Wall clock time and date at job start Tue Mar 31 2020 13:14:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50701 * 109.46723 * 2 1 4 4 C 1.37476 * 123.34713 * 265.21685 * 3 2 1 5 5 C 1.33818 * 115.09772 * 180.29406 * 4 3 2 6 6 S 1.70617 * 110.95599 * 359.72967 * 5 4 3 7 7 C 1.36642 * 123.35757 * 84.99978 * 3 2 1 8 8 C 1.46585 * 125.45514 * 359.97438 * 7 3 2 9 9 O 1.21708 * 119.99982 * 48.78598 * 8 7 3 10 10 N 1.34775 * 119.99857 * 228.79221 * 8 7 3 11 11 C 1.46925 * 120.63335 * 354.94973 * 10 8 7 12 12 C 1.53193 * 108.77435 * 126.41683 * 11 10 8 13 13 C 1.53041 * 109.31374 * 54.63851 * 12 11 10 14 14 H 1.08996 * 109.46028 * 178.63030 * 13 12 11 15 15 N 1.46498 * 109.46110 * 58.65360 * 13 12 11 16 16 C 1.36935 * 119.99818 * 84.97295 * 15 13 12 17 17 H 1.07995 * 120.00443 * 359.97438 * 16 15 13 18 18 C 1.38810 * 119.99721 * 179.97438 * 16 15 13 19 19 N 1.31614 * 120.00275 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 120.00022 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.46982 * 0.02562 * 20 18 16 22 22 H 1.48497 * 109.47434 * 239.99979 * 20 18 16 23 23 H 1.48507 * 109.47076 * 120.00091 * 20 18 16 24 24 C 1.53046 * 109.52413 * 298.63942 * 13 12 11 25 25 C 1.46934 * 120.62770 * 174.97540 * 10 8 7 26 26 H 1.09001 * 109.58276 * 113.79691 * 25 10 8 27 27 C 1.52999 * 109.58800 * 353.37377 * 25 10 8 28 28 H 1.08999 * 109.47243 * 300.00219 * 1 2 3 29 29 H 1.09002 * 109.47093 * 60.00522 * 1 2 3 30 30 H 1.09003 * 109.46551 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47243 * 239.99781 * 2 1 3 32 32 H 1.09002 * 109.47093 * 119.99478 * 2 1 3 33 33 H 1.07997 * 122.45452 * 359.97438 * 4 3 2 34 34 H 1.08003 * 124.52247 * 179.74352 * 5 4 3 35 35 H 1.08998 * 109.58125 * 6.63077 * 11 10 8 36 36 H 1.09000 * 109.70610 * 246.27618 * 11 10 8 37 37 H 1.09005 * 109.49690 * 294.68446 * 12 11 10 38 38 H 1.09001 * 109.49563 * 174.59188 * 12 11 10 39 39 H 0.97002 * 119.99692 * 264.97318 * 15 13 12 40 40 H 0.96998 * 120.00010 * 359.97438 * 19 18 16 41 41 H 1.09002 * 109.49637 * 181.31085 * 24 13 12 42 42 H 1.08993 * 109.49849 * 301.40769 * 24 13 12 43 43 H 1.09001 * 109.46806 * 67.10778 * 27 25 10 44 44 H 1.08997 * 109.46785 * 187.10686 * 27 25 10 45 45 H 1.08993 * 109.46929 * 307.10286 * 27 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3744 2.1015 -1.1444 5 6 2.8065 3.3533 -0.9526 6 16 2.7996 3.7539 0.7059 7 6 2.1889 2.1624 1.1370 8 6 1.8995 1.7028 2.4985 9 8 2.3286 0.6307 2.8830 10 7 1.1581 2.4673 3.3245 11 6 0.7258 3.8105 2.9148 12 6 -0.7942 3.9101 3.0771 13 6 -1.1756 3.5373 4.5116 14 1 -2.2543 3.6309 4.6365 15 7 -0.4961 4.4372 5.4468 16 6 -1.0502 5.6512 5.7537 17 1 -1.9879 5.9455 5.3061 18 6 -0.4066 6.5036 6.6403 19 7 0.7365 6.1453 7.1855 20 14 -1.1620 8.1601 7.0585 21 1 -2.4390 8.3228 6.3183 22 1 -0.2236 9.2440 6.6718 23 1 -1.4244 8.2301 8.5185 24 6 -0.7529 2.0939 4.7946 25 6 0.7673 1.9736 4.6521 26 1 1.2550 2.5712 5.4222 27 6 1.1818 0.5080 4.7967 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0277 0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 2.3047 1.6566 -2.1260 34 1 3.1179 4.0212 -1.7422 35 1 0.9938 3.9781 1.8717 36 1 1.2101 4.5595 3.5414 37 1 -1.2799 3.2253 2.3818 38 1 -1.1162 4.9303 2.8684 39 1 0.3464 4.1730 5.8486 40 1 1.1290 5.2853 6.9681 41 1 -1.0456 1.8213 5.8086 42 1 -1.2390 1.4263 4.0833 43 1 2.2695 0.4375 4.8087 44 1 0.7815 0.1075 5.7281 45 1 0.7897 -0.0651 3.9566 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044861211.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:14:50 Heat of formation + Delta-G solvation = 18.336625 kcal Electronic energy + Delta-G solvation = -26422.241020 eV Core-core repulsion = 22952.987344 eV Total energy + Delta-G solvation = -3469.253676 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.47706 -38.53392 -37.24397 -34.42496 -32.95579 -32.79195 -32.06081 -29.40445 -28.68287 -26.99809 -25.48224 -24.06204 -23.43533 -22.48690 -22.31366 -20.78557 -19.16697 -18.24982 -17.62604 -17.23226 -16.02869 -15.94489 -15.44205 -15.14009 -14.74448 -14.25512 -14.12404 -13.86127 -13.73105 -13.54011 -13.32661 -13.20003 -12.99340 -12.87889 -12.34850 -12.16380 -12.03948 -11.89735 -11.63233 -11.54083 -11.27558 -11.09005 -10.85173 -10.82059 -10.69375 -10.53226 -10.33637 -10.21665 -10.04880 -9.20393 -9.08597 -8.97788 -8.75140 -8.39041 -8.24982 -7.07134 -6.12614 -3.13355 0.58072 1.36522 1.84368 2.38548 2.98235 3.28480 3.49771 3.55808 3.65064 4.60953 4.64205 4.68674 4.99063 5.06799 5.14382 5.20218 5.24679 5.30266 5.32648 5.41774 5.55650 5.57250 5.62402 5.64078 5.67954 5.77962 5.86228 5.90269 5.91716 6.02651 6.07270 6.10016 6.19335 6.28290 6.33409 6.34328 6.41775 6.51260 6.64793 6.66369 6.72991 6.96336 7.61715 7.79592 8.30229 8.72330 9.18746 10.05218 10.20482 11.35234 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.016495 B = 0.004145 C = 0.003716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1697.051637 B = 6753.672404 C = 7533.562713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.074 4.074 3 C -0.039 4.039 4 C -0.141 4.141 5 C -0.251 4.251 6 S 0.220 5.780 7 C -0.257 4.257 8 C 0.590 3.410 9 O -0.529 6.529 10 N -0.590 5.590 11 C 0.104 3.896 12 C -0.145 4.145 13 C 0.179 3.821 14 H 0.053 0.947 15 N -0.733 5.733 16 C -0.330 4.330 17 H 0.065 0.935 18 C -0.043 4.043 19 N -0.944 5.944 20 Si 1.083 2.917 21 H -0.295 1.295 22 H -0.294 1.294 23 H -0.294 1.294 24 C -0.134 4.134 25 C 0.148 3.852 26 H 0.076 0.924 27 C -0.135 4.135 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.058 0.942 31 H 0.072 0.928 32 H 0.089 0.911 33 H 0.140 0.860 34 H 0.166 0.834 35 H 0.076 0.924 36 H 0.084 0.916 37 H 0.050 0.950 38 H 0.075 0.925 39 H 0.366 0.634 40 H 0.254 0.746 41 H 0.075 0.925 42 H 0.062 0.938 43 H 0.074 0.926 44 H 0.043 0.957 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.428 -9.516 -16.627 19.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.113 4.113 3 C -0.054 4.054 4 C -0.173 4.173 5 C -0.388 4.388 6 S 0.489 5.511 7 C -0.377 4.377 8 C 0.376 3.624 9 O -0.408 6.408 10 N -0.322 5.322 11 C -0.019 4.019 12 C -0.187 4.187 13 C 0.069 3.931 14 H 0.070 0.930 15 N -0.377 5.377 16 C -0.461 4.461 17 H 0.083 0.917 18 C -0.241 4.241 19 N -0.589 5.589 20 Si 0.915 3.085 21 H -0.222 1.222 22 H -0.221 1.221 23 H -0.221 1.221 24 C -0.173 4.173 25 C 0.045 3.955 26 H 0.094 0.906 27 C -0.192 4.192 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.077 0.923 31 H 0.091 0.909 32 H 0.107 0.893 33 H 0.158 0.842 34 H 0.183 0.817 35 H 0.093 0.907 36 H 0.102 0.898 37 H 0.068 0.932 38 H 0.093 0.907 39 H 0.201 0.799 40 H 0.066 0.934 41 H 0.093 0.907 42 H 0.081 0.919 43 H 0.092 0.908 44 H 0.062 0.938 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 2.041 -7.242 -14.779 16.584 hybrid contribution -0.376 -2.359 -1.907 3.056 sum 1.664 -9.601 -16.686 19.323 Atomic orbital electron populations 1.21694 0.94560 1.01731 1.02020 1.20375 0.96096 0.91076 1.03769 1.19314 0.98464 0.97125 0.90475 1.19822 1.03896 0.94211 0.99375 1.25340 1.09166 1.01549 1.02728 1.83500 1.59222 1.10589 0.97772 1.24553 1.15711 0.99477 0.97988 1.17004 0.78511 0.84098 0.82764 1.90837 1.52640 1.22671 1.74679 1.48098 1.51024 1.16857 1.16220 1.22030 0.96905 0.82784 1.00201 1.22470 0.94273 1.01919 1.00005 1.20129 0.96277 0.88136 0.88567 0.92951 1.42520 1.25521 1.17824 1.51819 1.20090 1.06086 0.94736 1.25227 0.91687 1.25710 0.97453 1.04142 0.96810 1.70828 1.18746 1.23238 1.46096 0.83175 0.74323 0.75092 0.75952 1.22165 1.22079 1.22086 1.22262 0.94668 0.98276 1.02116 1.21256 0.95352 0.96011 0.82856 0.90572 1.22195 1.02925 0.93719 1.00403 0.92664 0.92732 0.92263 0.90931 0.89266 0.84237 0.81681 0.90657 0.89802 0.93179 0.90668 0.79930 0.93428 0.90672 0.91889 0.90757 0.93786 0.91795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.50 9.89 37.16 0.37 -1.13 16 2 C -0.07 -0.83 5.94 -27.88 -0.17 -1.00 16 3 C -0.04 -0.49 5.16 -105.48 -0.54 -1.04 16 4 C -0.14 -1.49 9.96 -41.41 -0.41 -1.91 16 5 C -0.25 -2.55 10.92 29.18 0.32 -2.23 16 6 S 0.22 2.69 20.13 -107.50 -2.16 0.52 16 7 C -0.26 -3.67 5.38 -36.79 -0.20 -3.87 16 8 C 0.59 9.66 7.00 -12.90 -0.09 9.57 16 9 O -0.53 -9.46 11.21 5.18 0.06 -9.40 16 10 N -0.59 -9.72 2.97 -166.80 -0.50 -10.21 16 11 C 0.10 1.72 5.70 -3.71 -0.02 1.70 16 12 C -0.15 -2.47 5.78 -26.61 -0.15 -2.62 16 13 C 0.18 3.40 3.10 -67.89 -0.21 3.19 16 14 H 0.05 1.03 8.08 -51.93 -0.42 0.61 16 15 N -0.73 -17.14 4.31 -53.39 -0.23 -17.37 16 16 C -0.33 -8.80 9.93 -15.06 -0.15 -8.95 16 17 H 0.07 1.72 7.83 -52.49 -0.41 1.31 16 18 C -0.04 -1.22 5.50 -17.43 -0.10 -1.31 16 19 N -0.94 -28.35 13.70 55.49 0.76 -27.59 16 20 Si 1.08 25.39 29.92 -169.99 -5.09 20.30 16 21 H -0.30 -6.50 7.11 56.52 0.40 -6.10 16 22 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 23 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 24 C -0.13 -2.21 5.07 -26.62 -0.13 -2.35 16 25 C 0.15 2.48 3.19 -67.61 -0.22 2.27 16 26 H 0.08 1.43 6.64 -51.93 -0.34 1.08 16 27 C -0.14 -2.12 7.61 37.16 0.28 -1.84 16 28 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.07 0.67 8.12 -51.93 -0.42 0.25 16 32 H 0.09 1.18 6.64 -51.93 -0.34 0.84 16 33 H 0.14 1.14 8.06 -52.49 -0.42 0.72 16 34 H 0.17 1.24 8.06 -52.48 -0.42 0.82 16 35 H 0.08 1.11 4.14 -33.50 -0.14 0.97 16 36 H 0.08 1.61 7.74 -51.93 -0.40 1.21 16 37 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 39 H 0.37 8.94 4.90 -40.82 -0.20 8.74 16 40 H 0.25 7.55 6.77 -40.82 -0.28 7.27 16 41 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 42 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 43 H 0.07 1.26 6.65 -51.93 -0.35 0.91 16 44 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.06 1.02 6.84 -51.93 -0.36 0.67 16 LS Contribution 359.28 15.07 5.41 5.41 Total: -1.00 -30.37 359.28 -9.85 -40.22 By element: Atomic # 1 Polarization: 16.32 SS G_CDS: -6.68 Total: 9.63 kcal Atomic # 6 Polarization: -10.10 SS G_CDS: -1.42 Total: -11.52 kcal Atomic # 7 Polarization: -55.21 SS G_CDS: 0.03 Total: -55.17 kcal Atomic # 8 Polarization: -9.46 SS G_CDS: 0.06 Total: -9.40 kcal Atomic # 14 Polarization: 25.39 SS G_CDS: -5.09 Total: 20.30 kcal Atomic # 16 Polarization: 2.69 SS G_CDS: -2.16 Total: 0.52 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -30.37 -9.85 -40.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044861211.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.559 kcal (2) G-P(sol) polarization free energy of solvation -30.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.223 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds