Wall clock time and date at job start Tue Mar 31 2020 13:14:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50701 * 109.46723 * 2 1 4 4 C 1.37476 * 123.34713 * 265.21685 * 3 2 1 5 5 C 1.33818 * 115.09772 * 180.29406 * 4 3 2 6 6 S 1.70617 * 110.95599 * 359.72967 * 5 4 3 7 7 C 1.36642 * 123.35757 * 84.99978 * 3 2 1 8 8 C 1.46585 * 125.45514 * 359.97438 * 7 3 2 9 9 O 1.21708 * 119.99982 * 48.78598 * 8 7 3 10 10 N 1.34775 * 119.99857 * 228.79221 * 8 7 3 11 11 C 1.46925 * 120.63335 * 354.94973 * 10 8 7 12 12 C 1.53193 * 108.77435 * 126.41683 * 11 10 8 13 13 C 1.53041 * 109.31374 * 54.63851 * 12 11 10 14 14 H 1.08996 * 109.46028 * 178.63030 * 13 12 11 15 15 N 1.46498 * 109.46110 * 58.65360 * 13 12 11 16 16 C 1.36935 * 119.99818 * 84.97295 * 15 13 12 17 17 H 1.07995 * 120.00443 * 359.97438 * 16 15 13 18 18 C 1.38810 * 119.99721 * 179.97438 * 16 15 13 19 19 N 1.31614 * 120.00275 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 120.00022 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.46982 * 0.02562 * 20 18 16 22 22 H 1.48497 * 109.47434 * 239.99979 * 20 18 16 23 23 H 1.48507 * 109.47076 * 120.00091 * 20 18 16 24 24 C 1.53046 * 109.52413 * 298.63942 * 13 12 11 25 25 C 1.46934 * 120.62770 * 174.97540 * 10 8 7 26 26 H 1.09001 * 109.58276 * 113.79691 * 25 10 8 27 27 C 1.52999 * 109.58800 * 353.37377 * 25 10 8 28 28 H 1.08999 * 109.47243 * 300.00219 * 1 2 3 29 29 H 1.09002 * 109.47093 * 60.00522 * 1 2 3 30 30 H 1.09003 * 109.46551 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47243 * 239.99781 * 2 1 3 32 32 H 1.09002 * 109.47093 * 119.99478 * 2 1 3 33 33 H 1.07997 * 122.45452 * 359.97438 * 4 3 2 34 34 H 1.08003 * 124.52247 * 179.74352 * 5 4 3 35 35 H 1.08998 * 109.58125 * 6.63077 * 11 10 8 36 36 H 1.09000 * 109.70610 * 246.27618 * 11 10 8 37 37 H 1.09005 * 109.49690 * 294.68446 * 12 11 10 38 38 H 1.09001 * 109.49563 * 174.59188 * 12 11 10 39 39 H 0.97002 * 119.99692 * 264.97318 * 15 13 12 40 40 H 0.96998 * 120.00010 * 359.97438 * 19 18 16 41 41 H 1.09002 * 109.49637 * 181.31085 * 24 13 12 42 42 H 1.08993 * 109.49849 * 301.40769 * 24 13 12 43 43 H 1.09001 * 109.46806 * 67.10778 * 27 25 10 44 44 H 1.08997 * 109.46785 * 187.10686 * 27 25 10 45 45 H 1.08993 * 109.46929 * 307.10286 * 27 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3744 2.1015 -1.1444 5 6 2.8065 3.3533 -0.9526 6 16 2.7996 3.7539 0.7059 7 6 2.1889 2.1624 1.1370 8 6 1.8995 1.7028 2.4985 9 8 2.3286 0.6307 2.8830 10 7 1.1581 2.4673 3.3245 11 6 0.7258 3.8105 2.9148 12 6 -0.7942 3.9101 3.0771 13 6 -1.1756 3.5373 4.5116 14 1 -2.2543 3.6309 4.6365 15 7 -0.4961 4.4372 5.4468 16 6 -1.0502 5.6512 5.7537 17 1 -1.9879 5.9455 5.3061 18 6 -0.4066 6.5036 6.6403 19 7 0.7365 6.1453 7.1855 20 14 -1.1620 8.1601 7.0585 21 1 -2.4390 8.3228 6.3183 22 1 -0.2236 9.2440 6.6718 23 1 -1.4244 8.2301 8.5185 24 6 -0.7529 2.0939 4.7946 25 6 0.7673 1.9736 4.6521 26 1 1.2550 2.5712 5.4222 27 6 1.1818 0.5080 4.7967 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0277 0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 2.3047 1.6566 -2.1260 34 1 3.1179 4.0212 -1.7422 35 1 0.9938 3.9781 1.8717 36 1 1.2101 4.5595 3.5414 37 1 -1.2799 3.2253 2.3818 38 1 -1.1162 4.9303 2.8684 39 1 0.3464 4.1730 5.8486 40 1 1.1290 5.2853 6.9681 41 1 -1.0456 1.8213 5.8086 42 1 -1.2390 1.4263 4.0833 43 1 2.2695 0.4375 4.8087 44 1 0.7815 0.1075 5.7281 45 1 0.7897 -0.0651 3.9566 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044861211.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:14:49 Heat of formation + Delta-G solvation = 1.870195 kcal Electronic energy + Delta-G solvation = -26422.955058 eV Core-core repulsion = 22952.987344 eV Total energy + Delta-G solvation = -3469.967714 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.76933 -39.61993 -38.56096 -36.15363 -34.23688 -33.84045 -33.66633 -30.81477 -30.08578 -28.38925 -26.46024 -25.58743 -25.33231 -23.59088 -23.30516 -22.08122 -20.57453 -19.38352 -19.16603 -18.74948 -17.26248 -17.19755 -16.85775 -16.32250 -16.20479 -15.83087 -15.47501 -15.05963 -15.04325 -14.76374 -14.62285 -14.40260 -14.35053 -13.92760 -13.52877 -13.43594 -13.26761 -13.11888 -12.98092 -12.68924 -12.64989 -12.41582 -12.26424 -12.11252 -12.02978 -11.85608 -11.82576 -11.68663 -11.66420 -11.17363 -10.92110 -10.34039 -9.78662 -9.60365 -9.36040 -9.06399 -8.33094 -5.27125 -0.36921 0.38967 0.95519 1.46735 1.60352 1.70923 1.77559 1.82120 2.04809 2.73656 3.42961 3.45457 3.69441 3.80928 3.86726 3.88286 3.94566 4.11740 4.16505 4.22580 4.30936 4.35760 4.42308 4.47625 4.52034 4.60677 4.74220 4.74860 4.81127 4.86491 4.93169 4.98150 5.03543 5.07162 5.12730 5.14463 5.20031 5.27632 5.30210 5.44266 5.46219 5.59906 5.67497 6.32604 6.53724 7.02668 7.13405 8.04159 8.16574 9.18204 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.016495 B = 0.004145 C = 0.003716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1697.051637 B = 6753.672404 C = 7533.562713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.075 4.075 3 C -0.030 4.030 4 C -0.147 4.147 5 C -0.227 4.227 6 S 0.196 5.804 7 C -0.297 4.297 8 C 0.589 3.411 9 O -0.550 6.550 10 N -0.592 5.592 11 C 0.113 3.887 12 C -0.136 4.136 13 C 0.172 3.828 14 H 0.049 0.951 15 N -0.742 5.742 16 C -0.319 4.319 17 H 0.068 0.932 18 C -0.104 4.104 19 N -0.978 5.978 20 Si 1.128 2.872 21 H -0.271 1.271 22 H -0.294 1.294 23 H -0.296 1.296 24 C -0.122 4.122 25 C 0.147 3.853 26 H 0.049 0.951 27 C -0.120 4.120 28 H 0.032 0.968 29 H 0.067 0.933 30 H 0.072 0.928 31 H 0.099 0.901 32 H 0.064 0.936 33 H 0.172 0.828 34 H 0.198 0.802 35 H 0.097 0.903 36 H 0.050 0.950 37 H 0.074 0.926 38 H 0.065 0.935 39 H 0.359 0.641 40 H 0.242 0.758 41 H 0.073 0.927 42 H 0.084 0.916 43 H 0.058 0.942 44 H 0.058 0.942 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.460 -9.932 -19.658 22.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.114 4.114 3 C -0.045 4.045 4 C -0.177 4.177 5 C -0.364 4.364 6 S 0.465 5.535 7 C -0.417 4.417 8 C 0.378 3.622 9 O -0.431 6.431 10 N -0.324 5.324 11 C -0.010 4.010 12 C -0.177 4.177 13 C 0.064 3.936 14 H 0.067 0.933 15 N -0.385 5.385 16 C -0.451 4.451 17 H 0.086 0.914 18 C -0.295 4.295 19 N -0.627 5.627 20 Si 0.954 3.046 21 H -0.196 1.196 22 H -0.221 1.221 23 H -0.223 1.223 24 C -0.161 4.161 25 C 0.044 3.956 26 H 0.067 0.933 27 C -0.177 4.177 28 H 0.051 0.949 29 H 0.086 0.914 30 H 0.091 0.909 31 H 0.117 0.883 32 H 0.083 0.917 33 H 0.189 0.811 34 H 0.215 0.785 35 H 0.115 0.885 36 H 0.068 0.932 37 H 0.093 0.907 38 H 0.084 0.916 39 H 0.192 0.808 40 H 0.052 0.948 41 H 0.092 0.908 42 H 0.103 0.897 43 H 0.077 0.923 44 H 0.077 0.923 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 1.043 -7.690 -17.853 19.466 hybrid contribution -0.058 -2.318 -1.094 2.564 sum 0.984 -10.008 -18.946 21.450 Atomic orbital electron populations 1.21654 0.93821 1.02506 1.01506 1.20424 0.96671 0.90464 1.03847 1.19683 0.96811 0.97441 0.90602 1.20110 1.03483 0.94185 0.99965 1.25713 1.07117 1.01812 1.01723 1.83592 1.59857 1.09994 1.00072 1.24399 1.18979 1.01058 0.97246 1.17306 0.77647 0.83685 0.83569 1.90816 1.53252 1.23610 1.75457 1.48089 1.51377 1.16833 1.16128 1.21881 0.96256 0.82107 1.00767 1.22328 0.94644 1.01889 0.98826 1.20356 0.95625 0.88814 0.88821 0.93313 1.42670 1.25422 1.17723 1.52681 1.20396 1.05562 0.95486 1.23660 0.91421 1.26998 0.97528 1.07398 0.97549 1.70942 1.20454 1.23113 1.48196 0.82589 0.74602 0.71619 0.75748 1.19553 1.22136 1.22339 1.22137 0.94360 0.96894 1.02668 1.21175 0.95420 0.96243 0.82714 0.93316 1.22025 1.01845 0.92807 1.01059 0.94920 0.91357 0.90929 0.88305 0.91690 0.81068 0.78481 0.88523 0.93161 0.90705 0.91618 0.80825 0.94798 0.90804 0.89709 0.92343 0.92312 0.91877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.56 9.89 71.98 0.71 -1.85 16 2 C -0.07 -1.53 5.94 29.85 0.18 -1.35 16 3 C -0.03 -0.68 5.16 -20.42 -0.11 -0.79 16 4 C -0.15 -2.55 9.96 21.08 0.21 -2.34 16 5 C -0.23 -3.83 10.92 66.81 0.73 -3.10 16 6 S 0.20 4.57 20.13 -56.49 -1.14 3.43 16 7 C -0.30 -8.24 5.38 24.08 0.13 -8.11 16 8 C 0.59 19.50 7.00 86.42 0.61 20.10 16 9 O -0.55 -20.09 11.21 -4.37 -0.05 -20.14 16 10 N -0.59 -19.87 2.97 -799.84 -2.38 -22.25 16 11 C 0.11 3.79 5.70 86.36 0.49 4.29 16 12 C -0.14 -4.54 5.78 30.67 0.18 -4.36 16 13 C 0.17 6.53 3.10 45.02 0.14 6.67 16 14 H 0.05 1.89 8.08 -2.39 -0.02 1.87 16 15 N -0.74 -35.53 4.31 -322.82 -1.39 -36.92 16 16 C -0.32 -17.19 9.93 84.03 0.83 -16.36 16 17 H 0.07 3.55 7.83 -2.91 -0.02 3.53 16 18 C -0.10 -5.87 5.50 84.86 0.47 -5.41 16 19 N -0.98 -60.59 13.70 21.65 0.30 -60.29 16 20 Si 1.13 51.43 29.92 68.60 2.05 53.48 16 21 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 22 H -0.29 -13.33 7.11 99.48 0.71 -12.63 16 23 H -0.30 -13.52 7.11 99.48 0.71 -12.81 16 24 C -0.12 -3.98 5.07 30.66 0.16 -3.82 16 25 C 0.15 5.08 3.19 44.96 0.14 5.23 16 26 H 0.05 1.95 6.64 -2.39 -0.02 1.93 16 27 C -0.12 -3.82 7.61 71.98 0.55 -3.27 16 28 H 0.03 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.10 1.49 8.12 -2.39 -0.02 1.47 16 32 H 0.06 1.67 6.64 -2.39 -0.02 1.66 16 33 H 0.17 1.91 8.06 -2.91 -0.02 1.88 16 34 H 0.20 2.04 8.06 -2.91 -0.02 2.01 16 35 H 0.10 2.83 4.14 -14.11 -0.06 2.77 16 36 H 0.05 2.02 7.74 -2.39 -0.02 2.00 16 37 H 0.07 2.14 8.14 -2.38 -0.02 2.12 16 38 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 39 H 0.36 18.34 4.90 -92.71 -0.45 17.89 16 40 H 0.24 15.03 6.77 -92.71 -0.63 14.40 16 41 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 42 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 43 H 0.06 2.04 6.65 -2.39 -0.02 2.02 16 44 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 45 H 0.06 2.01 6.84 -2.39 -0.02 2.00 16 Total: -1.00 -67.22 359.28 3.44 -63.78 By element: Atomic # 1 Polarization: 32.75 SS G_CDS: 0.63 Total: 33.39 kcal Atomic # 6 Polarization: -19.89 SS G_CDS: 5.42 Total: -14.47 kcal Atomic # 7 Polarization: -116.00 SS G_CDS: -3.47 Total: -119.47 kcal Atomic # 8 Polarization: -20.09 SS G_CDS: -0.05 Total: -20.14 kcal Atomic # 14 Polarization: 51.43 SS G_CDS: 2.05 Total: 53.48 kcal Atomic # 16 Polarization: 4.57 SS G_CDS: -1.14 Total: 3.43 kcal Total: -67.22 3.44 -63.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044861211.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.649 kcal (2) G-P(sol) polarization free energy of solvation -67.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.779 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds