Wall clock time and date at job start Tue Mar 31 2020 13:14:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50701 * 109.47096 * 2 1 4 4 C 1.37472 * 123.35425 * 265.02835 * 3 2 1 5 5 C 1.33813 * 115.10430 * 179.97438 * 4 3 2 6 6 S 1.70618 * 110.95374 * 359.97438 * 5 4 3 7 7 C 1.36643 * 123.35241 * 84.73189 * 3 2 1 8 8 C 1.46590 * 125.45695 * 0.02562 * 7 3 2 9 9 O 1.21694 * 120.00240 * 309.33358 * 8 7 3 10 10 N 1.34776 * 119.99487 * 129.33056 * 8 7 3 11 11 C 1.46925 * 120.63746 * 4.60475 * 10 8 7 12 12 C 1.52762 * 109.00955 * 233.58621 * 11 10 8 13 13 C 1.53035 * 109.38247 * 305.58112 * 12 11 10 14 14 H 1.09002 * 109.45250 * 181.25387 * 13 12 11 15 15 N 1.46497 * 109.46329 * 301.22546 * 13 12 11 16 16 C 1.36940 * 119.99694 * 275.06493 * 15 13 12 17 17 H 1.08000 * 120.00106 * 0.02562 * 16 15 13 18 18 C 1.38812 * 120.00037 * 179.97438 * 16 15 13 19 19 N 1.31626 * 119.99967 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00028 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47255 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.46977 * 120.00814 * 20 18 16 23 23 H 1.48508 * 109.47242 * 240.00093 * 20 18 16 24 24 C 1.53047 * 109.53728 * 61.24238 * 13 12 11 25 25 C 1.46927 * 120.62907 * 184.88483 * 10 8 7 26 26 H 1.09002 * 109.58691 * 246.15791 * 25 10 8 27 27 C 1.53006 * 109.58573 * 6.58013 * 25 10 8 28 28 H 1.08991 * 109.47293 * 59.99914 * 1 2 3 29 29 H 1.08997 * 109.46916 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47000 * 299.99286 * 1 2 3 31 31 H 1.09002 * 109.47618 * 120.00430 * 2 1 3 32 32 H 1.09000 * 109.47236 * 240.00284 * 2 1 3 33 33 H 1.08002 * 122.44475 * 359.97438 * 4 3 2 34 34 H 1.08001 * 124.52440 * 179.97438 * 5 4 3 35 35 H 1.09006 * 109.57875 * 353.41854 * 11 10 8 36 36 H 1.08995 * 109.58990 * 113.83924 * 11 10 8 37 37 H 1.08997 * 109.56201 * 185.55157 * 12 11 10 38 38 H 1.08999 * 109.38780 * 65.51210 * 12 11 10 39 39 H 0.97001 * 120.00204 * 95.06420 * 15 13 12 40 40 H 0.96996 * 119.99815 * 179.97438 * 19 18 16 41 41 H 1.09000 * 109.50139 * 178.68403 * 24 13 12 42 42 H 1.09000 * 109.52151 * 58.60019 * 24 13 12 43 43 H 1.08997 * 109.47178 * 52.92919 * 27 25 10 44 44 H 1.09004 * 109.46787 * 172.92993 * 27 25 10 45 45 H 1.09002 * 109.46974 * 292.92707 * 27 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3781 2.1003 -1.1440 5 6 2.8033 3.3545 -0.9527 6 16 2.7912 3.7568 0.7053 7 6 2.1839 2.1640 1.1366 8 6 1.8895 1.7061 2.4976 9 8 0.8153 1.1917 2.7475 10 7 2.8085 1.8548 3.4721 11 6 4.0688 2.5634 3.2110 12 6 5.2371 1.6668 3.6169 13 6 5.0552 1.2223 5.0699 14 1 5.8995 0.6006 5.3678 15 7 4.9878 2.4017 5.9364 16 6 6.1408 2.9815 6.3944 17 1 7.0997 2.5696 6.1165 18 6 6.0770 4.0993 7.2150 19 7 4.9083 4.6016 7.5533 20 14 7.6497 4.8906 7.8392 21 1 8.8213 4.1413 7.3186 22 1 7.7150 6.2984 7.3711 23 1 7.6630 4.8617 9.3239 24 6 3.7592 0.4188 5.2009 25 6 2.5718 1.3061 4.8144 26 1 2.4766 2.1218 5.5311 27 6 1.2889 0.4723 4.8087 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5137 0.8901 31 1 1.8934 -0.5139 0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 2.3114 1.6543 -2.1253 34 1 3.1129 4.0230 -1.7425 35 1 4.1423 2.7987 2.1491 36 1 4.0982 3.4838 3.7942 37 1 6.1718 2.2190 3.5198 38 1 5.2631 0.7908 2.9689 39 1 4.1265 2.7718 6.1857 40 1 4.8638 5.3824 8.1270 41 1 3.6421 0.0827 6.2311 42 1 3.7982 -0.4458 4.5383 43 1 1.3399 -0.2674 4.0097 44 1 1.1812 -0.0352 5.7674 45 1 0.4318 1.1254 4.6450 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044861210.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:14:45 Heat of formation + Delta-G solvation = 2.486930 kcal Electronic energy + Delta-G solvation = -26266.021969 eV Core-core repulsion = 22796.080999 eV Total energy + Delta-G solvation = -3469.940970 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.67167 -39.54390 -38.44930 -35.86708 -34.12189 -33.75386 -33.56170 -30.98395 -30.08944 -28.35126 -26.34099 -25.74057 -25.19278 -23.54333 -23.23130 -21.95959 -20.33442 -19.24545 -19.12834 -18.66019 -17.15688 -17.09421 -16.69927 -16.23833 -16.08993 -15.65635 -15.52177 -15.01419 -14.93448 -14.69573 -14.45266 -14.27184 -14.23599 -13.88211 -13.54433 -13.33734 -13.09811 -13.01906 -12.89453 -12.81874 -12.64442 -12.50059 -12.32334 -12.05883 -12.02067 -11.98941 -11.81566 -11.63483 -11.60281 -11.39764 -10.91281 -10.24597 -9.72136 -9.50747 -9.31823 -8.95009 -7.89681 -5.17205 -0.30966 0.43727 1.00562 1.49308 1.50328 1.52105 1.59394 1.85550 2.12931 2.59356 3.43899 3.51735 3.86078 3.90049 3.92072 4.00638 4.06583 4.16277 4.28417 4.35435 4.35976 4.46637 4.51454 4.52952 4.62584 4.72540 4.80209 4.83937 4.91264 4.92107 5.04305 5.06347 5.10000 5.12404 5.21812 5.24419 5.32870 5.38652 5.40629 5.47291 5.53141 5.58489 5.70823 6.32091 6.42651 7.12247 7.39188 8.14360 8.38082 9.33850 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.017394 B = 0.004018 C = 0.003561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1609.321143 B = 6966.599559 C = 7861.537025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.062 4.062 3 C -0.034 4.034 4 C -0.147 4.147 5 C -0.229 4.229 6 S 0.196 5.804 7 C -0.292 4.292 8 C 0.586 3.414 9 O -0.544 6.544 10 N -0.592 5.592 11 C 0.113 3.887 12 C -0.138 4.138 13 C 0.167 3.833 14 H 0.052 0.948 15 N -0.730 5.730 16 C -0.230 4.230 17 H 0.077 0.923 18 C -0.073 4.073 19 N -0.970 5.970 20 Si 0.965 3.035 21 H -0.265 1.265 22 H -0.297 1.297 23 H -0.299 1.299 24 C -0.121 4.121 25 C 0.147 3.853 26 H 0.051 0.949 27 C -0.119 4.119 28 H 0.060 0.940 29 H 0.066 0.934 30 H 0.046 0.954 31 H 0.054 0.946 32 H 0.097 0.903 33 H 0.171 0.829 34 H 0.197 0.803 35 H 0.095 0.905 36 H 0.053 0.947 37 H 0.067 0.933 38 H 0.073 0.927 39 H 0.373 0.627 40 H 0.248 0.752 41 H 0.074 0.926 42 H 0.083 0.917 43 H 0.062 0.938 44 H 0.056 0.944 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.901 -7.883 -19.731 21.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.101 4.101 3 C -0.050 4.050 4 C -0.177 4.177 5 C -0.366 4.366 6 S 0.465 5.535 7 C -0.412 4.412 8 C 0.374 3.626 9 O -0.425 6.425 10 N -0.324 5.324 11 C -0.010 4.010 12 C -0.179 4.179 13 C 0.058 3.942 14 H 0.070 0.930 15 N -0.372 5.372 16 C -0.362 4.362 17 H 0.095 0.905 18 C -0.265 4.265 19 N -0.621 5.621 20 Si 0.796 3.204 21 H -0.190 1.190 22 H -0.225 1.225 23 H -0.227 1.227 24 C -0.160 4.160 25 C 0.044 3.956 26 H 0.069 0.931 27 C -0.177 4.177 28 H 0.079 0.921 29 H 0.085 0.915 30 H 0.065 0.935 31 H 0.073 0.927 32 H 0.116 0.884 33 H 0.188 0.812 34 H 0.214 0.786 35 H 0.112 0.888 36 H 0.071 0.929 37 H 0.086 0.914 38 H 0.092 0.908 39 H 0.206 0.794 40 H 0.057 0.943 41 H 0.092 0.908 42 H 0.101 0.899 43 H 0.081 0.919 44 H 0.075 0.925 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -4.859 -6.786 -18.745 20.519 hybrid contribution 0.208 -0.059 0.162 0.270 sum -4.651 -6.845 -18.583 20.342 Atomic orbital electron populations 1.21695 0.94011 1.02208 1.01998 1.20273 0.96724 0.90200 1.02945 1.19672 0.96867 0.97878 0.90534 1.20086 1.03542 0.94155 0.99921 1.25679 1.07358 1.01767 1.01770 1.83600 1.59078 1.11172 0.99660 1.24444 1.17959 1.01500 0.97273 1.17310 0.83554 0.78410 0.83333 1.90810 1.24171 1.45671 1.81818 1.48097 1.18427 1.55141 1.10754 1.21786 0.82676 0.95100 1.01468 1.22277 0.97492 0.99554 0.98537 1.20431 0.96042 0.88103 0.89610 0.93032 1.42670 1.05349 1.31812 1.57324 1.19644 0.87657 1.06939 1.21929 0.90471 1.25431 0.99048 1.00034 1.02026 1.69822 1.24218 1.25935 1.42110 0.85183 0.80118 0.77934 0.77192 1.18973 1.22476 1.22679 1.22130 0.93804 0.97936 1.02143 1.21182 0.96410 0.95784 0.82185 0.93092 1.22023 0.95304 0.99602 1.00729 0.92064 0.91473 0.93521 0.92688 0.88427 0.81208 0.78613 0.88770 0.92883 0.91416 0.90848 0.79422 0.94335 0.90770 0.89864 0.91926 0.92481 0.92420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.93 9.85 71.98 0.71 -2.22 16 2 C -0.06 -1.27 5.66 29.85 0.17 -1.10 16 3 C -0.03 -0.78 5.16 -20.42 -0.11 -0.89 16 4 C -0.15 -2.56 9.96 21.08 0.21 -2.35 16 5 C -0.23 -3.90 10.92 66.81 0.73 -3.17 16 6 S 0.20 4.57 20.27 -56.49 -1.15 3.42 16 7 C -0.29 -8.05 5.32 24.08 0.13 -7.92 16 8 C 0.59 19.21 6.74 86.42 0.58 19.79 16 9 O -0.54 -19.42 10.53 -4.33 -0.05 -19.47 16 10 N -0.59 -19.83 2.98 -800.62 -2.38 -22.21 16 11 C 0.11 3.76 5.68 86.22 0.49 4.25 16 12 C -0.14 -4.51 5.76 30.53 0.18 -4.33 16 13 C 0.17 6.20 3.10 45.02 0.14 6.34 16 14 H 0.05 1.93 8.08 -2.39 -0.02 1.91 16 15 N -0.73 -34.71 4.31 -322.81 -1.39 -36.11 16 16 C -0.23 -12.12 9.93 84.03 0.83 -11.29 16 17 H 0.08 3.91 7.83 -2.91 -0.02 3.88 16 18 C -0.07 -4.08 5.50 84.86 0.47 -3.62 16 19 N -0.97 -58.27 13.06 21.65 0.28 -57.99 16 20 Si 0.97 45.25 29.55 68.60 2.03 47.27 16 21 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 22 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 23 H -0.30 -14.24 7.11 99.48 0.71 -13.53 16 24 C -0.12 -3.93 5.07 30.67 0.16 -3.78 16 25 C 0.15 5.09 3.20 44.98 0.14 5.24 16 26 H 0.05 2.08 6.64 -2.39 -0.02 2.06 16 27 C -0.12 -3.79 7.61 71.98 0.55 -3.24 16 28 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.05 1.26 6.38 -2.38 -0.02 1.25 16 31 H 0.05 1.32 7.79 -2.39 -0.02 1.30 16 32 H 0.10 1.44 8.12 -2.39 -0.02 1.42 16 33 H 0.17 1.94 8.06 -2.91 -0.02 1.91 16 34 H 0.20 2.07 8.06 -2.91 -0.02 2.05 16 35 H 0.09 2.74 4.26 -12.37 -0.05 2.69 16 36 H 0.05 2.13 7.74 -2.39 -0.02 2.11 16 37 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 38 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 39 H 0.37 19.39 6.06 -92.71 -0.56 18.83 16 40 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 41 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 42 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 43 H 0.06 1.99 6.83 -2.39 -0.02 1.97 16 44 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 45 H 0.06 2.01 6.66 -2.39 -0.02 2.00 16 Total: -1.00 -64.16 359.30 3.11 -61.05 By element: Atomic # 1 Polarization: 31.93 SS G_CDS: 0.39 Total: 32.32 kcal Atomic # 6 Polarization: -13.67 SS G_CDS: 5.38 Total: -8.30 kcal Atomic # 7 Polarization: -112.81 SS G_CDS: -3.49 Total: -116.31 kcal Atomic # 8 Polarization: -19.42 SS G_CDS: -0.05 Total: -19.47 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.27 kcal Atomic # 16 Polarization: 4.57 SS G_CDS: -1.15 Total: 3.42 kcal Total: -64.16 3.11 -61.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044861210.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.534 kcal (2) G-P(sol) polarization free energy of solvation -64.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.047 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds