Wall clock time and date at job start Tue Mar 31 2020 13:06:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.50700 * 109.46621 * 2 1 4 4 C 1.33816 * 124.52369 * 90.00511 * 3 2 1 5 5 C 1.37468 * 115.10307 * 179.97438 * 4 3 2 6 6 C 1.36652 * 113.29809 * 359.97438 * 5 4 3 7 7 C 1.46576 * 125.45967 * 180.02562 * 6 5 4 8 8 O 1.21697 * 120.00242 * 359.97438 * 7 6 5 9 9 N 1.34781 * 120.00332 * 180.02562 * 7 6 5 10 10 C 1.46490 * 120.00345 * 179.97438 * 9 7 6 11 11 C 1.53005 * 109.46192 * 59.99939 * 10 9 7 12 12 C 1.53041 * 109.46058 * 300.02470 * 10 9 7 13 13 C 1.53162 * 109.33013 * 301.35917 * 12 10 9 14 14 N 1.46921 * 108.76499 * 305.35631 * 13 12 10 15 15 C 1.36944 * 120.63051 * 233.62547 * 14 13 12 16 16 H 1.07994 * 119.99926 * 151.80800 * 15 14 13 17 17 C 1.38810 * 119.99630 * 331.81886 * 15 14 13 18 18 N 1.31615 * 120.00174 * 343.06922 * 17 15 14 19 19 Si 1.86801 * 119.99868 * 163.07600 * 17 15 14 20 20 H 1.48504 * 109.46972 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.47367 * 119.99479 * 19 17 15 22 22 H 1.48499 * 109.47332 * 239.99462 * 19 17 15 23 23 C 1.46928 * 118.74154 * 53.60825 * 14 13 12 24 24 C 1.53043 * 109.46109 * 179.97438 * 10 9 7 25 25 S 1.70620 * 124.52254 * 269.69860 * 3 2 1 26 26 H 1.08996 * 109.46879 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47244 * 300.00093 * 1 2 3 28 28 H 1.09000 * 109.47197 * 60.00486 * 1 2 3 29 29 H 1.08997 * 109.46741 * 119.99750 * 2 1 3 30 30 H 1.08997 * 109.47116 * 240.00440 * 2 1 3 31 31 H 1.07999 * 122.45007 * 359.96992 * 4 3 2 32 32 H 1.08001 * 123.35242 * 179.97438 * 5 4 3 33 33 H 0.97006 * 119.99453 * 359.97438 * 9 7 6 34 34 H 1.09001 * 109.47184 * 59.99769 * 11 10 9 35 35 H 1.09001 * 109.47335 * 179.97438 * 11 10 9 36 36 H 1.08995 * 109.46789 * 299.99973 * 11 10 9 37 37 H 1.09003 * 109.49508 * 61.29716 * 12 10 9 38 38 H 1.09003 * 109.49615 * 181.39216 * 12 10 9 39 39 H 1.08996 * 109.59195 * 185.57016 * 13 12 10 40 40 H 1.09002 * 109.70268 * 65.20584 * 13 12 10 41 41 H 0.97005 * 119.99826 * 180.02562 * 18 17 15 42 42 H 1.09005 * 109.58686 * 186.60226 * 23 14 13 43 43 H 1.08999 * 109.70274 * 66.24792 * 23 14 13 44 44 H 1.09000 * 109.49773 * 178.60969 * 24 10 9 45 45 H 1.09004 * 109.49945 * 298.66900 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2851 2.1359 1.1025 5 6 2.7376 3.4143 0.8775 6 6 2.8476 3.7230 -0.4491 7 6 3.3030 5.0077 -0.9883 8 8 3.6207 5.9068 -0.2321 9 7 3.3691 5.1937 -2.3216 10 6 3.8237 6.4778 -2.8604 11 6 5.2481 6.7579 -2.3770 12 6 2.8927 7.5920 -2.3767 13 6 1.4619 7.2909 -2.8328 14 7 1.4615 7.0941 -4.2888 15 6 0.6166 7.8149 -5.0900 16 1 0.8924 8.0277 -6.1122 17 6 -0.5942 8.2720 -4.5882 18 7 -1.0872 7.7522 -3.4841 19 14 -1.5238 9.6247 -5.4800 20 1 -0.7626 10.0357 -6.6870 21 1 -2.8608 9.1218 -5.8861 22 1 -1.6876 10.7916 -4.5762 23 6 2.3851 6.1096 -4.8689 24 6 3.8056 6.4241 -4.3898 25 16 2.3615 2.3301 -1.4057 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.8934 -0.5137 -0.8900 31 1 2.1440 1.7377 2.0964 32 1 2.9817 4.1059 1.6703 33 1 3.1156 4.4772 -2.9243 34 1 5.9112 5.9642 -2.7210 35 1 5.5867 7.7132 -2.7782 36 1 5.2612 6.7958 -1.2878 37 1 2.9237 7.6452 -1.2885 38 1 3.2159 8.5443 -2.7973 39 1 0.8129 8.1283 -2.5771 40 1 1.1024 6.3866 -2.3418 41 1 -1.9336 8.0715 -3.1336 42 1 2.3451 6.1677 -5.9567 43 1 2.1040 5.1072 -4.5460 44 1 4.1202 7.3874 -4.7914 45 1 4.4869 5.6463 -4.7346 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001045494687.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:06:46 Heat of formation + Delta-G solvation = 7.344198 kcal Electronic energy + Delta-G solvation = -25776.721944 eV Core-core repulsion = 22306.991601 eV Total energy + Delta-G solvation = -3469.730343 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.07434 -38.25134 -37.07601 -34.38745 -33.85297 -32.02822 -30.92641 -29.87637 -28.57247 -27.40954 -25.32575 -24.06138 -22.57415 -22.26564 -21.91966 -20.68051 -19.16943 -18.68872 -17.75557 -16.83551 -16.06141 -15.28250 -14.94151 -14.73261 -14.59295 -14.36156 -14.00793 -13.87700 -13.41898 -13.36560 -13.25388 -13.03606 -12.91465 -12.44077 -12.31074 -12.06139 -11.78786 -11.65603 -11.58968 -11.37076 -11.29572 -11.11053 -10.93097 -10.84783 -10.71673 -10.35246 -10.22206 -9.95750 -9.77811 -9.54669 -9.15485 -8.74159 -8.58858 -8.49440 -8.43486 -6.63721 -5.75739 -3.19126 0.56047 1.46852 1.89511 2.43862 3.38508 3.42222 3.46463 3.48317 3.55420 4.49692 4.51367 4.79983 4.96739 5.03777 5.21252 5.30738 5.36776 5.38323 5.44659 5.51910 5.54626 5.59082 5.62047 5.72461 5.95829 5.97883 5.99252 6.02676 6.13830 6.16496 6.22806 6.36306 6.38142 6.47619 6.54488 6.67486 6.75710 6.83033 6.94443 7.09829 7.44508 7.73982 7.82210 7.87317 8.47708 8.52320 9.23944 9.87397 10.44255 11.32139 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.013362 B = 0.004034 C = 0.003474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2094.970603 B = 6939.799769 C = 8059.057127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.053 4.053 3 C -0.199 4.199 4 C -0.153 4.153 5 C -0.060 4.060 6 C -0.256 4.256 7 C 0.592 3.408 8 O -0.529 6.529 9 N -0.705 5.705 10 C 0.184 3.816 11 C -0.160 4.160 12 C -0.151 4.151 13 C 0.177 3.823 14 N -0.590 5.590 15 C -0.254 4.254 16 H 0.065 0.935 17 C 0.004 3.996 18 N -0.900 5.900 19 Si 0.900 3.100 20 H -0.278 1.278 21 H -0.291 1.291 22 H -0.289 1.289 23 C 0.145 3.855 24 C -0.138 4.138 25 S 0.202 5.798 26 H 0.061 0.939 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.081 0.919 30 H 0.074 0.926 31 H 0.141 0.859 32 H 0.151 0.849 33 H 0.394 0.606 34 H 0.046 0.954 35 H 0.060 0.940 36 H 0.074 0.926 37 H 0.072 0.928 38 H 0.061 0.939 39 H 0.084 0.916 40 H 0.016 0.984 41 H 0.253 0.747 42 H 0.056 0.944 43 H 0.012 0.988 44 H 0.076 0.924 45 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.026 -14.640 6.012 18.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.092 4.092 3 C -0.319 4.319 4 C -0.184 4.184 5 C -0.093 4.093 6 C -0.377 4.377 7 C 0.378 3.622 8 O -0.408 6.408 9 N -0.356 5.356 10 C 0.100 3.900 11 C -0.219 4.219 12 C -0.191 4.191 13 C 0.052 3.948 14 N -0.313 5.313 15 C -0.383 4.383 16 H 0.083 0.917 17 C -0.195 4.195 18 N -0.544 5.544 19 Si 0.730 3.270 20 H -0.203 1.203 21 H -0.218 1.218 22 H -0.216 1.216 23 C 0.018 3.982 24 C -0.177 4.177 25 S 0.471 5.529 26 H 0.080 0.920 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.100 0.900 30 H 0.093 0.907 31 H 0.158 0.842 32 H 0.169 0.831 33 H 0.228 0.772 34 H 0.065 0.935 35 H 0.079 0.921 36 H 0.093 0.907 37 H 0.090 0.910 38 H 0.079 0.921 39 H 0.102 0.898 40 H 0.034 0.966 41 H 0.063 0.937 42 H 0.075 0.925 43 H 0.030 0.970 44 H 0.095 0.905 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 8.998 -14.222 5.018 17.562 hybrid contribution -0.698 0.587 0.928 1.301 sum 8.300 -13.636 5.946 17.035 Atomic orbital electron populations 1.21816 0.94027 1.02032 1.02933 1.20126 0.96434 0.89448 1.03234 1.24235 1.07630 1.02086 0.97963 1.19904 1.04857 0.94233 0.99370 1.20698 0.97222 0.96117 0.95233 1.24750 1.15402 0.99512 0.97995 1.16848 0.77537 0.85287 0.82531 1.90740 1.49564 1.42274 1.58254 1.45985 1.67238 1.16571 1.05763 1.20312 0.93451 0.82926 0.93352 1.22233 0.95375 1.00951 1.03302 1.22585 0.98800 0.96471 1.01255 1.20680 0.91004 1.00210 0.82929 1.44065 1.42052 1.42438 1.02750 1.19208 0.96443 1.26847 0.95839 0.91702 1.25042 0.96052 1.00315 0.98104 1.70053 1.19298 1.41850 1.23225 0.86260 0.79555 0.82079 0.79085 1.20263 1.21784 1.21578 1.20860 0.88329 0.91971 0.97018 1.22346 0.99912 1.02165 0.93323 1.83049 1.59747 1.02514 1.07624 0.91995 0.92137 0.92122 0.90012 0.90744 0.84168 0.83125 0.77156 0.93455 0.92100 0.90736 0.90992 0.92072 0.89776 0.96592 0.93726 0.92535 0.97016 0.90511 0.92605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.90 37.16 0.37 -0.85 16 2 C -0.05 -0.43 6.37 -27.88 -0.18 -0.61 16 3 C -0.20 -2.18 5.53 -35.86 -0.20 -2.38 16 4 C -0.15 -1.73 9.99 -41.41 -0.41 -2.14 16 5 C -0.06 -0.81 10.01 -40.44 -0.40 -1.22 16 6 C -0.26 -3.88 6.45 -36.79 -0.24 -4.11 16 7 C 0.59 10.46 7.20 -12.90 -0.09 10.36 16 8 O -0.53 -10.61 13.05 5.19 0.07 -10.54 16 9 N -0.71 -11.86 4.10 -48.89 -0.20 -12.06 16 10 C 0.18 3.22 0.66 -131.78 -0.09 3.14 16 11 C -0.16 -2.49 8.40 37.16 0.31 -2.18 16 12 C -0.15 -3.15 4.66 -26.63 -0.12 -3.27 16 13 C 0.18 4.39 5.04 -3.73 -0.02 4.37 16 14 N -0.59 -14.68 2.99 -172.35 -0.52 -15.19 16 15 C -0.25 -6.95 9.58 -15.06 -0.14 -7.10 16 16 H 0.07 1.74 7.88 -52.49 -0.41 1.33 16 17 C 0.00 0.10 4.92 -17.43 -0.09 0.02 16 18 N -0.90 -26.52 11.20 55.49 0.62 -25.90 16 19 Si 0.90 21.85 29.59 -169.99 -5.03 16.82 16 20 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 21 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 22 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 23 C 0.15 2.92 6.24 -3.72 -0.02 2.90 16 24 C -0.14 -2.30 4.96 -26.62 -0.13 -2.44 16 25 S 0.20 2.49 22.10 -107.50 -2.38 0.12 16 26 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.14 1.25 8.06 -52.49 -0.42 0.83 16 32 H 0.15 1.97 8.06 -52.49 -0.42 1.55 16 33 H 0.39 6.10 6.38 -40.82 -0.26 5.84 16 34 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.07 1.28 6.16 -51.93 -0.32 0.96 16 37 H 0.07 1.56 6.20 -51.93 -0.32 1.24 16 38 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 39 H 0.08 2.37 6.06 -51.93 -0.31 2.06 16 40 H 0.02 0.42 7.74 -51.93 -0.40 0.02 16 41 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 42 H 0.06 1.11 7.93 -51.93 -0.41 0.70 16 43 H 0.01 0.24 6.94 -51.93 -0.36 -0.12 16 44 H 0.08 1.31 8.14 -51.93 -0.42 0.88 16 45 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 365.41 15.07 5.51 5.51 Total: -1.00 -31.41 365.41 -10.40 -41.81 By element: Atomic # 1 Polarization: 11.97 SS G_CDS: -7.01 Total: 4.96 kcal Atomic # 6 Polarization: -4.06 SS G_CDS: -1.46 Total: -5.52 kcal Atomic # 7 Polarization: -53.06 SS G_CDS: -0.09 Total: -53.15 kcal Atomic # 8 Polarization: -10.61 SS G_CDS: 0.07 Total: -10.54 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.03 Total: 16.82 kcal Atomic # 16 Polarization: 2.49 SS G_CDS: -2.38 Total: 0.12 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -31.41 -10.40 -41.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045494687.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.150 kcal (2) G-P(sol) polarization free energy of solvation -31.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.806 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds