H 0.066 0.934 41 H 0.095 0.905 42 H 0.082 0.918 43 H 0.093 0.907 44 H 0.065 0.935 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 10.494 -17.813 4.619 21.184 hybrid contribution 1.268 -0.278 2.490 2.808 sum 11.762 -18.091 7.108 22.719 Atomic orbital electron populations 1.21814 0.93971 1.02150 1.02840 1.20126 0.96429 0.89441 1.03291 1.24438 1.07637 1.02215 0.98688 1.19885 1.04656 0.94030 0.99451 1.20605 0.97867 0.96429 0.94784 1.24664 1.15341 0.99887 0.98178 1.17065 0.82580 0.83133 0.79638 1.90867 1.26921 1.62428 1.60385 1.48111 1.34516 1.18474 1.31709 1.22259 0.87575 0.95728 0.97434 1.22627 0.95787 0.98196 1.02172 1.20107 0.87225 0.89186 0.96097 0.93243 1.42434 1.24785 1.42677 1.27734 1.20027 1.04614 1.19811 1.01873 0.91738 1.25765 0.98589 0.95921 1.03904 1.70880 1.39376 1.36431 1.12137 0.83257 0.76011 0.75555 0.74202 1.22270 1.22255 1.21045 1.22322 0.94915 0.98900 1.01386 1.21329 0.95481 0.80643 0.97894 0.90816 1.22200 0.99021 0.98914 0.99244 1.83212 1.59443 1.01440 1.07248 0.91912 0.92138 0.92185 0.90752 0.90015 0.84189 0.83492 0.90014 0.90980 0.92262 0.90428 0.80004 0.93358 0.90514 0.91850 0.90693 0.93538 0.91695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 9.89 37.16 0.37 -0.67 16 2 C -0.05 -0.38 6.36 -27.88 -0.18 -0.56 16 3 C -0.21 -2.01 5.53 -35.86 -0.20 -2.21 16 4 C -0.15 -1.49 9.99 -41.41 -0.41 -1.91 16 5 C -0.06 -0.76 10.23 -40.43 -0.41 -1.18 16 6 C -0.26 -3.43 5.60 -36.79 -0.21 -3.64 16 7 C 0.59 9.01 7.37 -12.89 -0.10 8.92 16 8 O -0.53 -9.09 12.60 5.19 0.07 -9.03 16 9 N -0.60 -8.79 2.97 -166.79 -0.50 -9.28 16 10 C 0.09 1.31 5.89 -3.71 -0.02 1.29 16 11 C -0.15 -2.53 5.66 -26.61 -0.15 -2.68 16 12 C 0.18 3.56 2.73 -67.89 -0.19 3.38 16 13 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 14 N -0.73 -18.01 5.12 -53.38 -0.27 -18.29 16 15 C -0.33 -9.12 9.93 -15.06 -0.15 -9.27 16 16 H 0.06 1.73 7.83 -52.49 -0.41 1.32 16 17 C -0.04 -1.26 5.50 -17.43 -0.10 -1.36 16 18 N -0.94 -28.96 13.70 55.49 0.76 -28.20 16 19 Si 1.08 25.54 29.92 -169.99 -5.09 20.45 16 20 H -0.30 -6.65 7.11 56.52 0.40 -6.25 16 21 H -0.30 -6.67 7.11 56.52 0.40 -6.27 16 22 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 23 C -0.14 -2.29 4.84 -26.61 -0.13 -2.42 16 24 C 0.15 2.21 3.49 -67.61 -0.24 1.98 16 25 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 26 C -0.14 -1.99 7.60 37.16 0.28 -1.71 16 27 S 0.22 2.29 19.62 -107.50 -2.11 0.19 16 28 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.14 1.10 8.06 -52.48 -0.42 0.68 16 34 H 0.15 1.65 8.06 -52.49 -0.42 1.23 16 35 H 0.08 1.04 3.77 -26.81 -0.10 0.94 16 36 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.08 1.42 8.14 -51.93 -0.42 0.99 16 39 H 0.37 9.41 6.63 -40.82 -0.27 9.14 16 40 H 0.26 7.74 6.77 -40.82 -0.28 7.46 16 41 H 0.08 1.30 8.14 -51.93 -0.42 0.87 16 42 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 43 H 0.07 1.14 6.60 -51.93 -0.34 0.80 16 44 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 45 H 0.06 1.04 6.89 -51.93 -0.36 0.68 16 LS Contribution 366.26 15.07 5.52 5.52 Total: -1.00 -31.95 366.26 -10.33 -42.28 By element: Atomic # 1 Polarization: 15.27 SS G_CDS: -6.89 Total: 8.37 kcal Atomic # 6 Polarization: -10.20 SS G_CDS: -1.82 Total: -12.02 kcal Atomic # 7 Polarization: -55.76 SS G_CDS: -0.01 Total: -55.77 kcal Atomic # 8 Polarization: -9.09 SS G_CDS: 0.07 Total: -9.03 kcal Atomic # 14 Polarization: 25.54 SS G_CDS: -5.09 Total: 20.45 kcal Atomic # 16 Polarization: 2.29 SS G_CDS: -2.11 Total: 0.19 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -31.95 -10.33 -42.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044672602.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.597 kcal (2) G-P(sol) polarization free energy of solvation -31.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.281 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds