Wall clock time and date at job start Tue Mar 31 2020 13:14:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50706 * 109.47001 * 2 1 4 4 C 1.37471 * 123.35342 * 265.02427 * 3 2 1 5 5 C 1.33813 * 115.10013 * 179.97438 * 4 3 2 6 6 S 1.70613 * 110.95691 * 0.02562 * 5 4 3 7 7 C 1.36645 * 123.35014 * 84.72996 * 3 2 1 8 8 C 1.46587 * 125.45836 * 0.02562 * 7 3 2 9 9 O 1.21698 * 119.99825 * 309.51031 * 8 7 3 10 10 N 1.34778 * 120.00065 * 129.50839 * 8 7 3 11 11 C 1.46920 * 120.62967 * 4.98040 * 10 8 7 12 12 C 1.53194 * 108.77271 * 233.58371 * 11 10 8 13 13 C 1.53036 * 109.31530 * 305.36504 * 12 11 10 14 14 H 1.09002 * 109.46110 * 301.34488 * 13 12 11 15 15 N 1.46497 * 109.46151 * 181.37340 * 13 12 11 16 16 C 1.36939 * 120.00278 * 84.99936 * 15 13 12 17 17 H 1.07998 * 119.99827 * 0.02562 * 16 15 13 18 18 C 1.38814 * 120.00272 * 179.97438 * 16 15 13 19 19 N 1.31621 * 119.99800 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 120.00052 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47149 * 60.00158 * 20 18 16 22 22 H 1.48502 * 109.47190 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.46991 * 300.00070 * 20 18 16 24 24 C 1.53040 * 109.53677 * 61.36826 * 13 12 11 25 25 C 1.46919 * 120.62794 * 184.70046 * 10 8 7 26 26 H 1.09005 * 109.58771 * 246.20269 * 25 10 8 27 27 C 1.53007 * 109.59061 * 6.62656 * 25 10 8 28 28 H 1.08999 * 109.47291 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47215 * 300.00115 * 1 2 3 30 30 H 1.09004 * 109.47028 * 59.99489 * 1 2 3 31 31 H 1.09001 * 109.47269 * 240.00415 * 2 1 3 32 32 H 1.08998 * 109.47145 * 120.00095 * 2 1 3 33 33 H 1.08005 * 122.44846 * 359.94373 * 4 3 2 34 34 H 1.08003 * 124.52055 * 180.02562 * 5 4 3 35 35 H 1.09000 * 109.59183 * 353.37178 * 11 10 8 36 36 H 1.08995 * 109.58662 * 113.65780 * 11 10 8 37 37 H 1.08999 * 109.50275 * 65.32154 * 12 11 10 38 38 H 1.09005 * 109.49888 * 185.38132 * 12 11 10 39 39 H 0.97001 * 120.00050 * 265.00382 * 15 13 12 40 40 H 0.96990 * 119.99750 * 179.97438 * 19 18 16 41 41 H 1.08997 * 109.50142 * 58.58639 * 24 13 12 42 42 H 1.08997 * 109.49768 * 178.65327 * 24 13 12 43 43 H 1.08999 * 109.46935 * 52.73703 * 27 25 10 44 44 H 1.08998 * 109.47375 * 172.74173 * 27 25 10 45 45 H 1.09002 * 109.46738 * 292.74289 * 27 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3781 2.1003 -1.1440 5 6 2.8033 3.3546 -0.9526 6 16 2.7924 3.7564 0.7055 7 6 2.1838 2.1641 1.1366 8 6 1.8893 1.7062 2.4976 9 8 0.8164 1.1888 2.7467 10 7 2.8069 1.8581 3.4731 11 6 4.0617 2.5773 3.2150 12 6 5.2361 1.6811 3.6207 13 6 5.0544 1.2355 5.0735 14 1 4.9996 2.1127 5.7182 15 7 6.1923 0.4049 5.4752 16 6 7.3399 0.9926 5.9366 17 1 7.4059 2.0684 6.0047 18 6 8.4180 0.2056 6.3178 19 7 8.3373 -1.1056 6.2352 20 14 9.9831 1.0072 6.9478 21 1 9.6760 1.8067 8.1609 22 1 10.9764 -0.0438 7.2855 23 1 10.5414 1.8961 5.8974 24 6 3.7620 0.4261 5.2027 25 6 2.5685 1.3130 4.8164 26 1 2.4710 2.1306 5.5306 27 6 1.2867 0.4774 4.8110 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.3119 1.6541 -2.1253 34 1 3.1121 4.0233 -1.7425 35 1 4.1343 2.8166 2.1540 36 1 4.0825 3.4972 3.7992 37 1 5.2663 0.8052 2.9726 38 1 6.1686 2.2373 3.5242 39 1 6.1330 -0.5613 5.4143 40 1 9.0907 -1.6555 6.5011 41 1 3.8060 -0.4380 4.5397 42 1 3.6454 0.0888 6.2326 43 1 1.3386 -0.2623 4.0121 44 1 1.1797 -0.0300 5.7697 45 1 0.4287 1.1295 4.6472 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044861208.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:14:36 Heat of formation + Delta-G solvation = -1.230262 kcal Electronic energy + Delta-G solvation = -25830.273351 eV Core-core repulsion = 22360.171192 eV Total energy + Delta-G solvation = -3470.102160 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.64423 -39.48448 -38.39768 -36.17214 -34.12512 -33.78349 -33.59636 -31.16057 -30.05211 -28.33733 -26.37234 -25.95638 -24.53427 -23.58192 -23.19715 -21.83869 -20.99240 -19.21408 -19.15500 -18.73727 -17.15386 -17.12829 -16.70122 -16.33819 -16.15884 -15.54628 -15.48753 -15.03674 -14.88886 -14.72370 -14.64006 -14.33756 -14.03588 -13.92811 -13.48859 -13.38594 -13.09000 -13.05416 -12.92782 -12.80966 -12.65873 -12.61547 -12.33999 -12.21732 -12.05829 -11.96124 -11.87152 -11.75622 -11.63034 -11.39416 -10.88873 -10.27677 -9.74995 -9.57318 -9.29653 -8.98924 -7.92034 -5.21104 -0.32417 0.43854 0.97435 1.49007 1.50317 1.51628 1.57553 1.77887 2.13668 2.57817 3.40785 3.48991 3.71826 3.84684 3.89624 4.00452 4.06298 4.14426 4.22018 4.30377 4.34530 4.48445 4.49553 4.53883 4.59760 4.68762 4.72925 4.76585 4.83506 4.90249 4.97784 5.03685 5.05280 5.10770 5.14598 5.24225 5.36938 5.38757 5.43642 5.47808 5.51249 5.54134 5.67676 6.28991 6.36175 7.09938 7.35339 8.10350 8.33975 9.31427 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.016630 B = 0.003492 C = 0.003219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1683.337330 B = 8016.268117 C = 8696.077077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.065 4.065 3 C -0.040 4.040 4 C -0.151 4.151 5 C -0.231 4.231 6 S 0.226 5.774 7 C -0.297 4.297 8 C 0.588 3.412 9 O -0.542 6.542 10 N -0.599 5.599 11 C 0.104 3.896 12 C -0.136 4.136 13 C 0.174 3.826 14 H 0.051 0.949 15 N -0.737 5.737 16 C -0.237 4.237 17 H 0.080 0.920 18 C -0.076 4.076 19 N -0.972 5.972 20 Si 0.971 3.029 21 H -0.277 1.277 22 H -0.299 1.299 23 H -0.277 1.277 24 C -0.122 4.122 25 C 0.152 3.848 26 H 0.089 0.911 27 C -0.123 4.123 28 H 0.063 0.937 29 H 0.050 0.950 30 H 0.062 0.938 31 H 0.091 0.909 32 H 0.048 0.952 33 H 0.164 0.836 34 H 0.197 0.803 35 H 0.096 0.904 36 H 0.090 0.910 37 H 0.041 0.959 38 H 0.068 0.932 39 H 0.370 0.630 40 H 0.249 0.751 41 H 0.049 0.951 42 H 0.073 0.927 43 H 0.047 0.953 44 H 0.057 0.943 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.160 10.368 -15.144 23.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.105 4.105 3 C -0.055 4.055 4 C -0.182 4.182 5 C -0.368 4.368 6 S 0.495 5.505 7 C -0.416 4.416 8 C 0.376 3.624 9 O -0.422 6.422 10 N -0.331 5.331 11 C -0.019 4.019 12 C -0.177 4.177 13 C 0.066 3.934 14 H 0.069 0.931 15 N -0.376 5.376 16 C -0.369 4.369 17 H 0.097 0.903 18 C -0.268 4.268 19 N -0.623 5.623 20 Si 0.800 3.200 21 H -0.204 1.204 22 H -0.226 1.226 23 H -0.203 1.203 24 C -0.161 4.161 25 C 0.049 3.951 26 H 0.107 0.893 27 C -0.181 4.181 28 H 0.082 0.918 29 H 0.069 0.931 30 H 0.081 0.919 31 H 0.110 0.890 32 H 0.067 0.933 33 H 0.182 0.818 34 H 0.215 0.785 35 H 0.114 0.886 36 H 0.108 0.892 37 H 0.060 0.940 38 H 0.086 0.914 39 H 0.201 0.799 40 H 0.058 0.942 41 H 0.067 0.933 42 H 0.092 0.908 43 H 0.066 0.934 44 H 0.076 0.924 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -15.192 11.587 -14.119 23.757 hybrid contribution 0.923 -1.712 -0.419 1.990 sum -14.269 9.874 -14.538 22.638 Atomic orbital electron populations 1.21682 0.93630 1.02136 1.02223 1.20263 0.97077 0.90679 1.02465 1.19628 0.97247 0.97634 0.91015 1.20051 1.03912 0.94450 0.99782 1.25695 1.07132 1.01565 1.02424 1.83058 1.58577 1.10027 0.98837 1.24491 1.17826 1.02144 0.97173 1.17282 0.83617 0.78256 0.83252 1.90820 1.24541 1.45070 1.81759 1.48168 1.18645 1.55328 1.10975 1.22148 0.81895 0.94946 1.02939 1.22413 0.97618 0.99028 0.98635 1.20396 0.86298 0.93470 0.93239 0.93071 1.42637 1.12426 1.05261 1.77276 1.19607 0.91856 0.92051 1.33402 0.90255 1.25541 1.01719 0.95884 1.03655 1.69820 1.32129 1.04236 1.56081 0.85248 0.79407 0.76874 0.78468 1.20356 1.22593 1.20274 1.22222 0.94066 0.98223 1.01623 1.21396 0.94995 0.96179 0.82483 0.89317 1.22035 0.95755 0.99767 1.00499 0.91812 0.93067 0.91858 0.89034 0.93330 0.81815 0.78541 0.88623 0.89183 0.93983 0.91386 0.79858 0.94181 0.93259 0.90806 0.93376 0.92426 0.91213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.93 9.84 71.98 0.71 -2.22 16 2 C -0.07 -1.45 5.66 29.85 0.17 -1.28 16 3 C -0.04 -0.91 5.16 -20.42 -0.11 -1.01 16 4 C -0.15 -2.60 9.96 21.08 0.21 -2.39 16 5 C -0.23 -3.44 10.92 66.81 0.73 -2.71 16 6 S 0.23 4.09 20.23 -56.49 -1.14 2.95 16 7 C -0.30 -7.37 5.34 24.08 0.13 -7.24 16 8 C 0.59 17.13 6.74 86.42 0.58 17.72 16 9 O -0.54 -17.64 10.52 -4.34 -0.05 -17.69 16 10 N -0.60 -16.82 2.97 -798.99 -2.37 -19.19 16 11 C 0.10 2.72 5.96 86.36 0.52 3.23 16 12 C -0.14 -4.58 5.66 30.67 0.17 -4.40 16 13 C 0.17 6.63 2.73 45.02 0.12 6.75 16 14 H 0.05 1.93 8.08 -2.39 -0.02 1.91 16 15 N -0.74 -36.55 5.12 -322.82 -1.65 -38.20 16 16 C -0.24 -12.83 9.93 84.03 0.83 -12.00 16 17 H 0.08 4.05 7.83 -2.91 -0.02 4.03 16 18 C -0.08 -4.30 5.50 84.86 0.47 -3.83 16 19 N -0.97 -59.36 13.06 21.65 0.28 -59.08 16 20 Si 0.97 45.42 29.55 68.60 2.03 47.45 16 21 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 22 H -0.30 -14.29 7.11 99.48 0.71 -13.58 16 23 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 24 C -0.12 -4.09 4.86 30.82 0.15 -3.94 16 25 C 0.15 4.33 3.51 45.13 0.16 4.49 16 26 H 0.09 2.27 8.14 -2.38 -0.02 2.26 16 27 C -0.12 -3.47 7.62 71.98 0.55 -2.92 16 28 H 0.06 1.19 8.14 -2.39 -0.02 1.18 16 29 H 0.05 1.34 6.38 -2.39 -0.02 1.33 16 30 H 0.06 1.13 8.14 -2.38 -0.02 1.11 16 31 H 0.09 1.60 8.12 -2.39 -0.02 1.58 16 32 H 0.05 1.30 7.79 -2.39 -0.02 1.28 16 33 H 0.16 2.00 8.06 -2.91 -0.02 1.98 16 34 H 0.20 1.66 8.06 -2.91 -0.02 1.63 16 35 H 0.10 2.24 4.22 -12.89 -0.05 2.19 16 36 H 0.09 2.02 8.14 -2.39 -0.02 2.01 16 37 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.07 2.40 8.14 -2.38 -0.02 2.38 16 39 H 0.37 20.12 7.80 -92.71 -0.72 19.40 16 40 H 0.25 14.88 8.31 -92.72 -0.77 14.11 16 41 H 0.05 1.78 8.14 -2.39 -0.02 1.77 16 42 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 43 H 0.05 1.52 6.82 -2.39 -0.02 1.51 16 44 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 45 H 0.07 2.02 6.67 -2.39 -0.02 2.01 16 Total: -1.00 -66.18 363.58 2.71 -63.47 By element: Atomic # 1 Polarization: 31.83 SS G_CDS: 0.22 Total: 32.05 kcal Atomic # 6 Polarization: -17.16 SS G_CDS: 5.39 Total: -11.77 kcal Atomic # 7 Polarization: -112.73 SS G_CDS: -3.74 Total: -116.47 kcal Atomic # 8 Polarization: -17.64 SS G_CDS: -0.05 Total: -17.69 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.45 kcal Atomic # 16 Polarization: 4.09 SS G_CDS: -1.14 Total: 2.95 kcal Total: -66.18 2.71 -63.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044861208.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.237 kcal (2) G-P(sol) polarization free energy of solvation -66.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds