Wall clock time and date at job start Tue Mar 31 2020 13:05:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50694 * 109.47237 * 2 1 4 4 C 1.33820 * 124.52030 * 90.00462 * 3 2 1 5 5 C 1.37478 * 115.10330 * 179.97438 * 4 3 2 6 6 C 1.36646 * 113.29325 * 0.02562 * 5 4 3 7 7 C 1.46586 * 125.45465 * 179.97438 * 6 5 4 8 8 O 1.21700 * 119.99842 * 42.92520 * 7 6 5 9 9 N 1.34780 * 120.00148 * 222.91539 * 7 6 5 10 10 C 1.46928 * 120.62970 * 355.44944 * 9 7 6 11 11 C 1.53188 * 108.77455 * 126.41107 * 10 9 7 12 12 C 1.53046 * 109.30951 * 54.63556 * 11 10 9 13 13 H 1.09004 * 109.45968 * 58.63977 * 12 11 10 14 14 N 1.46502 * 109.45924 * 178.60990 * 12 11 10 15 15 C 1.36932 * 120.00220 * 275.02992 * 14 12 11 16 16 H 1.07997 * 120.00440 * 359.97438 * 15 14 12 17 17 C 1.38819 * 120.00047 * 180.02562 * 15 14 12 18 18 N 1.31620 * 119.99781 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 120.00243 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.47058 * 59.99703 * 19 17 15 21 21 H 1.48501 * 109.47023 * 299.99969 * 19 17 15 22 22 H 1.48496 * 109.47209 * 180.02562 * 19 17 15 23 23 C 1.53038 * 109.52589 * 298.62680 * 12 11 10 24 24 C 1.46919 * 120.62965 * 175.47202 * 9 7 6 25 25 H 1.09006 * 109.58654 * 113.80022 * 24 9 7 26 26 C 1.52997 * 109.58809 * 353.37776 * 24 9 7 27 27 S 1.70620 * 124.52724 * 270.27658 * 3 2 1 28 28 H 1.08993 * 109.47049 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.46493 * 299.99584 * 1 2 3 30 30 H 1.08997 * 109.47550 * 59.99308 * 1 2 3 31 31 H 1.09005 * 109.46493 * 240.00416 * 2 1 3 32 32 H 1.08997 * 109.47550 * 120.00692 * 2 1 3 33 33 H 1.08004 * 122.44784 * 359.97438 * 4 3 2 34 34 H 1.07997 * 123.35169 * 179.97438 * 5 4 3 35 35 H 1.08996 * 109.58439 * 6.62351 * 10 9 7 36 36 H 1.08998 * 109.70251 * 246.27127 * 10 9 7 37 37 H 1.08997 * 109.50229 * 294.68426 * 11 10 9 38 38 H 1.09003 * 109.49507 * 174.58011 * 11 10 9 39 39 H 0.97004 * 119.99631 * 95.02440 * 14 12 11 40 40 H 0.97002 * 120.00167 * 0.02562 * 18 17 15 41 41 H 1.09004 * 109.49450 * 181.32475 * 23 12 11 42 42 H 1.09000 * 109.49549 * 301.41963 * 23 12 11 43 43 H 1.08996 * 109.47791 * 66.22157 * 26 24 9 44 44 H 1.09002 * 109.47513 * 186.22777 * 26 24 9 45 45 H 1.09002 * 109.46907 * 306.21679 * 26 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.2852 2.1357 1.1026 5 6 2.7379 3.4142 0.8776 6 6 2.8469 3.7232 -0.4489 7 6 3.3012 5.0084 -0.9881 8 8 4.2613 5.5702 -0.4943 9 7 2.6559 5.5679 -2.0307 10 6 1.5588 4.8566 -2.7010 11 6 0.3274 5.7671 -2.7325 12 6 0.7011 7.1015 -3.3822 13 1 1.0731 6.9226 -4.3911 14 7 -0.4825 7.9626 -3.4441 15 6 -1.3588 7.8479 -4.4901 16 1 -1.1772 7.1229 -5.2697 17 6 -2.4800 8.6643 -4.5490 18 7 -2.7011 9.5482 -3.5991 19 14 -3.6750 8.5083 -5.9762 20 1 -4.2314 7.1318 -6.0078 21 1 -2.9633 8.7839 -7.2500 22 1 -4.7800 9.4856 -5.8056 23 6 1.7882 7.7879 -2.5521 24 6 3.0364 6.9003 -2.5188 25 1 3.4524 6.8166 -3.5229 26 6 4.0766 7.5132 -1.5791 27 16 2.3483 2.3348 -1.4056 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3632 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 2.1441 1.7374 2.0965 34 1 2.9821 4.1057 1.6704 35 1 1.3251 3.9447 -2.1516 36 1 1.8528 4.6041 -3.7198 37 1 -0.0212 5.9430 -1.7149 38 1 -0.4634 5.2896 -3.3111 39 1 -0.6455 8.6140 -2.7440 40 1 -2.0803 9.6294 -2.8582 41 1 2.0373 8.7489 -3.0023 42 1 1.4257 7.9445 -1.5362 43 1 4.9989 6.9347 -1.6311 44 1 4.2756 8.5421 -1.8787 45 1 3.6962 7.4995 -0.5576 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044672602.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:05:13 Heat of formation + Delta-G solvation = -2.655663 kcal Electronic energy + Delta-G solvation = -25357.814411 eV Core-core repulsion = 21887.650442 eV Total energy + Delta-G solvation = -3470.163970 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.69334 -39.31183 -38.56830 -36.48202 -34.95551 -33.98902 -33.74087 -30.94971 -29.66759 -28.35838 -26.36494 -25.79038 -24.70872 -23.69723 -23.15263 -22.04877 -21.18185 -19.57774 -19.30610 -18.75608 -17.34911 -17.17771 -16.77699 -16.46785 -16.22026 -15.88861 -15.44160 -15.22058 -15.00682 -14.92081 -14.68163 -14.32495 -14.25206 -13.87093 -13.58641 -13.44282 -13.25133 -13.14842 -12.95314 -12.72428 -12.63024 -12.49308 -12.38285 -12.14328 -12.10293 -12.01308 -11.88009 -11.71177 -11.60029 -11.21013 -10.90479 -10.39818 -9.83421 -9.58838 -9.42285 -9.10780 -8.37068 -5.31776 -0.44446 0.35517 0.86351 1.41879 1.59817 1.69573 1.71058 1.85602 2.06276 2.72674 3.37925 3.41568 3.55922 3.71606 3.75774 3.88611 3.96649 4.10288 4.13752 4.19829 4.33681 4.39641 4.41740 4.46873 4.49041 4.55223 4.60330 4.73538 4.78677 4.85956 4.89584 4.92229 5.01768 5.04811 5.10510 5.16909 5.20495 5.29134 5.34417 5.37423 5.42775 5.56659 5.61887 6.24216 6.50246 6.97252 7.09503 7.99372 8.12538 9.14605 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.013096 B = 0.003608 C = 0.002995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2137.618413 B = 7759.188568 C = 9345.907363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.055 4.055 3 C -0.199 4.199 4 C -0.159 4.159 5 C -0.064 4.064 6 C -0.300 4.300 7 C 0.587 3.413 8 O -0.554 6.554 9 N -0.598 5.598 10 C 0.103 3.897 11 C -0.135 4.135 12 C 0.179 3.821 13 H 0.050 0.950 14 N -0.749 5.749 15 C -0.326 4.326 16 H 0.071 0.929 17 C -0.106 4.106 18 N -0.978 5.978 19 Si 1.126 2.874 20 H -0.276 1.276 21 H -0.277 1.277 22 H -0.297 1.297 23 C -0.124 4.124 24 C 0.152 3.848 25 H 0.091 0.909 26 C -0.125 4.125 27 S 0.236 5.764 28 H 0.079 0.921 29 H 0.054 0.946 30 H 0.049 0.951 31 H 0.086 0.914 32 H 0.099 0.901 33 H 0.163 0.837 34 H 0.146 0.854 35 H 0.098 0.902 36 H 0.092 0.908 37 H 0.042 0.958 38 H 0.068 0.932 39 H 0.357 0.643 40 H 0.242 0.758 41 H 0.075 0.925 42 H 0.049 0.951 43 H 0.070 0.930 44 H 0.060 0.940 45 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.919 -21.011 6.117 24.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.094 4.094 3 C -0.319 4.319 4 C -0.188 4.188 5 C -0.098 4.098 6 C -0.420 4.420 7 C 0.376 3.624 8 O -0.435 6.435 9 N -0.330 5.330 10 C -0.021 4.021 11 C -0.176 4.176 12 C 0.071 3.929 13 H 0.068 0.932 14 N -0.390 5.390 15 C -0.458 4.458 16 H 0.089 0.911 17 C -0.297 4.297 18 N -0.627 5.627 19 Si 0.951 3.049 20 H -0.202 1.202 21 H -0.203 1.203 22 H -0.223 1.223 23 C -0.163 4.163 24 C 0.049 3.951 25 H 0.109 0.891 26 C -0.182 4.182 27 S 0.505 5.495 28 H 0.098 0.902 29 H 0.074 0.926 30 H 0.069 0.931 31 H 0.105 0.895 32 H 0.118 0.882 33 H 0.181 0.819 34 H 0.163 0.837 35 H 0.115 0.885 36 H 0.111 0.889 37 H 0.061 0.939 38 H 0.086 0.914 39 H 0.188 0.812 40 H 0.053 0.947 41 H 0.093 0.907 42 H 0.068 0.932 43 H 0.089 0.911 44 H 0.079 0.921 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 10.956 -20.586 3.952 23.652 hybrid contribution 1.193 0.470 2.763 3.046 sum 12.149 -20.115 6.715 24.440 Atomic orbital electron populations 1.21822 0.93771 1.03077 1.02125 1.20276 0.96441 0.87837 1.04806 1.24841 1.05877 1.03190 0.97948 1.20078 1.04721 0.93249 1.00795 1.20820 0.97191 0.97304 0.94437 1.24568 1.17998 1.00170 0.99223 1.17358 0.82172 0.83761 0.79156 1.90844 1.28090 1.63535 1.61004 1.48146 1.34603 1.18389 1.31883 1.22249 0.85751 0.95267 0.98865 1.22394 0.97136 0.97515 1.00560 1.20339 0.86165 0.89604 0.96826 0.93160 1.42664 1.25970 1.43444 1.26924 1.20384 1.04521 1.18729 1.02132 0.91093 1.27170 1.00910 0.95903 1.05676 1.70994 1.39944 1.38615 1.13115 0.82647 0.73958 0.76096 0.72178 1.20186 1.20318 1.22303 1.22170 0.95025 0.99132 0.99965 1.21313 0.94342 0.80502 0.98907 0.89131 1.22052 0.98450 0.99666 0.98061 1.83019 1.58899 1.00279 1.07258 0.90235 0.92642 0.93133 0.89547 0.88227 0.81942 0.83665 0.88466 0.88941 0.93937 0.91352 0.81167 0.94713 0.90674 0.93175 0.91128 0.92114 0.93562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 9.89 71.98 0.71 -0.95 16 2 C -0.05 -0.59 6.36 29.85 0.19 -0.40 16 3 C -0.20 -3.29 5.53 24.68 0.14 -3.15 16 4 C -0.16 -2.83 9.99 21.09 0.21 -2.62 16 5 C -0.06 -1.47 10.23 21.72 0.22 -1.25 16 6 C -0.30 -7.64 5.60 24.08 0.13 -7.50 16 7 C 0.59 17.76 7.37 86.42 0.64 18.40 16 8 O -0.55 -19.22 12.60 -4.35 -0.05 -19.28 16 9 N -0.60 -17.18 2.97 -799.83 -2.38 -19.56 16 10 C 0.10 2.71 5.89 86.36 0.51 3.22 16 11 C -0.14 -4.60 5.66 30.67 0.17 -4.43 16 12 C 0.18 6.90 2.73 45.02 0.12 7.02 16 13 H 0.05 1.94 8.08 -2.38 -0.02 1.92 16 14 N -0.75 -37.26 5.12 -322.80 -1.65 -38.91 16 15 C -0.33 -17.90 9.93 84.04 0.83 -17.07 16 16 H 0.07 3.74 7.83 -2.91 -0.02 3.71 16 17 C -0.11 -6.07 5.50 84.86 0.47 -5.60 16 18 N -0.98 -61.38 13.70 21.65 0.30 -61.09 16 19 Si 1.13 51.18 29.92 68.60 2.05 53.23 16 20 H -0.28 -11.54 7.11 99.48 0.71 -10.83 16 21 H -0.28 -11.66 7.11 99.48 0.71 -10.95 16 22 H -0.30 -13.96 7.11 99.48 0.71 -13.26 16 23 C -0.12 -4.17 4.84 30.67 0.15 -4.02 16 24 C 0.15 4.40 3.49 44.97 0.16 4.56 16 25 H 0.09 2.36 8.14 -2.38 -0.02 2.34 16 26 C -0.13 -3.60 7.60 71.98 0.55 -3.06 16 27 S 0.24 4.51 19.62 -56.49 -1.11 3.40 16 28 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.05 0.68 8.14 -2.38 -0.02 0.66 16 30 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.09 0.77 8.14 -2.38 -0.02 0.75 16 32 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.16 2.11 8.06 -2.91 -0.02 2.08 16 34 H 0.15 3.25 8.06 -2.91 -0.02 3.22 16 35 H 0.10 2.31 3.77 -18.37 -0.07 2.24 16 36 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 37 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 38 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 39 H 0.36 18.94 6.63 -92.71 -0.61 18.33 16 40 H 0.24 15.24 6.77 -92.71 -0.63 14.62 16 41 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 42 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 43 H 0.07 2.12 6.60 -2.39 -0.02 2.10 16 44 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 45 H 0.05 1.50 6.89 -2.39 -0.02 1.48 16 Total: -1.00 -69.52 366.26 2.81 -66.71 By element: Atomic # 1 Polarization: 31.90 SS G_CDS: 0.45 Total: 32.36 kcal Atomic # 6 Polarization: -22.07 SS G_CDS: 5.20 Total: -16.87 kcal Atomic # 7 Polarization: -115.83 SS G_CDS: -3.73 Total: -119.56 kcal Atomic # 8 Polarization: -19.22 SS G_CDS: -0.05 Total: -19.28 kcal Atomic # 14 Polarization: 51.18 SS G_CDS: 2.05 Total: 53.23 kcal Atomic # 16 Polarization: 4.51 SS G_CDS: -1.11 Total: 3.40 kcal Total: -69.52 2.81 -66.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044672602.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.054 kcal (2) G-P(sol) polarization free energy of solvation -69.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds