Wall clock time and date at job start Tue Mar 31 2020 13:12:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50698 * 109.47184 * 2 1 4 4 C 1.37462 * 122.45274 * 264.71861 * 3 2 1 5 5 C 1.36653 * 113.29631 * 179.78375 * 4 3 2 6 6 C 1.46588 * 125.45675 * 180.16444 * 5 4 3 7 7 O 1.21701 * 120.00042 * 0.30481 * 6 5 4 8 8 N 1.34776 * 119.99769 * 180.31524 * 6 5 4 9 9 C 1.46504 * 119.99573 * 179.97438 * 8 6 5 10 10 C 1.52994 * 110.88717 * 62.42719 * 9 8 6 11 11 C 1.55159 * 111.00050 * 186.34795 * 9 8 6 12 12 C 1.54322 * 102.94391 * 82.56956 * 11 9 8 13 13 N 1.47029 * 107.26819 * 22.19278 * 12 11 9 14 14 C 1.36941 * 125.64473 * 181.02011 * 13 12 11 15 15 H 1.07998 * 119.99303 * 180.02562 * 14 13 12 16 16 C 1.38811 * 119.99979 * 0.04592 * 14 13 12 17 17 N 1.31617 * 120.00259 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 119.99685 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.47173 * 89.99886 * 18 16 14 20 20 H 1.48504 * 109.47025 * 209.99531 * 18 16 14 21 21 H 1.48505 * 109.47341 * 329.99824 * 18 16 14 22 22 C 1.47422 * 108.70296 * 1.05970 * 13 12 11 23 23 S 1.75820 * 109.08389 * 0.45004 * 5 4 3 24 24 C 1.33816 * 122.44255 * 85.00186 * 3 2 1 25 25 C 1.50698 * 124.52777 * 0.02562 * 24 3 2 26 26 H 1.09001 * 109.47002 * 299.99404 * 1 2 3 27 27 H 1.08993 * 109.46955 * 59.99842 * 1 2 3 28 28 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46801 * 120.00442 * 2 1 3 30 30 H 1.09001 * 109.46998 * 240.00038 * 2 1 3 31 31 H 1.08002 * 123.35279 * 359.97438 * 4 3 2 32 32 H 0.96999 * 120.00332 * 359.97438 * 8 6 5 33 33 H 1.08999 * 109.47604 * 60.69747 * 10 9 8 34 34 H 1.09003 * 109.47206 * 180.70000 * 10 9 8 35 35 H 1.09005 * 109.47190 * 300.69670 * 10 9 8 36 36 H 1.08994 * 110.71899 * 200.93806 * 11 9 8 37 37 H 1.09005 * 110.71852 * 324.20979 * 11 9 8 38 38 H 1.08996 * 109.88613 * 262.77681 * 12 11 9 39 39 H 1.09000 * 109.87992 * 141.60676 * 12 11 9 40 40 H 0.97000 * 120.00211 * 180.02562 * 17 16 14 41 41 H 1.09004 * 110.36407 * 217.03029 * 22 13 12 42 42 H 1.08995 * 110.45937 * 94.76028 * 22 13 12 43 43 H 1.08991 * 109.47262 * 89.99855 * 25 24 3 44 44 H 1.09003 * 109.46915 * 209.99816 * 25 24 3 45 45 H 1.08997 * 109.47166 * 329.99472 * 25 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3790 2.0806 -1.1550 5 6 2.8054 3.3608 -0.9389 6 6 3.2348 4.3010 -1.9784 7 8 3.2239 3.9623 -3.1473 8 7 3.6418 5.5403 -1.6396 9 6 4.0715 6.4797 -2.6785 10 6 2.9230 6.7930 -3.6395 11 6 4.6433 7.7787 -2.0516 12 6 6.0994 7.3902 -1.7192 13 7 6.4550 6.2527 -2.5802 14 6 7.6573 5.5970 -2.5801 15 1 7.8209 4.7694 -3.2543 16 6 8.6653 5.9959 -1.7131 17 7 8.4658 7.0046 -0.8915 18 14 10.3050 5.1010 -1.7125 19 1 11.2234 5.7498 -2.6826 20 1 10.8999 5.1586 -0.3531 21 1 10.0953 3.6832 -2.1015 22 6 5.3033 5.9355 -3.4441 23 16 2.7642 3.6969 0.7863 24 6 2.1789 2.1304 1.1250 25 6 1.8690 1.6147 2.5067 26 1 -0.3633 0.5137 0.8901 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5139 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 2.3173 1.6330 -2.1360 32 1 3.6503 5.8103 -0.7080 33 1 2.1012 7.2489 -3.0873 34 1 3.2707 7.4827 -4.4087 35 1 2.5788 5.8706 -4.1074 36 1 4.6171 8.5977 -2.7703 37 1 4.0979 8.0419 -1.1453 38 1 6.1757 7.1001 -0.6714 39 1 6.7629 8.2308 -1.9227 40 1 9.1703 7.2835 -0.2859 41 1 5.2184 4.8576 -3.5823 42 1 5.4016 6.4342 -4.4083 43 1 2.7596 1.1494 2.9290 44 1 1.5559 2.4432 3.1420 45 1 1.0674 0.8785 2.4483 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046819214.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:12:39 Heat of formation + Delta-G solvation = -10.589328 kcal Electronic energy + Delta-G solvation = -25457.763133 eV Core-core repulsion = 21987.255134 eV Total energy + Delta-G solvation = -3470.507999 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.32293 -39.81790 -38.69242 -35.71561 -34.08557 -33.51731 -32.41359 -31.70624 -30.39400 -28.04236 -27.53535 -25.53159 -24.84051 -24.34932 -22.30590 -21.61473 -20.65118 -19.69458 -18.99709 -18.69909 -17.40633 -16.96025 -16.62516 -16.22608 -16.05294 -15.62078 -15.29360 -15.12671 -15.01200 -14.53321 -14.21248 -14.06140 -13.90484 -13.61167 -13.58565 -13.45144 -13.27370 -13.13608 -12.89795 -12.84509 -12.78133 -12.55227 -12.40129 -12.13133 -12.07301 -12.02171 -11.83566 -11.73164 -11.62193 -11.54241 -10.85478 -10.72548 -10.12021 -9.60733 -9.35656 -8.88064 -7.87240 -5.21057 -0.49514 0.46970 0.90796 1.34788 1.41916 1.43510 1.52333 2.07091 2.24603 2.46765 3.30755 3.49818 3.67221 3.81538 3.85345 4.01627 4.11012 4.15709 4.15947 4.39562 4.53709 4.61061 4.63427 4.66042 4.70870 4.72616 4.75516 4.83956 4.90370 4.94625 4.98472 5.01398 5.05335 5.09468 5.16351 5.32740 5.33963 5.40428 5.46072 5.55195 5.59149 5.65251 5.74522 6.18322 6.48906 7.10082 7.15680 7.75441 8.40019 9.22636 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.013093 B = 0.003943 C = 0.003475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2137.997948 B = 7098.823864 C = 8055.039352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.061 4.061 3 C -0.131 4.131 4 C -0.052 4.052 5 C -0.297 4.297 6 C 0.589 3.411 7 O -0.565 6.565 8 N -0.696 5.696 9 C 0.164 3.836 10 C -0.139 4.139 11 C -0.129 4.129 12 C 0.185 3.815 13 N -0.621 5.621 14 C -0.244 4.244 15 H 0.067 0.933 16 C -0.057 4.057 17 N -0.944 5.944 18 Si 0.974 3.026 19 H -0.284 1.284 20 H -0.288 1.288 21 H -0.277 1.277 22 C 0.128 3.872 23 S 0.214 5.786 24 C -0.188 4.188 25 C -0.087 4.087 26 H 0.061 0.939 27 H 0.044 0.956 28 H 0.073 0.927 29 H 0.087 0.913 30 H 0.071 0.929 31 H 0.143 0.857 32 H 0.401 0.599 33 H 0.077 0.923 34 H 0.079 0.921 35 H 0.055 0.945 36 H 0.097 0.903 37 H 0.096 0.904 38 H 0.016 0.984 39 H 0.012 0.988 40 H 0.248 0.752 41 H 0.029 0.971 42 H 0.028 0.972 43 H 0.087 0.913 44 H 0.082 0.918 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.341 -8.373 7.617 22.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.101 4.101 3 C -0.143 4.143 4 C -0.086 4.086 5 C -0.417 4.417 6 C 0.376 3.624 7 O -0.447 6.447 8 N -0.346 5.346 9 C 0.078 3.922 10 C -0.198 4.198 11 C -0.167 4.167 12 C 0.060 3.940 13 N -0.347 5.347 14 C -0.373 4.373 15 H 0.084 0.916 16 C -0.251 4.251 17 N -0.593 5.593 18 Si 0.802 3.198 19 H -0.211 1.211 20 H -0.214 1.214 21 H -0.203 1.203 22 C 0.002 3.998 23 S 0.483 5.517 24 C -0.308 4.308 25 C -0.145 4.145 26 H 0.080 0.920 27 H 0.064 0.936 28 H 0.092 0.908 29 H 0.106 0.894 30 H 0.090 0.910 31 H 0.160 0.840 32 H 0.237 0.763 33 H 0.096 0.904 34 H 0.098 0.902 35 H 0.074 0.926 36 H 0.115 0.885 37 H 0.115 0.885 38 H 0.035 0.965 39 H 0.030 0.970 40 H 0.058 0.942 41 H 0.047 0.953 42 H 0.046 0.954 43 H 0.105 0.895 44 H 0.101 0.899 45 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -18.768 -7.268 7.803 21.586 hybrid contribution 1.196 -1.375 -0.765 1.977 sum -17.572 -8.643 7.038 20.809 Atomic orbital electron populations 1.21729 0.93833 1.02544 1.01951 1.20302 0.96691 0.89467 1.03614 1.18819 1.05197 0.99749 0.90562 1.20745 0.95748 0.91633 1.00458 1.24486 1.18176 1.00765 0.98275 1.17222 0.76426 0.81283 0.87438 1.90731 1.56549 1.77537 1.19892 1.45669 1.65566 1.12810 1.10515 1.21449 0.93428 0.88866 0.88479 1.21920 0.96901 1.02172 0.98779 1.23130 0.95792 0.95657 1.02130 1.20948 0.91150 0.88727 0.93129 1.44682 1.11012 1.36315 1.42685 1.19313 0.90045 1.10874 1.17104 0.91553 1.25511 1.01468 0.99559 0.98517 1.70140 1.33268 1.29767 1.26115 0.85161 0.79805 0.78066 0.76783 1.21089 1.21370 1.20286 1.21987 0.86820 0.97915 0.93080 1.82916 1.59966 1.11909 0.96869 1.24480 1.05879 0.98730 1.01736 1.20569 1.03607 1.02333 0.87987 0.92044 0.93642 0.90773 0.89402 0.91041 0.83978 0.76327 0.90364 0.90211 0.92629 0.88493 0.88534 0.96534 0.97016 0.94244 0.95260 0.95399 0.89471 0.89925 0.88400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.87 9.83 71.98 0.71 -1.16 16 2 C -0.06 -0.97 5.54 29.85 0.17 -0.81 16 3 C -0.13 -2.91 5.04 -21.05 -0.11 -3.02 16 4 C -0.05 -1.47 9.78 21.72 0.21 -1.26 16 5 C -0.30 -9.39 6.45 24.08 0.16 -9.24 16 6 C 0.59 22.14 7.17 86.42 0.62 22.76 16 7 O -0.57 -24.49 13.61 -4.35 -0.06 -24.55 16 8 N -0.70 -24.59 5.17 -420.64 -2.17 -26.77 16 9 C 0.16 5.97 0.82 4.99 0.00 5.98 16 10 C -0.14 -4.16 8.62 71.98 0.62 -3.54 16 11 C -0.13 -4.49 5.99 31.78 0.19 -4.30 16 12 C 0.19 9.07 5.36 86.73 0.47 9.53 16 13 N -0.62 -33.55 3.39 -691.99 -2.35 -35.89 16 14 C -0.24 -14.57 10.28 84.03 0.86 -13.70 16 15 H 0.07 3.96 7.83 -2.91 -0.02 3.93 16 16 C -0.06 -3.35 5.49 84.86 0.47 -2.88 16 17 N -0.94 -56.87 10.31 21.65 0.22 -56.65 16 18 Si 0.97 47.40 29.55 68.60 2.03 49.43 16 19 H -0.28 -13.54 7.11 99.48 0.71 -12.83 16 20 H -0.29 -13.76 7.11 99.48 0.71 -13.06 16 21 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 22 C 0.13 5.96 6.11 86.85 0.53 6.49 16 23 S 0.21 5.20 22.10 -56.49 -1.25 3.95 16 24 C -0.19 -3.84 6.28 24.68 0.15 -3.68 16 25 C -0.09 -1.09 9.71 71.24 0.69 -0.40 16 26 H 0.06 0.72 7.24 -2.39 -0.02 0.71 16 27 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 28 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.09 1.11 7.46 -2.39 -0.02 1.09 16 30 H 0.07 1.16 8.10 -2.39 -0.02 1.14 16 31 H 0.14 4.12 8.06 -2.91 -0.02 4.10 16 32 H 0.40 12.78 7.60 -92.71 -0.70 12.08 16 33 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 34 H 0.08 2.14 8.13 -2.39 -0.02 2.12 16 35 H 0.05 1.87 6.45 -2.38 -0.02 1.86 16 36 H 0.10 3.00 8.04 -2.39 -0.02 2.98 16 37 H 0.10 2.77 8.05 -2.38 -0.02 2.75 16 38 H 0.02 0.89 7.38 -2.39 -0.02 0.87 16 39 H 0.01 0.64 7.51 -2.39 -0.02 0.62 16 40 H 0.25 14.48 8.31 -92.71 -0.77 13.71 16 41 H 0.03 1.51 6.31 -2.39 -0.02 1.49 16 42 H 0.03 1.28 8.03 -2.39 -0.02 1.26 16 43 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 44 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 45 H 0.10 0.90 6.40 -2.39 -0.02 0.89 16 Total: -1.00 -73.81 369.52 2.45 -71.37 By element: Atomic # 1 Polarization: 18.05 SS G_CDS: 0.29 Total: 18.34 kcal Atomic # 6 Polarization: -4.97 SS G_CDS: 5.74 Total: 0.77 kcal Atomic # 7 Polarization: -115.01 SS G_CDS: -4.30 Total: -119.31 kcal Atomic # 8 Polarization: -24.49 SS G_CDS: -0.06 Total: -24.55 kcal Atomic # 14 Polarization: 47.40 SS G_CDS: 2.03 Total: 49.43 kcal Atomic # 16 Polarization: 5.20 SS G_CDS: -1.25 Total: 3.95 kcal Total: -73.81 2.45 -71.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046819214.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.776 kcal (2) G-P(sol) polarization free energy of solvation -73.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds