Wall clock time and date at job start Tue Mar 31 2020 13:14:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50706 * 109.47001 * 2 1 4 4 C 1.37471 * 123.35342 * 265.02427 * 3 2 1 5 5 C 1.33813 * 115.10013 * 179.97438 * 4 3 2 6 6 S 1.70613 * 110.95691 * 0.02562 * 5 4 3 7 7 C 1.36645 * 123.35014 * 84.72996 * 3 2 1 8 8 C 1.46587 * 125.45836 * 0.02562 * 7 3 2 9 9 O 1.21698 * 119.99825 * 309.51031 * 8 7 3 10 10 N 1.34778 * 120.00065 * 129.50839 * 8 7 3 11 11 C 1.46920 * 120.62967 * 4.98040 * 10 8 7 12 12 C 1.53194 * 108.77271 * 233.58371 * 11 10 8 13 13 C 1.53036 * 109.31530 * 305.36504 * 12 11 10 14 14 H 1.09002 * 109.46110 * 301.34488 * 13 12 11 15 15 N 1.46497 * 109.46151 * 181.37340 * 13 12 11 16 16 C 1.36939 * 120.00278 * 84.99936 * 15 13 12 17 17 H 1.07998 * 119.99827 * 0.02562 * 16 15 13 18 18 C 1.38814 * 120.00272 * 179.97438 * 16 15 13 19 19 N 1.31621 * 119.99800 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 120.00052 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47149 * 60.00158 * 20 18 16 22 22 H 1.48502 * 109.47190 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.46991 * 300.00070 * 20 18 16 24 24 C 1.53040 * 109.53677 * 61.36826 * 13 12 11 25 25 C 1.46919 * 120.62794 * 184.70046 * 10 8 7 26 26 H 1.09005 * 109.58771 * 246.20269 * 25 10 8 27 27 C 1.53007 * 109.59061 * 6.62656 * 25 10 8 28 28 H 1.08999 * 109.47291 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47215 * 300.00115 * 1 2 3 30 30 H 1.09004 * 109.47028 * 59.99489 * 1 2 3 31 31 H 1.09001 * 109.47269 * 240.00415 * 2 1 3 32 32 H 1.08998 * 109.47145 * 120.00095 * 2 1 3 33 33 H 1.08005 * 122.44846 * 359.94373 * 4 3 2 34 34 H 1.08003 * 124.52055 * 180.02562 * 5 4 3 35 35 H 1.09000 * 109.59183 * 353.37178 * 11 10 8 36 36 H 1.08995 * 109.58662 * 113.65780 * 11 10 8 37 37 H 1.08999 * 109.50275 * 65.32154 * 12 11 10 38 38 H 1.09005 * 109.49888 * 185.38132 * 12 11 10 39 39 H 0.97001 * 120.00050 * 265.00382 * 15 13 12 40 40 H 0.96990 * 119.99750 * 179.97438 * 19 18 16 41 41 H 1.08997 * 109.50142 * 58.58639 * 24 13 12 42 42 H 1.08997 * 109.49768 * 178.65327 * 24 13 12 43 43 H 1.08999 * 109.46935 * 52.73703 * 27 25 10 44 44 H 1.08998 * 109.47375 * 172.74173 * 27 25 10 45 45 H 1.09002 * 109.46738 * 292.74289 * 27 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3781 2.1003 -1.1440 5 6 2.8033 3.3546 -0.9526 6 16 2.7924 3.7564 0.7055 7 6 2.1838 2.1641 1.1366 8 6 1.8893 1.7062 2.4976 9 8 0.8164 1.1888 2.7467 10 7 2.8069 1.8581 3.4731 11 6 4.0617 2.5773 3.2150 12 6 5.2361 1.6811 3.6207 13 6 5.0544 1.2355 5.0735 14 1 4.9996 2.1127 5.7182 15 7 6.1923 0.4049 5.4752 16 6 7.3399 0.9926 5.9366 17 1 7.4059 2.0684 6.0047 18 6 8.4180 0.2056 6.3178 19 7 8.3373 -1.1056 6.2352 20 14 9.9831 1.0072 6.9478 21 1 9.6760 1.8067 8.1609 22 1 10.9764 -0.0438 7.2855 23 1 10.5414 1.8961 5.8974 24 6 3.7620 0.4261 5.2027 25 6 2.5685 1.3130 4.8164 26 1 2.4710 2.1306 5.5306 27 6 1.2867 0.4774 4.8110 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.3119 1.6541 -2.1253 34 1 3.1121 4.0233 -1.7425 35 1 4.1343 2.8166 2.1540 36 1 4.0825 3.4972 3.7992 37 1 5.2663 0.8052 2.9726 38 1 6.1686 2.2373 3.5242 39 1 6.1330 -0.5613 5.4143 40 1 9.0907 -1.6555 6.5011 41 1 3.8060 -0.4380 4.5397 42 1 3.6454 0.0888 6.2326 43 1 1.3386 -0.2623 4.0121 44 1 1.1797 -0.0300 5.7697 45 1 0.4287 1.1295 4.6472 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044861208.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:14:37 Heat of formation + Delta-G solvation = 15.517449 kcal Electronic energy + Delta-G solvation = -25829.547116 eV Core-core repulsion = 22360.171192 eV Total energy + Delta-G solvation = -3469.375925 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.50318 -38.51466 -37.14175 -34.51652 -32.94108 -32.78835 -31.93025 -29.65464 -28.87571 -27.00412 -25.44168 -24.28499 -22.99948 -22.54212 -22.25362 -20.51327 -19.68469 -18.30363 -17.76660 -17.10692 -16.15530 -15.97394 -15.29166 -15.16500 -14.82957 -14.17686 -14.01549 -13.81234 -13.74979 -13.58849 -13.29350 -13.08687 -13.00372 -12.69620 -12.36646 -12.14943 -12.01648 -11.91142 -11.63139 -11.57721 -11.31989 -11.00928 -10.90500 -10.89959 -10.80617 -10.74763 -10.44918 -10.27995 -9.87851 -9.72397 -9.16227 -8.93888 -8.80779 -8.46784 -8.41378 -6.99200 -5.78768 -3.08095 0.52543 1.28550 1.75748 2.34779 2.86311 3.20871 3.41908 3.46530 3.47577 4.52345 4.56119 4.66431 4.97868 5.04290 5.08330 5.15335 5.25137 5.30456 5.36415 5.36689 5.47210 5.55729 5.58608 5.63347 5.69221 5.81764 5.87227 5.90620 5.93213 6.00572 6.13433 6.20309 6.25113 6.28088 6.31056 6.40425 6.44583 6.48940 6.54310 6.73835 6.89514 7.03743 7.49495 7.66575 8.21711 8.39439 9.50602 10.07958 10.42788 11.43718 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.016630 B = 0.003492 C = 0.003219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1683.337330 B = 8016.268117 C = 8696.077077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.064 4.064 3 C -0.037 4.037 4 C -0.139 4.139 5 C -0.246 4.246 6 S 0.207 5.793 7 C -0.257 4.257 8 C 0.590 3.410 9 O -0.522 6.522 10 N -0.594 5.594 11 C 0.096 3.904 12 C -0.148 4.148 13 C 0.179 3.821 14 H 0.048 0.952 15 N -0.723 5.723 16 C -0.241 4.241 17 H 0.070 0.930 18 C -0.012 4.012 19 N -0.932 5.932 20 Si 0.906 3.094 21 H -0.286 1.286 22 H -0.291 1.291 23 H -0.286 1.286 24 C -0.134 4.134 25 C 0.148 3.852 26 H 0.073 0.927 27 C -0.136 4.136 28 H 0.054 0.946 29 H 0.075 0.925 30 H 0.048 0.952 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.141 0.859 34 H 0.166 0.834 35 H 0.081 0.919 36 H 0.070 0.930 37 H 0.060 0.940 38 H 0.076 0.924 39 H 0.384 0.616 40 H 0.256 0.744 41 H 0.064 0.936 42 H 0.076 0.924 43 H 0.065 0.935 44 H 0.045 0.955 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.871 8.108 -13.609 21.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.104 4.104 3 C -0.051 4.051 4 C -0.171 4.171 5 C -0.383 4.383 6 S 0.476 5.524 7 C -0.377 4.377 8 C 0.377 3.623 9 O -0.400 6.400 10 N -0.327 5.327 11 C -0.028 4.028 12 C -0.189 4.189 13 C 0.069 3.931 14 H 0.066 0.934 15 N -0.363 5.363 16 C -0.372 4.372 17 H 0.088 0.912 18 C -0.208 4.208 19 N -0.580 5.580 20 Si 0.737 3.263 21 H -0.213 1.213 22 H -0.217 1.217 23 H -0.213 1.213 24 C -0.173 4.173 25 C 0.046 3.954 26 H 0.091 0.909 27 C -0.193 4.193 28 H 0.074 0.926 29 H 0.094 0.906 30 H 0.067 0.933 31 H 0.090 0.910 32 H 0.092 0.908 33 H 0.159 0.841 34 H 0.184 0.816 35 H 0.099 0.901 36 H 0.088 0.912 37 H 0.078 0.922 38 H 0.094 0.906 39 H 0.217 0.783 40 H 0.066 0.934 41 H 0.082 0.918 42 H 0.095 0.905 43 H 0.084 0.916 44 H 0.064 0.936 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -14.869 9.272 -12.568 21.564 hybrid contribution 0.914 -1.038 -0.815 1.605 sum -13.956 8.234 -13.383 21.016 Atomic orbital electron populations 1.21762 0.93978 1.01759 1.02856 1.20244 0.96791 0.90563 1.02755 1.19366 0.97828 0.97492 0.90436 1.19846 1.03617 0.94122 0.99489 1.25280 1.09125 1.01551 1.02380 1.83200 1.59249 1.12035 0.97951 1.24536 1.15108 1.00078 0.97940 1.17004 0.83961 0.78808 0.82555 1.90837 1.23725 1.44282 1.81192 1.48133 1.18436 1.55131 1.11013 1.22178 0.83715 0.95364 1.01583 1.22649 0.96334 0.99205 1.00690 1.20167 0.87002 0.93810 0.92168 0.93417 1.42416 1.11490 1.05447 1.76991 1.19189 0.91258 0.91557 1.35220 0.91218 1.24741 0.98436 0.95378 1.02252 1.69651 1.31550 1.02821 1.54016 0.86287 0.83298 0.77966 0.78740 1.21254 1.21712 1.21279 1.22374 0.94203 0.98655 1.02086 1.21437 0.96127 0.96099 0.81782 0.90924 1.22187 0.96161 1.00354 1.00571 0.92645 0.90562 0.93272 0.91047 0.90819 0.84106 0.81641 0.90132 0.91178 0.92166 0.90562 0.78252 0.93440 0.91751 0.90519 0.91561 0.93625 0.90897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 9.84 37.16 0.37 -1.21 16 2 C -0.06 -0.73 5.66 -27.88 -0.16 -0.88 16 3 C -0.04 -0.44 5.16 -105.47 -0.54 -0.99 16 4 C -0.14 -1.40 9.96 -41.41 -0.41 -1.81 16 5 C -0.25 -2.26 10.92 29.18 0.32 -1.95 16 6 S 0.21 2.13 20.23 -107.50 -2.18 -0.05 16 7 C -0.26 -3.33 5.34 -36.79 -0.20 -3.52 16 8 C 0.59 8.68 6.74 -12.89 -0.09 8.59 16 9 O -0.52 -8.38 10.52 5.19 0.05 -8.32 16 10 N -0.59 -8.55 2.97 -166.53 -0.49 -9.05 16 11 C 0.10 1.31 5.96 -3.71 -0.02 1.29 16 12 C -0.15 -2.51 5.66 -26.61 -0.15 -2.66 16 13 C 0.18 3.41 2.73 -67.89 -0.19 3.22 16 14 H 0.05 0.92 8.08 -51.93 -0.42 0.50 16 15 N -0.72 -17.66 5.12 -53.39 -0.27 -17.93 16 16 C -0.24 -6.51 9.93 -15.06 -0.15 -6.66 16 17 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 18 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 19 N -0.93 -27.84 13.06 55.49 0.72 -27.11 16 20 Si 0.91 22.02 29.55 -169.99 -5.02 17.00 16 21 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 22 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 23 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 24 C -0.13 -2.23 4.86 -26.38 -0.13 -2.35 16 25 C 0.15 2.15 3.51 -67.37 -0.24 1.91 16 26 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 27 C -0.14 -1.91 7.62 37.16 0.28 -1.63 16 28 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.08 0.99 6.38 -51.93 -0.33 0.66 16 30 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.07 0.68 8.12 -51.93 -0.42 0.25 16 32 H 0.07 0.96 7.79 -51.93 -0.40 0.55 16 33 H 0.14 1.12 8.06 -52.48 -0.42 0.69 16 34 H 0.17 1.09 8.06 -52.48 -0.42 0.67 16 35 H 0.08 1.02 4.22 -35.41 -0.15 0.87 16 36 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 37 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 39 H 0.38 10.10 7.80 -40.82 -0.32 9.78 16 40 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 41 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 42 H 0.08 1.29 8.14 -51.93 -0.42 0.86 16 43 H 0.07 1.02 6.82 -51.93 -0.35 0.67 16 44 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 45 H 0.07 1.07 6.67 -51.93 -0.35 0.72 16 LS Contribution 363.58 15.07 5.48 5.48 Total: -1.00 -30.25 363.58 -10.05 -40.30 By element: Atomic # 1 Polarization: 15.71 SS G_CDS: -6.94 Total: 8.77 kcal Atomic # 6 Polarization: -7.68 SS G_CDS: -1.40 Total: -9.08 kcal Atomic # 7 Polarization: -54.05 SS G_CDS: -0.04 Total: -54.10 kcal Atomic # 8 Polarization: -8.38 SS G_CDS: 0.05 Total: -8.32 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Atomic # 16 Polarization: 2.13 SS G_CDS: -2.18 Total: -0.05 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -30.25 -10.05 -40.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044861208.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.819 kcal (2) G-P(sol) polarization free energy of solvation -30.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.302 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds