Wall clock time and date at job start Tue Mar 31 2020 13:12:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50698 * 109.47184 * 2 1 4 4 C 1.37462 * 122.45274 * 264.71861 * 3 2 1 5 5 C 1.36653 * 113.29631 * 179.78375 * 4 3 2 6 6 C 1.46588 * 125.45675 * 180.16444 * 5 4 3 7 7 O 1.21701 * 120.00042 * 0.30481 * 6 5 4 8 8 N 1.34776 * 119.99769 * 180.31524 * 6 5 4 9 9 C 1.46504 * 119.99573 * 179.97438 * 8 6 5 10 10 C 1.52994 * 110.88717 * 62.42719 * 9 8 6 11 11 C 1.55159 * 111.00050 * 186.34795 * 9 8 6 12 12 C 1.54322 * 102.94391 * 82.56956 * 11 9 8 13 13 N 1.47029 * 107.26819 * 22.19278 * 12 11 9 14 14 C 1.36941 * 125.64473 * 181.02011 * 13 12 11 15 15 H 1.07998 * 119.99303 * 180.02562 * 14 13 12 16 16 C 1.38811 * 119.99979 * 0.04592 * 14 13 12 17 17 N 1.31617 * 120.00259 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 119.99685 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.47173 * 89.99886 * 18 16 14 20 20 H 1.48504 * 109.47025 * 209.99531 * 18 16 14 21 21 H 1.48505 * 109.47341 * 329.99824 * 18 16 14 22 22 C 1.47422 * 108.70296 * 1.05970 * 13 12 11 23 23 S 1.75820 * 109.08389 * 0.45004 * 5 4 3 24 24 C 1.33816 * 122.44255 * 85.00186 * 3 2 1 25 25 C 1.50698 * 124.52777 * 0.02562 * 24 3 2 26 26 H 1.09001 * 109.47002 * 299.99404 * 1 2 3 27 27 H 1.08993 * 109.46955 * 59.99842 * 1 2 3 28 28 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46801 * 120.00442 * 2 1 3 30 30 H 1.09001 * 109.46998 * 240.00038 * 2 1 3 31 31 H 1.08002 * 123.35279 * 359.97438 * 4 3 2 32 32 H 0.96999 * 120.00332 * 359.97438 * 8 6 5 33 33 H 1.08999 * 109.47604 * 60.69747 * 10 9 8 34 34 H 1.09003 * 109.47206 * 180.70000 * 10 9 8 35 35 H 1.09005 * 109.47190 * 300.69670 * 10 9 8 36 36 H 1.08994 * 110.71899 * 200.93806 * 11 9 8 37 37 H 1.09005 * 110.71852 * 324.20979 * 11 9 8 38 38 H 1.08996 * 109.88613 * 262.77681 * 12 11 9 39 39 H 1.09000 * 109.87992 * 141.60676 * 12 11 9 40 40 H 0.97000 * 120.00211 * 180.02562 * 17 16 14 41 41 H 1.09004 * 110.36407 * 217.03029 * 22 13 12 42 42 H 1.08995 * 110.45937 * 94.76028 * 22 13 12 43 43 H 1.08991 * 109.47262 * 89.99855 * 25 24 3 44 44 H 1.09003 * 109.46915 * 209.99816 * 25 24 3 45 45 H 1.08997 * 109.47166 * 329.99472 * 25 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3790 2.0806 -1.1550 5 6 2.8054 3.3608 -0.9389 6 6 3.2348 4.3010 -1.9784 7 8 3.2239 3.9623 -3.1473 8 7 3.6418 5.5403 -1.6396 9 6 4.0715 6.4797 -2.6785 10 6 2.9230 6.7930 -3.6395 11 6 4.6433 7.7787 -2.0516 12 6 6.0994 7.3902 -1.7192 13 7 6.4550 6.2527 -2.5802 14 6 7.6573 5.5970 -2.5801 15 1 7.8209 4.7694 -3.2543 16 6 8.6653 5.9959 -1.7131 17 7 8.4658 7.0046 -0.8915 18 14 10.3050 5.1010 -1.7125 19 1 11.2234 5.7498 -2.6826 20 1 10.8999 5.1586 -0.3531 21 1 10.0953 3.6832 -2.1015 22 6 5.3033 5.9355 -3.4441 23 16 2.7642 3.6969 0.7863 24 6 2.1789 2.1304 1.1250 25 6 1.8690 1.6147 2.5067 26 1 -0.3633 0.5137 0.8901 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5139 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 2.3173 1.6330 -2.1360 32 1 3.6503 5.8103 -0.7080 33 1 2.1012 7.2489 -3.0873 34 1 3.2707 7.4827 -4.4087 35 1 2.5788 5.8706 -4.1074 36 1 4.6171 8.5977 -2.7703 37 1 4.0979 8.0419 -1.1453 38 1 6.1757 7.1001 -0.6714 39 1 6.7629 8.2308 -1.9227 40 1 9.1703 7.2835 -0.2859 41 1 5.2184 4.8576 -3.5823 42 1 5.4016 6.4342 -4.4083 43 1 2.7596 1.1494 2.9290 44 1 1.5559 2.4432 3.1420 45 1 1.0674 0.8785 2.4483 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046819214.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:12:40 Heat of formation + Delta-G solvation = 9.136101 kcal Electronic energy + Delta-G solvation = -25456.907775 eV Core-core repulsion = 21987.255134 eV Total energy + Delta-G solvation = -3469.652641 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.88991 -38.75975 -37.11938 -33.91741 -33.03071 -31.94597 -31.54393 -30.01774 -28.67603 -27.08270 -25.63250 -24.06232 -23.90087 -23.09198 -20.71777 -20.10832 -19.15269 -18.61994 -17.72810 -16.88141 -16.15377 -15.43736 -14.98117 -14.76210 -14.58172 -14.37577 -14.17524 -13.78504 -13.65216 -13.29750 -13.21025 -12.84698 -12.77819 -12.51690 -12.16617 -12.10939 -11.91881 -11.85014 -11.65760 -11.56734 -11.49948 -11.15865 -10.86344 -10.85629 -10.72295 -10.38736 -10.34454 -10.05331 -9.98341 -9.62240 -9.37661 -8.69332 -8.58675 -8.50651 -8.36726 -6.75984 -5.66978 -2.98538 0.57644 1.49120 1.90800 2.38363 3.41402 3.43266 3.48354 3.50473 3.56938 4.54524 4.63727 4.75498 4.88877 5.00064 5.08838 5.17370 5.23079 5.31116 5.40731 5.46929 5.49858 5.51314 5.63970 5.64412 5.70338 5.75082 5.76437 5.94976 6.02577 6.03476 6.14438 6.17661 6.30419 6.36408 6.41519 6.43327 6.55411 6.70340 6.86250 7.14568 7.58068 7.59512 7.82888 7.88019 8.29995 8.53946 9.27632 9.87652 10.53738 11.45187 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.013093 B = 0.003943 C = 0.003475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2137.997948 B = 7098.823864 C = 8055.039352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.063 4.063 3 C -0.119 4.119 4 C -0.054 4.054 5 C -0.253 4.253 6 C 0.593 3.407 7 O -0.530 6.530 8 N -0.696 5.696 9 C 0.157 3.843 10 C -0.149 4.149 11 C -0.147 4.147 12 C 0.177 3.823 13 N -0.603 5.603 14 C -0.220 4.220 15 H 0.076 0.924 16 C -0.010 4.010 17 N -0.925 5.925 18 Si 0.910 3.090 19 H -0.289 1.289 20 H -0.291 1.291 21 H -0.282 1.282 22 C 0.131 3.869 23 S 0.200 5.800 24 C -0.204 4.204 25 C -0.084 4.084 26 H 0.054 0.946 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.150 0.850 32 H 0.394 0.606 33 H 0.050 0.950 34 H 0.064 0.936 35 H 0.071 0.929 36 H 0.074 0.926 37 H 0.063 0.937 38 H 0.045 0.955 39 H 0.044 0.956 40 H 0.251 0.749 41 H 0.056 0.944 42 H 0.026 0.974 43 H 0.076 0.924 44 H 0.068 0.932 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.814 -7.720 5.978 20.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.102 4.102 3 C -0.132 4.132 4 C -0.087 4.087 5 C -0.374 4.374 6 C 0.379 3.621 7 O -0.409 6.409 8 N -0.346 5.346 9 C 0.070 3.930 10 C -0.208 4.208 11 C -0.186 4.186 12 C 0.053 3.947 13 N -0.329 5.329 14 C -0.349 4.349 15 H 0.094 0.906 16 C -0.205 4.205 17 N -0.573 5.573 18 Si 0.740 3.260 19 H -0.217 1.217 20 H -0.217 1.217 21 H -0.208 1.208 22 C 0.004 3.996 23 S 0.469 5.531 24 C -0.323 4.323 25 C -0.142 4.142 26 H 0.073 0.927 27 H 0.076 0.924 28 H 0.075 0.925 29 H 0.089 0.911 30 H 0.091 0.909 31 H 0.168 0.832 32 H 0.228 0.772 33 H 0.069 0.931 34 H 0.083 0.917 35 H 0.090 0.910 36 H 0.093 0.907 37 H 0.082 0.918 38 H 0.063 0.937 39 H 0.062 0.938 40 H 0.061 0.939 41 H 0.074 0.926 42 H 0.044 0.956 43 H 0.095 0.905 44 H 0.087 0.913 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -17.216 -6.625 6.159 19.448 hybrid contribution 0.721 -1.503 -0.288 1.691 sum -16.495 -8.128 5.871 19.304 Atomic orbital electron populations 1.21749 0.94929 1.01494 1.02226 1.20224 0.95824 0.91327 1.02840 1.18597 1.04899 0.98323 0.91397 1.20549 0.96600 0.91876 0.99687 1.24647 1.15232 1.00447 0.97031 1.16827 0.77130 0.80977 0.87204 1.90767 1.54945 1.76886 1.18276 1.45678 1.65831 1.12808 1.10268 1.21524 0.94105 0.89176 0.88186 1.21993 0.97402 1.02413 0.98971 1.23242 0.99903 0.95374 1.00045 1.21155 0.87928 0.90645 0.95006 1.44440 1.10791 1.35798 1.41859 1.19069 0.88363 1.10574 1.16871 0.90606 1.24748 0.98341 0.98669 0.98762 1.69945 1.32608 1.28881 1.25870 0.86141 0.83928 0.79071 0.76813 1.21655 1.21738 1.20770 1.21893 0.85676 0.99320 0.92692 1.83050 1.60020 1.10705 0.99277 1.23977 1.08274 0.99878 1.00213 1.20376 1.02437 1.01329 0.90083 0.92677 0.92447 0.92477 0.91072 0.90874 0.83219 0.77175 0.93092 0.91688 0.90999 0.90705 0.91797 0.93671 0.93762 0.93911 0.92575 0.95609 0.90546 0.91259 0.90378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.83 37.16 0.37 -0.76 16 2 C -0.06 -0.56 5.54 -27.88 -0.15 -0.72 16 3 C -0.12 -1.40 5.04 -106.46 -0.54 -1.94 16 4 C -0.05 -0.76 9.78 -40.44 -0.40 -1.16 16 5 C -0.25 -3.94 6.45 -36.79 -0.24 -4.18 16 6 C 0.59 10.85 7.17 -12.89 -0.09 10.76 16 7 O -0.53 -10.99 13.61 5.19 0.07 -10.92 16 8 N -0.70 -12.27 5.17 -46.94 -0.24 -12.52 16 9 C 0.16 2.88 0.82 -129.67 -0.11 2.77 16 10 C -0.15 -2.35 8.62 37.15 0.32 -2.03 16 11 C -0.15 -2.67 5.99 -24.90 -0.15 -2.82 16 12 C 0.18 4.26 5.36 -3.06 -0.02 4.25 16 13 N -0.60 -15.80 3.39 -170.07 -0.58 -16.37 16 14 C -0.22 -6.36 10.28 -15.06 -0.15 -6.52 16 15 H 0.08 2.17 7.83 -52.49 -0.41 1.76 16 16 C -0.01 -0.28 5.49 -17.43 -0.10 -0.37 16 17 N -0.92 -27.25 10.31 55.49 0.57 -26.68 16 18 Si 0.91 22.71 29.55 -169.99 -5.02 17.68 16 19 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 20 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 21 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 22 C 0.13 2.96 6.11 -2.53 -0.02 2.95 16 23 S 0.20 2.53 22.10 -107.50 -2.38 0.15 16 24 C -0.20 -2.29 6.28 -35.86 -0.23 -2.51 16 25 C -0.08 -0.67 9.71 36.00 0.35 -0.33 16 26 H 0.05 0.41 7.24 -51.93 -0.38 0.03 16 27 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.07 0.56 7.46 -51.93 -0.39 0.18 16 30 H 0.07 0.64 8.10 -51.93 -0.42 0.22 16 31 H 0.15 2.07 8.06 -52.49 -0.42 1.64 16 32 H 0.39 6.34 7.60 -40.82 -0.31 6.03 16 33 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.06 0.94 8.13 -51.93 -0.42 0.52 16 35 H 0.07 1.23 6.45 -51.93 -0.33 0.89 16 36 H 0.07 1.25 8.04 -51.93 -0.42 0.84 16 37 H 0.06 1.00 8.05 -51.93 -0.42 0.59 16 38 H 0.05 1.18 7.38 -51.93 -0.38 0.80 16 39 H 0.04 1.18 7.51 -51.93 -0.39 0.79 16 40 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 41 H 0.06 1.38 6.31 -51.93 -0.33 1.05 16 42 H 0.03 0.58 8.03 -51.93 -0.42 0.17 16 43 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 44 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.08 0.52 6.40 -51.93 -0.33 0.19 16 LS Contribution 369.52 15.07 5.57 5.57 Total: -1.00 -32.67 369.52 -10.17 -42.84 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: -7.02 Total: 2.84 kcal Atomic # 6 Polarization: -1.45 SS G_CDS: -1.14 Total: -2.60 kcal Atomic # 7 Polarization: -55.32 SS G_CDS: -0.25 Total: -55.57 kcal Atomic # 8 Polarization: -10.99 SS G_CDS: 0.07 Total: -10.92 kcal Atomic # 14 Polarization: 22.71 SS G_CDS: -5.02 Total: 17.68 kcal Atomic # 16 Polarization: 2.53 SS G_CDS: -2.38 Total: 0.15 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.67 -10.17 -42.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046819214.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.977 kcal (2) G-P(sol) polarization free energy of solvation -32.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.841 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds