Wall clock time and date at job start Tue Mar 31 2020 13:06:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.50700 * 109.46621 * 2 1 4 4 C 1.33816 * 124.52369 * 90.00511 * 3 2 1 5 5 C 1.37468 * 115.10307 * 179.97438 * 4 3 2 6 6 C 1.36652 * 113.29809 * 359.97438 * 5 4 3 7 7 C 1.46576 * 125.45967 * 180.02562 * 6 5 4 8 8 O 1.21697 * 120.00242 * 359.97438 * 7 6 5 9 9 N 1.34781 * 120.00332 * 180.02562 * 7 6 5 10 10 C 1.46490 * 120.00345 * 179.97438 * 9 7 6 11 11 C 1.53005 * 109.46192 * 59.99939 * 10 9 7 12 12 C 1.53041 * 109.46058 * 300.02470 * 10 9 7 13 13 C 1.53162 * 109.33013 * 301.35917 * 12 10 9 14 14 N 1.46921 * 108.76499 * 305.35631 * 13 12 10 15 15 C 1.36944 * 120.63051 * 233.62547 * 14 13 12 16 16 H 1.07994 * 119.99926 * 151.80800 * 15 14 13 17 17 C 1.38810 * 119.99630 * 331.81886 * 15 14 13 18 18 N 1.31615 * 120.00174 * 343.06922 * 17 15 14 19 19 Si 1.86801 * 119.99868 * 163.07600 * 17 15 14 20 20 H 1.48504 * 109.46972 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.47367 * 119.99479 * 19 17 15 22 22 H 1.48499 * 109.47332 * 239.99462 * 19 17 15 23 23 C 1.46928 * 118.74154 * 53.60825 * 14 13 12 24 24 C 1.53043 * 109.46109 * 179.97438 * 10 9 7 25 25 S 1.70620 * 124.52254 * 269.69860 * 3 2 1 26 26 H 1.08996 * 109.46879 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47244 * 300.00093 * 1 2 3 28 28 H 1.09000 * 109.47197 * 60.00486 * 1 2 3 29 29 H 1.08997 * 109.46741 * 119.99750 * 2 1 3 30 30 H 1.08997 * 109.47116 * 240.00440 * 2 1 3 31 31 H 1.07999 * 122.45007 * 359.96992 * 4 3 2 32 32 H 1.08001 * 123.35242 * 179.97438 * 5 4 3 33 33 H 0.97006 * 119.99453 * 359.97438 * 9 7 6 34 34 H 1.09001 * 109.47184 * 59.99769 * 11 10 9 35 35 H 1.09001 * 109.47335 * 179.97438 * 11 10 9 36 36 H 1.08995 * 109.46789 * 299.99973 * 11 10 9 37 37 H 1.09003 * 109.49508 * 61.29716 * 12 10 9 38 38 H 1.09003 * 109.49615 * 181.39216 * 12 10 9 39 39 H 1.08996 * 109.59195 * 185.57016 * 13 12 10 40 40 H 1.09002 * 109.70268 * 65.20584 * 13 12 10 41 41 H 0.97005 * 119.99826 * 180.02562 * 18 17 15 42 42 H 1.09005 * 109.58686 * 186.60226 * 23 14 13 43 43 H 1.08999 * 109.70274 * 66.24792 * 23 14 13 44 44 H 1.09000 * 109.49773 * 178.60969 * 24 10 9 45 45 H 1.09004 * 109.49945 * 298.66900 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2851 2.1359 1.1025 5 6 2.7376 3.4143 0.8775 6 6 2.8476 3.7230 -0.4491 7 6 3.3030 5.0077 -0.9883 8 8 3.6207 5.9068 -0.2321 9 7 3.3691 5.1937 -2.3216 10 6 3.8237 6.4778 -2.8604 11 6 5.2481 6.7579 -2.3770 12 6 2.8927 7.5920 -2.3767 13 6 1.4619 7.2909 -2.8328 14 7 1.4615 7.0941 -4.2888 15 6 0.6166 7.8149 -5.0900 16 1 0.8924 8.0277 -6.1122 17 6 -0.5942 8.2720 -4.5882 18 7 -1.0872 7.7522 -3.4841 19 14 -1.5238 9.6247 -5.4800 20 1 -0.7626 10.0357 -6.6870 21 1 -2.8608 9.1218 -5.8861 22 1 -1.6876 10.7916 -4.5762 23 6 2.3851 6.1096 -4.8689 24 6 3.8056 6.4241 -4.3898 25 16 2.3615 2.3301 -1.4057 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.8934 -0.5137 -0.8900 31 1 2.1440 1.7377 2.0964 32 1 2.9817 4.1059 1.6703 33 1 3.1156 4.4772 -2.9243 34 1 5.9112 5.9642 -2.7210 35 1 5.5867 7.7132 -2.7782 36 1 5.2612 6.7958 -1.2878 37 1 2.9237 7.6452 -1.2885 38 1 3.2159 8.5443 -2.7973 39 1 0.8129 8.1283 -2.5771 40 1 1.1024 6.3866 -2.3418 41 1 -1.9336 8.0715 -3.1336 42 1 2.3451 6.1677 -5.9567 43 1 2.1040 5.1072 -4.5460 44 1 4.1202 7.3874 -4.7914 45 1 4.4869 5.6463 -4.7346 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001045494687.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:06:45 Heat of formation + Delta-G solvation = -10.439764 kcal Electronic energy + Delta-G solvation = -25777.493115 eV Core-core repulsion = 22306.991601 eV Total energy + Delta-G solvation = -3470.501514 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.48426 -39.39645 -38.45701 -36.13279 -34.68468 -33.69897 -32.56194 -31.62478 -29.57635 -29.07466 -26.31054 -25.89408 -23.98599 -23.47097 -23.08836 -22.30754 -20.36834 -20.19057 -18.85464 -18.72696 -17.14819 -16.85134 -16.47929 -16.20128 -15.93758 -15.59765 -15.27463 -15.14560 -14.93803 -14.90333 -14.62972 -14.30123 -14.10822 -13.76811 -13.38037 -13.29731 -13.17339 -13.02916 -12.88392 -12.76155 -12.59702 -12.55500 -12.41089 -12.20004 -12.06484 -11.97795 -11.77891 -11.68754 -11.41280 -11.33381 -10.65488 -10.54982 -10.09094 -9.61851 -9.52934 -8.67430 -7.86982 -5.33052 -0.47949 0.47489 0.92022 1.42254 1.44615 1.47014 1.57161 2.13057 2.28637 2.50735 3.28320 3.64489 3.71285 3.73996 3.97873 4.05281 4.11242 4.15293 4.35196 4.40435 4.46907 4.49228 4.65640 4.69032 4.76312 4.80200 4.85493 4.91404 4.93625 5.02380 5.03008 5.10616 5.13191 5.19814 5.22542 5.32197 5.34607 5.35950 5.44778 5.47964 5.60253 5.65533 5.74587 6.38264 6.54056 7.14008 7.19476 7.86057 8.38323 9.19127 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.013362 B = 0.004034 C = 0.003474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2094.970603 B = 6939.799769 C = 8059.057127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.054 4.054 3 C -0.184 4.184 4 C -0.161 4.161 5 C -0.057 4.057 6 C -0.300 4.300 7 C 0.587 3.413 8 O -0.564 6.564 9 N -0.703 5.703 10 C 0.185 3.815 11 C -0.150 4.150 12 C -0.139 4.139 13 C 0.194 3.806 14 N -0.606 5.606 15 C -0.260 4.260 16 H 0.072 0.928 17 C -0.052 4.052 18 N -0.937 5.937 19 Si 0.965 3.035 20 H -0.262 1.262 21 H -0.292 1.292 22 H -0.295 1.295 23 C 0.139 3.861 24 C -0.124 4.124 25 S 0.214 5.786 26 H 0.082 0.918 27 H 0.055 0.945 28 H 0.044 0.956 29 H 0.105 0.895 30 H 0.087 0.913 31 H 0.168 0.832 32 H 0.147 0.853 33 H 0.400 0.600 34 H 0.070 0.930 35 H 0.073 0.927 36 H 0.055 0.945 37 H 0.057 0.943 38 H 0.060 0.940 39 H 0.041 0.959 40 H -0.012 1.012 41 H 0.247 0.753 42 H 0.063 0.937 43 H 0.017 0.983 44 H 0.079 0.921 45 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.301 -16.595 5.109 20.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.093 4.093 3 C -0.305 4.305 4 C -0.191 4.191 5 C -0.091 4.091 6 C -0.420 4.420 7 C 0.375 3.625 8 O -0.446 6.446 9 N -0.353 5.353 10 C 0.100 3.900 11 C -0.208 4.208 12 C -0.179 4.179 13 C 0.068 3.932 14 N -0.330 5.330 15 C -0.390 4.390 16 H 0.090 0.910 17 C -0.247 4.247 18 N -0.583 5.583 19 Si 0.793 3.207 20 H -0.187 1.187 21 H -0.219 1.219 22 H -0.222 1.222 23 C 0.014 3.986 24 C -0.164 4.164 25 S 0.482 5.518 26 H 0.101 0.899 27 H 0.074 0.926 28 H 0.063 0.937 29 H 0.123 0.877 30 H 0.106 0.894 31 H 0.186 0.814 32 H 0.165 0.835 33 H 0.236 0.764 34 H 0.089 0.911 35 H 0.092 0.908 36 H 0.074 0.926 37 H 0.075 0.925 38 H 0.078 0.922 39 H 0.060 0.940 40 H 0.006 0.994 41 H 0.056 0.944 42 H 0.082 0.918 43 H 0.035 0.965 44 H 0.098 0.902 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 10.306 -16.203 4.072 19.629 hybrid contribution -1.128 1.080 1.238 1.993 sum 9.178 -15.122 5.310 18.469 Atomic orbital electron populations 1.21826 0.93959 1.03119 1.01949 1.20299 0.96304 0.87609 1.05054 1.24710 1.05574 1.03149 0.97025 1.20115 1.04802 0.93245 1.00890 1.20923 0.96365 0.97118 0.94715 1.24634 1.18343 0.99845 0.99172 1.17226 0.76859 0.85927 0.82486 1.90709 1.51208 1.43710 1.58943 1.45935 1.67146 1.16426 1.05803 1.20289 0.93729 0.81964 0.94058 1.22118 0.94100 1.02537 1.02075 1.22380 0.97189 0.98096 1.00236 1.20295 0.92479 0.97105 0.83335 1.44275 1.42569 1.43680 1.02431 1.19589 0.96524 1.26625 0.96244 0.91048 1.25809 0.97267 1.02574 0.99071 1.70220 1.19577 1.43426 1.25064 0.85243 0.78157 0.79027 0.78252 1.18653 1.21931 1.22197 1.21080 0.89204 0.91005 0.97353 1.22229 0.98158 1.03757 0.92215 1.82918 1.59449 1.01361 1.08031 0.89932 0.92590 0.93672 0.87670 0.89444 0.81434 0.83495 0.76396 0.91089 0.90804 0.92639 0.92487 0.92161 0.94008 0.99382 0.94395 0.91814 0.96521 0.90228 0.88516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.09 9.90 71.98 0.71 -1.38 16 2 C -0.05 -0.71 6.37 29.85 0.19 -0.52 16 3 C -0.18 -3.66 5.53 24.68 0.14 -3.52 16 4 C -0.16 -3.37 9.99 21.08 0.21 -3.16 16 5 C -0.06 -1.55 10.01 21.72 0.22 -1.34 16 6 C -0.30 -9.17 6.45 24.08 0.16 -9.02 16 7 C 0.59 21.23 7.20 86.42 0.62 21.85 16 8 O -0.56 -23.52 13.05 -4.34 -0.06 -23.58 16 9 N -0.70 -23.49 4.10 -426.82 -1.75 -25.24 16 10 C 0.18 6.29 0.66 3.64 0.00 6.30 16 11 C -0.15 -4.41 8.40 71.98 0.60 -3.81 16 12 C -0.14 -5.94 4.66 30.66 0.14 -5.80 16 13 C 0.19 10.00 5.04 86.35 0.44 10.44 16 14 N -0.61 -30.44 2.99 -699.18 -2.09 -32.53 16 15 C -0.26 -14.31 9.58 84.03 0.81 -13.50 16 16 H 0.07 3.78 7.88 -2.91 -0.02 3.75 16 17 C -0.05 -2.96 4.92 84.86 0.42 -2.54 16 18 N -0.94 -57.30 11.20 21.65 0.24 -57.05 16 19 Si 0.96 45.65 29.59 68.60 2.03 47.68 16 20 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 21 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 22 H -0.29 -14.11 7.11 99.48 0.71 -13.40 16 23 C 0.14 5.41 6.24 86.36 0.54 5.95 16 24 C -0.12 -3.85 4.96 30.67 0.15 -3.70 16 25 S 0.21 5.07 22.10 -56.49 -1.25 3.83 16 26 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 27 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.09 0.97 8.14 -2.39 -0.02 0.96 16 31 H 0.17 2.53 8.06 -2.91 -0.02 2.51 16 32 H 0.15 3.97 8.06 -2.91 -0.02 3.95 16 33 H 0.40 12.11 6.38 -92.70 -0.59 11.52 16 34 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 35 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 36 H 0.05 1.87 6.16 -2.39 -0.01 1.86 16 37 H 0.06 2.60 6.20 -2.39 -0.01 2.58 16 38 H 0.06 2.54 8.14 -2.39 -0.02 2.52 16 39 H 0.04 2.49 6.06 -2.39 -0.01 2.47 16 40 H -0.01 -0.67 7.74 -2.39 -0.02 -0.69 16 41 H 0.25 14.70 8.31 -92.70 -0.77 13.93 16 42 H 0.06 2.38 7.93 -2.38 -0.02 2.36 16 43 H 0.02 0.65 6.94 -2.39 -0.02 0.63 16 44 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 45 H 0.10 2.28 8.14 -2.39 -0.02 2.26 16 Total: -1.00 -70.85 365.41 2.86 -67.98 By element: Atomic # 1 Polarization: 22.25 SS G_CDS: 0.40 Total: 22.65 kcal Atomic # 6 Polarization: -9.08 SS G_CDS: 5.34 Total: -3.74 kcal Atomic # 7 Polarization: -111.22 SS G_CDS: -3.60 Total: -114.82 kcal Atomic # 8 Polarization: -23.52 SS G_CDS: -0.06 Total: -23.58 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 2.03 Total: 47.68 kcal Atomic # 16 Polarization: 5.07 SS G_CDS: -1.25 Total: 3.83 kcal Total: -70.85 2.86 -67.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045494687.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.543 kcal (2) G-P(sol) polarization free energy of solvation -70.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds