Wall clock time and date at job start Tue Mar 31 2020 13:12:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50704 * 109.46886 * 2 1 4 4 C 1.37464 * 122.44909 * 265.28957 * 3 2 1 5 5 C 1.36652 * 113.29517 * 180.18223 * 4 3 2 6 6 C 1.46587 * 125.45589 * 179.83980 * 5 4 3 7 7 O 1.21693 * 120.00439 * 359.72058 * 6 5 4 8 8 N 1.34777 * 119.99792 * 179.71414 * 6 5 4 9 9 C 1.46499 * 120.00081 * 179.72235 * 8 6 5 10 10 C 1.52996 * 110.64364 * 300.70764 * 9 8 6 11 11 C 1.55159 * 110.72176 * 177.56293 * 9 8 6 12 12 C 1.55389 * 101.36515 * 277.04544 * 11 9 8 13 13 N 1.47420 * 104.87701 * 323.01712 * 12 11 9 14 14 C 1.36934 * 125.64977 * 204.09745 * 13 12 11 15 15 H 1.08004 * 119.99983 * 169.97955 * 14 13 12 16 16 C 1.38814 * 120.00191 * 349.98255 * 14 13 12 17 17 N 1.31620 * 119.99657 * 350.42049 * 16 14 13 18 18 Si 1.86799 * 120.00069 * 170.42176 * 16 14 13 19 19 H 1.48498 * 109.47031 * 94.14125 * 18 16 14 20 20 H 1.48500 * 109.46946 * 214.13827 * 18 16 14 21 21 H 1.48493 * 109.47169 * 334.14081 * 18 16 14 22 22 C 1.47024 * 108.70288 * 24.13192 * 13 12 11 23 23 S 1.75828 * 109.08386 * 359.57572 * 5 4 3 24 24 C 1.33820 * 122.44507 * 85.00102 * 3 2 1 25 25 C 1.50694 * 124.52667 * 359.97438 * 24 3 2 26 26 H 1.08998 * 109.47102 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47593 * 300.00123 * 1 2 3 28 28 H 1.08998 * 109.47413 * 60.00196 * 1 2 3 29 29 H 1.08994 * 109.47165 * 240.00157 * 2 1 3 30 30 H 1.09006 * 109.47045 * 119.99748 * 2 1 3 31 31 H 1.07994 * 123.35712 * 0.02562 * 4 3 2 32 32 H 0.97008 * 119.99940 * 0.02562 * 8 6 5 33 33 H 1.09004 * 109.46935 * 59.29716 * 10 9 8 34 34 H 1.09001 * 109.47419 * 179.29564 * 10 9 8 35 35 H 1.09003 * 109.47000 * 299.29649 * 10 9 8 36 36 H 1.09001 * 111.00307 * 35.21520 * 11 9 8 37 37 H 1.08999 * 111.00249 * 159.07051 * 11 9 8 38 38 H 1.08994 * 110.34167 * 204.16231 * 12 11 9 39 39 H 1.08999 * 110.35122 * 81.87240 * 12 11 9 40 40 H 0.97002 * 119.99842 * 180.02562 * 17 16 14 41 41 H 1.08997 * 109.88492 * 239.52546 * 22 13 12 42 42 H 1.08993 * 110.01275 * 118.42941 * 22 13 12 43 43 H 1.09004 * 109.47370 * 179.97438 * 25 24 3 44 44 H 1.08998 * 109.46891 * 300.00236 * 25 24 3 45 45 H 1.09004 * 109.47147 * 59.99870 * 25 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3679 2.0845 -1.1561 5 6 2.8045 3.3611 -0.9391 6 6 3.2324 4.3017 -1.9788 7 8 3.2207 3.9634 -3.1477 8 7 3.6388 5.5413 -1.6401 9 6 4.0723 6.4793 -2.6786 10 6 5.2577 5.9090 -3.4599 11 6 4.4339 7.8552 -2.0593 12 6 3.0334 8.5195 -1.9502 13 7 2.3103 8.0785 -3.1567 14 6 1.2585 8.7327 -3.7406 15 1 0.8990 8.4199 -4.7099 16 6 0.6544 9.7978 -3.0868 17 7 0.9615 10.0608 -1.8343 18 14 -0.5944 10.8579 -3.9847 19 1 -1.9628 10.3503 -3.7106 20 1 -0.4832 12.2613 -3.5121 21 1 -0.3300 10.8048 -5.4449 22 6 2.9048 6.8194 -3.6289 23 16 2.7634 3.6973 0.7862 24 6 2.1788 2.1306 1.1250 25 6 1.8678 1.6152 2.5066 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 2.2963 1.6404 -2.1379 32 1 3.6484 5.8109 -0.7083 33 1 4.9681 4.9649 -3.9215 34 1 5.5562 6.6156 -4.2343 35 1 6.0932 5.7401 -2.7805 36 1 4.8900 7.7337 -1.0768 37 1 5.0855 8.4234 -2.7232 38 1 3.1288 9.6052 -1.9406 39 1 2.5194 8.1752 -1.0528 40 1 0.5391 10.8049 -1.3773 41 1 3.2784 6.9441 -4.6452 42 1 2.1613 6.0229 -3.6025 43 1 2.0757 2.3941 3.2403 44 1 0.8159 1.3351 2.5616 45 1 2.4874 0.7435 2.7172 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046819216.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:12:44 Heat of formation + Delta-G solvation = 8.324663 kcal Electronic energy + Delta-G solvation = -25280.039379 eV Core-core repulsion = 21810.351552 eV Total energy + Delta-G solvation = -3469.687827 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.96102 -38.79800 -37.15636 -33.97360 -33.04731 -31.96628 -31.59193 -30.02519 -28.66472 -27.10848 -25.67186 -24.09778 -23.91228 -23.08930 -20.70350 -20.30631 -19.13887 -18.66212 -17.78831 -16.88120 -16.19700 -15.50664 -14.99314 -14.79287 -14.63657 -14.33989 -14.23685 -13.75253 -13.69434 -13.41115 -13.10535 -12.90110 -12.76528 -12.57066 -12.25492 -12.17811 -12.05653 -11.71813 -11.69037 -11.57871 -11.51752 -11.15296 -10.95228 -10.79380 -10.77367 -10.42439 -10.36630 -10.08013 -10.00598 -9.67420 -9.40742 -8.75633 -8.59851 -8.54939 -8.42435 -6.74968 -5.71767 -3.02767 0.52042 1.43723 1.84372 2.33112 3.36162 3.42250 3.47837 3.48639 3.50352 4.52921 4.59161 4.72160 4.86625 4.98289 5.06577 5.14227 5.21264 5.27624 5.39356 5.44563 5.47397 5.50209 5.56540 5.60194 5.69605 5.74118 5.74472 5.91658 6.02923 6.03681 6.16619 6.20903 6.25999 6.32256 6.38190 6.43845 6.51909 6.71034 6.86011 7.14332 7.47598 7.55731 7.78555 7.81478 8.28845 8.47390 9.23412 9.85089 10.52895 11.41814 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.014684 B = 0.003452 C = 0.003207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1906.352760 B = 8108.339349 C = 8729.558015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.061 4.061 3 C -0.121 4.121 4 C -0.052 4.052 5 C -0.256 4.256 6 C 0.591 3.409 7 O -0.527 6.527 8 N -0.703 5.703 9 C 0.161 3.839 10 C -0.151 4.151 11 C -0.149 4.149 12 C 0.174 3.826 13 N -0.602 5.602 14 C -0.224 4.224 15 H 0.075 0.925 16 C -0.008 4.008 17 N -0.920 5.920 18 Si 0.910 3.090 19 H -0.290 1.290 20 H -0.290 1.290 21 H -0.280 1.280 22 C 0.136 3.864 23 S 0.200 5.800 24 C -0.203 4.203 25 C -0.081 4.081 26 H 0.057 0.943 27 H 0.055 0.945 28 H 0.058 0.942 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.151 0.849 32 H 0.394 0.606 33 H 0.074 0.926 34 H 0.065 0.935 35 H 0.050 0.950 36 H 0.064 0.936 37 H 0.078 0.922 38 H 0.071 0.929 39 H 0.025 0.975 40 H 0.252 0.748 41 H 0.032 0.968 42 H 0.034 0.966 43 H 0.067 0.933 44 H 0.077 0.923 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.180 -17.763 9.434 21.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.100 4.100 3 C -0.134 4.134 4 C -0.085 4.085 5 C -0.377 4.377 6 C 0.377 3.623 7 O -0.406 6.406 8 N -0.353 5.353 9 C 0.075 3.925 10 C -0.209 4.209 11 C -0.188 4.188 12 C 0.049 3.951 13 N -0.329 5.329 14 C -0.353 4.353 15 H 0.093 0.907 16 C -0.205 4.205 17 N -0.568 5.568 18 Si 0.740 3.260 19 H -0.217 1.217 20 H -0.216 1.216 21 H -0.206 1.206 22 C 0.010 3.990 23 S 0.469 5.531 24 C -0.322 4.322 25 C -0.140 4.140 26 H 0.076 0.924 27 H 0.074 0.926 28 H 0.077 0.923 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.168 0.832 32 H 0.228 0.772 33 H 0.093 0.907 34 H 0.084 0.916 35 H 0.069 0.931 36 H 0.083 0.917 37 H 0.097 0.903 38 H 0.089 0.911 39 H 0.043 0.957 40 H 0.062 0.938 41 H 0.049 0.951 42 H 0.051 0.949 43 H 0.086 0.914 44 H 0.096 0.904 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 6.411 -16.495 9.527 20.099 hybrid contribution -1.181 -0.495 -0.740 1.479 sum 5.230 -16.990 8.787 19.830 Atomic orbital electron populations 1.21740 0.94816 1.01537 1.02441 1.20209 0.95974 0.91192 1.02659 1.18609 1.04931 0.98445 0.91380 1.20561 0.96333 0.91965 0.99674 1.24645 1.15684 1.00223 0.97104 1.16859 0.77128 0.81086 0.87227 1.90778 1.54307 1.77349 1.18138 1.45866 1.66483 1.12551 1.10412 1.21360 0.94654 0.88253 0.88197 1.22061 0.96280 1.02673 0.99927 1.23446 1.01203 0.94394 0.99785 1.21482 0.85423 0.98845 0.89344 1.44474 1.36330 1.21751 1.30325 1.19041 1.06550 1.09944 0.99725 0.90676 1.24790 0.99597 1.00221 0.95843 1.69944 1.46272 1.31283 1.09302 0.86130 0.81031 0.79875 0.78919 1.21702 1.21647 1.20601 1.21606 0.93001 0.89614 0.94777 1.83057 1.60238 1.10580 0.99181 1.23992 1.08465 0.99470 1.00279 1.20345 1.02484 1.01222 0.89905 0.92441 0.92637 0.92332 0.90969 0.91137 0.83179 0.77152 0.90721 0.91624 0.93112 0.91717 0.90344 0.91091 0.95698 0.93825 0.95059 0.94852 0.91390 0.90410 0.90491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 9.89 37.16 0.37 -0.84 16 2 C -0.06 -0.52 5.83 -27.88 -0.16 -0.68 16 3 C -0.12 -1.35 5.04 -106.45 -0.54 -1.89 16 4 C -0.05 -0.71 9.78 -40.44 -0.40 -1.10 16 5 C -0.26 -3.82 6.45 -36.79 -0.24 -4.06 16 6 C 0.59 10.51 7.00 -12.89 -0.09 10.42 16 7 O -0.53 -10.74 13.78 5.19 0.07 -10.67 16 8 N -0.70 -12.07 5.14 -47.23 -0.24 -12.31 16 9 C 0.16 2.97 0.80 -129.98 -0.10 2.87 16 10 C -0.15 -2.43 8.41 37.16 0.31 -2.12 16 11 C -0.15 -2.72 6.12 -24.32 -0.15 -2.87 16 12 C 0.17 4.16 5.41 -2.27 -0.01 4.15 16 13 N -0.60 -15.88 3.40 -169.77 -0.58 -16.46 16 14 C -0.22 -6.46 10.24 -15.06 -0.15 -6.62 16 15 H 0.08 2.13 7.85 -52.48 -0.41 1.72 16 16 C -0.01 -0.24 5.40 -17.43 -0.09 -0.33 16 17 N -0.92 -27.11 10.68 55.49 0.59 -26.52 16 18 Si 0.91 22.50 29.56 -169.99 -5.03 17.47 16 19 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 20 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 21 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 22 C 0.14 3.13 6.16 -3.06 -0.02 3.11 16 23 S 0.20 2.39 22.08 -107.50 -2.37 0.02 16 24 C -0.20 -2.15 6.28 -35.86 -0.23 -2.38 16 25 C -0.08 -0.61 9.44 36.00 0.34 -0.27 16 26 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.05 0.45 7.40 -51.93 -0.38 0.06 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 29 H 0.07 0.58 8.11 -51.93 -0.42 0.16 16 30 H 0.07 0.50 7.45 -51.93 -0.39 0.11 16 31 H 0.15 1.99 8.06 -52.49 -0.42 1.56 16 32 H 0.39 6.07 7.59 -40.82 -0.31 5.76 16 33 H 0.07 1.30 6.21 -51.93 -0.32 0.98 16 34 H 0.06 1.00 8.12 -51.93 -0.42 0.58 16 35 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.06 0.99 8.05 -51.93 -0.42 0.58 16 37 H 0.08 1.37 8.05 -51.93 -0.42 0.95 16 38 H 0.07 1.88 6.94 -51.93 -0.36 1.52 16 39 H 0.03 0.64 8.07 -51.93 -0.42 0.22 16 40 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 41 H 0.03 0.72 7.80 -51.93 -0.41 0.31 16 42 H 0.03 0.84 6.66 -51.93 -0.35 0.50 16 43 H 0.07 0.46 8.11 -51.93 -0.42 0.04 16 44 H 0.08 0.53 7.40 -51.93 -0.38 0.14 16 45 H 0.08 0.47 7.92 -51.93 -0.41 0.06 16 LS Contribution 370.74 15.07 5.59 5.59 Total: -1.00 -32.75 370.74 -10.19 -42.94 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: -7.07 Total: 2.54 kcal Atomic # 6 Polarization: -1.44 SS G_CDS: -1.16 Total: -2.60 kcal Atomic # 7 Polarization: -55.06 SS G_CDS: -0.23 Total: -55.29 kcal Atomic # 8 Polarization: -10.74 SS G_CDS: 0.07 Total: -10.67 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.03 Total: 17.47 kcal Atomic # 16 Polarization: 2.39 SS G_CDS: -2.37 Total: 0.02 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.75 -10.19 -42.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046819216.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.265 kcal (2) G-P(sol) polarization free energy of solvation -32.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.940 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds