Wall clock time and date at job start Tue Mar 31 2020 13:14:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50701 * 109.47096 * 2 1 4 4 C 1.37472 * 123.35425 * 265.02835 * 3 2 1 5 5 C 1.33813 * 115.10430 * 179.97438 * 4 3 2 6 6 S 1.70618 * 110.95374 * 359.97438 * 5 4 3 7 7 C 1.36643 * 123.35241 * 84.73189 * 3 2 1 8 8 C 1.46590 * 125.45695 * 0.02562 * 7 3 2 9 9 O 1.21694 * 120.00240 * 309.33358 * 8 7 3 10 10 N 1.34776 * 119.99487 * 129.33056 * 8 7 3 11 11 C 1.46925 * 120.63746 * 4.60475 * 10 8 7 12 12 C 1.52762 * 109.00955 * 233.58621 * 11 10 8 13 13 C 1.53035 * 109.38247 * 305.58112 * 12 11 10 14 14 H 1.09002 * 109.45250 * 181.25387 * 13 12 11 15 15 N 1.46497 * 109.46329 * 301.22546 * 13 12 11 16 16 C 1.36940 * 119.99694 * 275.06493 * 15 13 12 17 17 H 1.08000 * 120.00106 * 0.02562 * 16 15 13 18 18 C 1.38812 * 120.00037 * 179.97438 * 16 15 13 19 19 N 1.31626 * 119.99967 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00028 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47255 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.46977 * 120.00814 * 20 18 16 23 23 H 1.48508 * 109.47242 * 240.00093 * 20 18 16 24 24 C 1.53047 * 109.53728 * 61.24238 * 13 12 11 25 25 C 1.46927 * 120.62907 * 184.88483 * 10 8 7 26 26 H 1.09002 * 109.58691 * 246.15791 * 25 10 8 27 27 C 1.53006 * 109.58573 * 6.58013 * 25 10 8 28 28 H 1.08991 * 109.47293 * 59.99914 * 1 2 3 29 29 H 1.08997 * 109.46916 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47000 * 299.99286 * 1 2 3 31 31 H 1.09002 * 109.47618 * 120.00430 * 2 1 3 32 32 H 1.09000 * 109.47236 * 240.00284 * 2 1 3 33 33 H 1.08002 * 122.44475 * 359.97438 * 4 3 2 34 34 H 1.08001 * 124.52440 * 179.97438 * 5 4 3 35 35 H 1.09006 * 109.57875 * 353.41854 * 11 10 8 36 36 H 1.08995 * 109.58990 * 113.83924 * 11 10 8 37 37 H 1.08997 * 109.56201 * 185.55157 * 12 11 10 38 38 H 1.08999 * 109.38780 * 65.51210 * 12 11 10 39 39 H 0.97001 * 120.00204 * 95.06420 * 15 13 12 40 40 H 0.96996 * 119.99815 * 179.97438 * 19 18 16 41 41 H 1.09000 * 109.50139 * 178.68403 * 24 13 12 42 42 H 1.09000 * 109.52151 * 58.60019 * 24 13 12 43 43 H 1.08997 * 109.47178 * 52.92919 * 27 25 10 44 44 H 1.09004 * 109.46787 * 172.92993 * 27 25 10 45 45 H 1.09002 * 109.46974 * 292.92707 * 27 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3781 2.1003 -1.1440 5 6 2.8033 3.3545 -0.9527 6 16 2.7912 3.7568 0.7053 7 6 2.1839 2.1640 1.1366 8 6 1.8895 1.7061 2.4976 9 8 0.8153 1.1917 2.7475 10 7 2.8085 1.8548 3.4721 11 6 4.0688 2.5634 3.2110 12 6 5.2371 1.6668 3.6169 13 6 5.0552 1.2223 5.0699 14 1 5.8995 0.6006 5.3678 15 7 4.9878 2.4017 5.9364 16 6 6.1408 2.9815 6.3944 17 1 7.0997 2.5696 6.1165 18 6 6.0770 4.0993 7.2150 19 7 4.9083 4.6016 7.5533 20 14 7.6497 4.8906 7.8392 21 1 8.8213 4.1413 7.3186 22 1 7.7150 6.2984 7.3711 23 1 7.6630 4.8617 9.3239 24 6 3.7592 0.4188 5.2009 25 6 2.5718 1.3061 4.8144 26 1 2.4766 2.1218 5.5311 27 6 1.2889 0.4723 4.8087 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5137 0.8901 31 1 1.8934 -0.5139 0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 2.3114 1.6543 -2.1253 34 1 3.1129 4.0230 -1.7425 35 1 4.1423 2.7987 2.1491 36 1 4.0982 3.4838 3.7942 37 1 6.1718 2.2190 3.5198 38 1 5.2631 0.7908 2.9689 39 1 4.1265 2.7718 6.1857 40 1 4.8638 5.3824 8.1270 41 1 3.6421 0.0827 6.2311 42 1 3.7982 -0.4458 4.5383 43 1 1.3399 -0.2674 4.0097 44 1 1.1812 -0.0352 5.7674 45 1 0.4318 1.1254 4.6450 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044861210.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:14:45 Heat of formation + Delta-G solvation = 17.885191 kcal Electronic energy + Delta-G solvation = -26265.354250 eV Core-core repulsion = 22796.080999 eV Total energy + Delta-G solvation = -3469.273252 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.39289 -38.47321 -37.14509 -34.19450 -32.84985 -32.69903 -31.91004 -29.44207 -28.82480 -26.97802 -25.36034 -24.11322 -23.48762 -22.45055 -22.21094 -20.68093 -18.95857 -18.18890 -17.45609 -17.21127 -16.02461 -15.83652 -15.22318 -15.10307 -14.58768 -14.12474 -13.96980 -13.90259 -13.74668 -13.48162 -13.20516 -12.99576 -12.94417 -12.66748 -12.23274 -12.03587 -11.97919 -11.88953 -11.56557 -11.38971 -11.13910 -10.94910 -10.93786 -10.83779 -10.75141 -10.59584 -10.42069 -10.23192 -9.95107 -9.65522 -9.02212 -8.97512 -8.68570 -8.35479 -8.15124 -7.00089 -5.80422 -3.09428 0.63661 1.41023 1.89211 2.43364 3.05202 3.36792 3.40381 3.46588 3.48575 4.56147 4.67239 4.73490 5.04096 5.13464 5.22540 5.30550 5.32135 5.40091 5.41306 5.53351 5.58904 5.63148 5.70776 5.74147 5.78709 5.89110 5.92850 5.97064 6.00957 6.13803 6.16907 6.28489 6.30205 6.33968 6.38673 6.45544 6.50396 6.61079 6.72462 6.77451 6.83803 7.05577 7.67751 7.71035 8.37939 8.38749 9.49536 10.05988 10.41012 11.42045 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.017394 B = 0.004018 C = 0.003561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1609.321143 B = 6966.599559 C = 7861.537025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.061 4.061 3 C -0.043 4.043 4 C -0.141 4.141 5 C -0.252 4.252 6 S 0.219 5.781 7 C -0.253 4.253 8 C 0.587 3.413 9 O -0.526 6.526 10 N -0.589 5.589 11 C 0.104 3.896 12 C -0.147 4.147 13 C 0.173 3.827 14 H 0.051 0.949 15 N -0.722 5.722 16 C -0.239 4.239 17 H 0.071 0.929 18 C -0.012 4.012 19 N -0.932 5.932 20 Si 0.904 3.096 21 H -0.281 1.281 22 H -0.292 1.292 23 H -0.292 1.292 24 C -0.133 4.133 25 C 0.147 3.853 26 H 0.082 0.918 27 C -0.135 4.135 28 H 0.048 0.952 29 H 0.053 0.947 30 H 0.076 0.924 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.139 0.861 34 H 0.165 0.835 35 H 0.073 0.927 36 H 0.087 0.913 37 H 0.074 0.926 38 H 0.048 0.952 39 H 0.384 0.616 40 H 0.255 0.745 41 H 0.075 0.925 42 H 0.060 0.940 43 H 0.062 0.938 44 H 0.043 0.957 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.765 -6.655 -16.835 18.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.101 4.101 3 C -0.058 4.058 4 C -0.172 4.172 5 C -0.389 4.389 6 S 0.489 5.511 7 C -0.374 4.374 8 C 0.373 3.627 9 O -0.405 6.405 10 N -0.321 5.321 11 C -0.019 4.019 12 C -0.188 4.188 13 C 0.063 3.937 14 H 0.069 0.931 15 N -0.364 5.364 16 C -0.370 4.370 17 H 0.089 0.911 18 C -0.208 4.208 19 N -0.580 5.580 20 Si 0.736 3.264 21 H -0.206 1.206 22 H -0.219 1.219 23 H -0.219 1.219 24 C -0.172 4.172 25 C 0.044 3.956 26 H 0.100 0.900 27 C -0.192 4.192 28 H 0.067 0.933 29 H 0.072 0.928 30 H 0.095 0.905 31 H 0.090 0.910 32 H 0.087 0.913 33 H 0.157 0.843 34 H 0.183 0.817 35 H 0.091 0.909 36 H 0.105 0.895 37 H 0.093 0.907 38 H 0.067 0.933 39 H 0.219 0.781 40 H 0.064 0.936 41 H 0.094 0.906 42 H 0.079 0.921 43 H 0.081 0.919 44 H 0.061 0.939 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -5.744 -5.517 -15.812 17.705 hybrid contribution 0.528 -0.384 -0.612 0.895 sum -5.216 -5.900 -16.424 18.215 Atomic orbital electron populations 1.21765 0.94055 1.01628 1.02974 1.20205 0.96775 0.90662 1.02411 1.19320 0.98492 0.97496 0.90442 1.19801 1.03929 0.94178 0.99336 1.25313 1.09327 1.01543 1.02712 1.83501 1.58544 1.11724 0.97354 1.24599 1.14679 1.00079 0.98027 1.17005 0.84113 0.78989 0.82553 1.90824 1.23674 1.44844 1.81184 1.48098 1.18246 1.54922 1.10803 1.21936 0.82631 0.96571 1.00776 1.22412 0.97847 0.98749 0.99788 1.20199 0.94820 0.89422 0.89260 0.93053 1.42518 1.06610 1.30664 1.56643 1.19279 0.86588 1.07620 1.23502 0.91136 1.24718 0.96519 0.98820 1.00707 1.69664 1.22263 1.25359 1.40710 0.86164 0.82752 0.79119 0.78411 1.20606 1.21940 1.21944 1.22246 0.95408 0.97881 1.01657 1.21288 0.95511 0.96531 0.82231 0.90019 1.22194 0.96690 1.00248 1.00054 0.93277 0.92779 0.90466 0.91004 0.91260 0.84306 0.81750 0.90865 0.89458 0.90703 0.93321 0.78141 0.93554 0.90616 0.92094 0.91920 0.93863 0.90816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 9.85 37.16 0.37 -1.28 16 2 C -0.06 -0.70 5.66 -27.88 -0.16 -0.85 16 3 C -0.04 -0.54 5.16 -105.48 -0.54 -1.09 16 4 C -0.14 -1.50 9.96 -41.41 -0.41 -1.91 16 5 C -0.25 -2.58 10.92 29.18 0.32 -2.26 16 6 S 0.22 2.68 20.27 -107.50 -2.18 0.50 16 7 C -0.25 -3.61 5.32 -36.79 -0.20 -3.80 16 8 C 0.59 9.56 6.74 -12.89 -0.09 9.48 16 9 O -0.53 -9.21 10.53 5.19 0.05 -9.16 16 10 N -0.59 -9.72 2.98 -167.04 -0.50 -10.22 16 11 C 0.10 1.72 5.68 -3.93 -0.02 1.69 16 12 C -0.15 -2.47 5.76 -26.84 -0.15 -2.62 16 13 C 0.17 3.25 3.10 -67.89 -0.21 3.04 16 14 H 0.05 0.99 8.08 -51.93 -0.42 0.57 16 15 N -0.72 -16.83 4.31 -53.38 -0.23 -17.06 16 16 C -0.24 -6.26 9.93 -15.06 -0.15 -6.41 16 17 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 18 C -0.01 -0.32 5.50 -17.43 -0.10 -0.41 16 19 N -0.93 -27.13 13.06 55.49 0.72 -26.41 16 20 Si 0.90 21.73 29.55 -169.99 -5.02 16.71 16 21 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 22 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 23 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 24 C -0.13 -2.19 5.07 -26.61 -0.13 -2.32 16 25 C 0.15 2.48 3.20 -67.60 -0.22 2.26 16 26 H 0.08 1.57 6.64 -51.93 -0.34 1.22 16 27 C -0.13 -2.12 7.61 37.16 0.28 -1.83 16 28 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.08 1.06 6.38 -51.93 -0.33 0.73 16 31 H 0.07 0.91 7.79 -51.93 -0.40 0.51 16 32 H 0.07 0.64 8.12 -51.93 -0.42 0.22 16 33 H 0.14 1.16 8.06 -52.49 -0.42 0.73 16 34 H 0.16 1.25 8.06 -52.49 -0.42 0.83 16 35 H 0.07 1.08 4.26 -36.22 -0.15 0.93 16 36 H 0.09 1.68 7.74 -51.93 -0.40 1.28 16 37 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 38 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.38 9.58 6.06 -40.82 -0.25 9.33 16 40 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 41 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 42 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 43 H 0.06 1.00 6.83 -51.93 -0.35 0.65 16 44 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 45 H 0.07 1.25 6.66 -51.93 -0.35 0.90 16 LS Contribution 359.30 15.07 5.41 5.41 Total: -1.00 -29.08 359.30 -9.93 -39.01 By element: Atomic # 1 Polarization: 16.30 SS G_CDS: -6.78 Total: 9.53 kcal Atomic # 6 Polarization: -6.90 SS G_CDS: -1.41 Total: -8.31 kcal Atomic # 7 Polarization: -53.68 SS G_CDS: 0.00 Total: -53.69 kcal Atomic # 8 Polarization: -9.21 SS G_CDS: 0.05 Total: -9.16 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Atomic # 16 Polarization: 2.68 SS G_CDS: -2.18 Total: 0.50 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -29.08 -9.93 -39.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044861210.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.894 kcal (2) G-P(sol) polarization free energy of solvation -29.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.009 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds