Wall clock time and date at job start Tue Mar 31 2020 13:12:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50704 * 109.46886 * 2 1 4 4 C 1.37464 * 122.44909 * 265.28957 * 3 2 1 5 5 C 1.36652 * 113.29517 * 180.18223 * 4 3 2 6 6 C 1.46587 * 125.45589 * 179.83980 * 5 4 3 7 7 O 1.21693 * 120.00439 * 359.72058 * 6 5 4 8 8 N 1.34777 * 119.99792 * 179.71414 * 6 5 4 9 9 C 1.46499 * 120.00081 * 179.72235 * 8 6 5 10 10 C 1.52996 * 110.64364 * 300.70764 * 9 8 6 11 11 C 1.55159 * 110.72176 * 177.56293 * 9 8 6 12 12 C 1.55389 * 101.36515 * 277.04544 * 11 9 8 13 13 N 1.47420 * 104.87701 * 323.01712 * 12 11 9 14 14 C 1.36934 * 125.64977 * 204.09745 * 13 12 11 15 15 H 1.08004 * 119.99983 * 169.97955 * 14 13 12 16 16 C 1.38814 * 120.00191 * 349.98255 * 14 13 12 17 17 N 1.31620 * 119.99657 * 350.42049 * 16 14 13 18 18 Si 1.86799 * 120.00069 * 170.42176 * 16 14 13 19 19 H 1.48498 * 109.47031 * 94.14125 * 18 16 14 20 20 H 1.48500 * 109.46946 * 214.13827 * 18 16 14 21 21 H 1.48493 * 109.47169 * 334.14081 * 18 16 14 22 22 C 1.47024 * 108.70288 * 24.13192 * 13 12 11 23 23 S 1.75828 * 109.08386 * 359.57572 * 5 4 3 24 24 C 1.33820 * 122.44507 * 85.00102 * 3 2 1 25 25 C 1.50694 * 124.52667 * 359.97438 * 24 3 2 26 26 H 1.08998 * 109.47102 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47593 * 300.00123 * 1 2 3 28 28 H 1.08998 * 109.47413 * 60.00196 * 1 2 3 29 29 H 1.08994 * 109.47165 * 240.00157 * 2 1 3 30 30 H 1.09006 * 109.47045 * 119.99748 * 2 1 3 31 31 H 1.07994 * 123.35712 * 0.02562 * 4 3 2 32 32 H 0.97008 * 119.99940 * 0.02562 * 8 6 5 33 33 H 1.09004 * 109.46935 * 59.29716 * 10 9 8 34 34 H 1.09001 * 109.47419 * 179.29564 * 10 9 8 35 35 H 1.09003 * 109.47000 * 299.29649 * 10 9 8 36 36 H 1.09001 * 111.00307 * 35.21520 * 11 9 8 37 37 H 1.08999 * 111.00249 * 159.07051 * 11 9 8 38 38 H 1.08994 * 110.34167 * 204.16231 * 12 11 9 39 39 H 1.08999 * 110.35122 * 81.87240 * 12 11 9 40 40 H 0.97002 * 119.99842 * 180.02562 * 17 16 14 41 41 H 1.08997 * 109.88492 * 239.52546 * 22 13 12 42 42 H 1.08993 * 110.01275 * 118.42941 * 22 13 12 43 43 H 1.09004 * 109.47370 * 179.97438 * 25 24 3 44 44 H 1.08998 * 109.46891 * 300.00236 * 25 24 3 45 45 H 1.09004 * 109.47147 * 59.99870 * 25 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3679 2.0845 -1.1561 5 6 2.8045 3.3611 -0.9391 6 6 3.2324 4.3017 -1.9788 7 8 3.2207 3.9634 -3.1477 8 7 3.6388 5.5413 -1.6401 9 6 4.0723 6.4793 -2.6786 10 6 5.2577 5.9090 -3.4599 11 6 4.4339 7.8552 -2.0593 12 6 3.0334 8.5195 -1.9502 13 7 2.3103 8.0785 -3.1567 14 6 1.2585 8.7327 -3.7406 15 1 0.8990 8.4199 -4.7099 16 6 0.6544 9.7978 -3.0868 17 7 0.9615 10.0608 -1.8343 18 14 -0.5944 10.8579 -3.9847 19 1 -1.9628 10.3503 -3.7106 20 1 -0.4832 12.2613 -3.5121 21 1 -0.3300 10.8048 -5.4449 22 6 2.9048 6.8194 -3.6289 23 16 2.7634 3.6973 0.7862 24 6 2.1788 2.1306 1.1250 25 6 1.8678 1.6152 2.5066 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 2.2963 1.6404 -2.1379 32 1 3.6484 5.8109 -0.7083 33 1 4.9681 4.9649 -3.9215 34 1 5.5562 6.6156 -4.2343 35 1 6.0932 5.7401 -2.7805 36 1 4.8900 7.7337 -1.0768 37 1 5.0855 8.4234 -2.7232 38 1 3.1288 9.6052 -1.9406 39 1 2.5194 8.1752 -1.0528 40 1 0.5391 10.8049 -1.3773 41 1 3.2784 6.9441 -4.6452 42 1 2.1613 6.0229 -3.6025 43 1 2.0757 2.3941 3.2403 44 1 0.8159 1.3351 2.5616 45 1 2.4874 0.7435 2.7172 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046819216.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:12:43 Heat of formation + Delta-G solvation = -11.489327 kcal Electronic energy + Delta-G solvation = -25280.898578 eV Core-core repulsion = 21810.351552 eV Total energy + Delta-G solvation = -3470.547026 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.37381 -39.82002 -38.71812 -35.75961 -34.08685 -33.52335 -32.44436 -31.69651 -30.39825 -28.04264 -27.58607 -25.52001 -24.85166 -24.33609 -22.37827 -21.70522 -20.64207 -19.69011 -18.97970 -18.75688 -17.39144 -16.99623 -16.70715 -16.20527 -16.01509 -15.67822 -15.33749 -15.04568 -14.89321 -14.51023 -14.33816 -14.13299 -14.07645 -13.63332 -13.59826 -13.33887 -13.31571 -13.11693 -12.94687 -12.87848 -12.74516 -12.59417 -12.39998 -12.17467 -12.06644 -11.97003 -11.82932 -11.76721 -11.67340 -11.56774 -10.88353 -10.70451 -10.17290 -9.61950 -9.35880 -8.88244 -7.91345 -5.25277 -0.50457 0.46478 0.89321 1.33731 1.43647 1.44699 1.55016 2.04050 2.20125 2.47134 3.27536 3.50874 3.66542 3.79867 3.84554 3.95635 4.09843 4.12379 4.16210 4.39251 4.51961 4.57709 4.62588 4.63901 4.69168 4.72695 4.77220 4.81743 4.87016 4.95109 4.96286 4.99371 5.05810 5.09712 5.14996 5.30683 5.32556 5.39881 5.45369 5.55077 5.55308 5.58509 5.69646 6.17650 6.45894 7.06042 7.12901 7.72391 8.39230 9.20372 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.014684 B = 0.003452 C = 0.003207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1906.352760 B = 8108.339349 C = 8729.558015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.058 4.058 3 C -0.134 4.134 4 C -0.050 4.050 5 C -0.300 4.300 6 C 0.588 3.412 7 O -0.564 6.564 8 N -0.701 5.701 9 C 0.169 3.831 10 C -0.141 4.141 11 C -0.129 4.129 12 C 0.179 3.821 13 N -0.621 5.621 14 C -0.251 4.251 15 H 0.068 0.932 16 C -0.056 4.056 17 N -0.942 5.942 18 Si 0.977 3.023 19 H -0.288 1.288 20 H -0.286 1.286 21 H -0.272 1.272 22 C 0.136 3.864 23 S 0.217 5.783 24 C -0.186 4.186 25 C -0.084 4.084 26 H 0.075 0.925 27 H 0.057 0.943 28 H 0.038 0.962 29 H 0.074 0.926 30 H 0.093 0.907 31 H 0.142 0.858 32 H 0.403 0.597 33 H 0.058 0.942 34 H 0.075 0.925 35 H 0.078 0.922 36 H 0.102 0.898 37 H 0.093 0.907 38 H 0.041 0.959 39 H 0.001 0.999 40 H 0.250 0.750 41 H 0.028 0.972 42 H 0.002 0.998 43 H 0.077 0.923 44 H 0.090 0.910 45 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.858 -18.934 11.213 23.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.097 4.097 3 C -0.145 4.145 4 C -0.084 4.084 5 C -0.420 4.420 6 C 0.376 3.624 7 O -0.446 6.446 8 N -0.352 5.352 9 C 0.083 3.917 10 C -0.200 4.200 11 C -0.167 4.167 12 C 0.054 3.946 13 N -0.348 5.348 14 C -0.380 4.380 15 H 0.086 0.914 16 C -0.250 4.250 17 N -0.590 5.590 18 Si 0.804 3.196 19 H -0.215 1.215 20 H -0.212 1.212 21 H -0.197 1.197 22 C 0.010 3.990 23 S 0.487 5.513 24 C -0.306 4.306 25 C -0.142 4.142 26 H 0.094 0.906 27 H 0.076 0.924 28 H 0.057 0.943 29 H 0.093 0.907 30 H 0.111 0.889 31 H 0.160 0.840 32 H 0.239 0.761 33 H 0.077 0.923 34 H 0.094 0.906 35 H 0.097 0.903 36 H 0.120 0.880 37 H 0.111 0.889 38 H 0.059 0.941 39 H 0.019 0.981 40 H 0.059 0.941 41 H 0.046 0.954 42 H 0.020 0.980 43 H 0.096 0.904 44 H 0.109 0.891 45 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 7.107 -17.674 11.325 22.162 hybrid contribution -1.468 -0.206 -1.235 1.930 sum 5.639 -17.881 10.089 21.291 Atomic orbital electron populations 1.21737 0.94608 1.02486 1.01599 1.20277 0.96034 0.89517 1.03910 1.18817 1.05314 0.99866 0.90552 1.20753 0.95464 0.91741 1.00430 1.24452 1.18681 1.00457 0.98372 1.17261 0.76324 0.81380 0.87463 1.90743 1.55881 1.78098 1.19837 1.45804 1.66510 1.12274 1.10572 1.21247 0.93560 0.89012 0.87919 1.21980 0.95794 1.01840 1.00340 1.23324 0.97897 0.93242 1.02263 1.21323 0.88311 0.97385 0.87596 1.44764 1.36226 1.22885 1.30898 1.19332 1.07799 1.10853 0.99980 0.91364 1.25590 1.01567 1.01181 0.96663 1.70122 1.47071 1.31463 1.10373 0.85108 0.78396 0.77935 0.78122 1.21493 1.21180 1.19712 1.21670 0.93847 0.87450 0.96010 1.82916 1.60139 1.11637 0.96621 1.24502 1.06018 0.98334 1.01789 1.20542 1.03666 1.02278 0.87754 0.90621 0.92390 0.94260 0.90733 0.88903 0.83985 0.76120 0.92341 0.90625 0.90272 0.87961 0.88865 0.94069 0.98082 0.94064 0.95394 0.97951 0.90420 0.89138 0.88308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 9.89 71.98 0.71 -1.41 16 2 C -0.06 -0.86 5.83 29.85 0.17 -0.68 16 3 C -0.13 -2.80 5.04 -21.05 -0.11 -2.90 16 4 C -0.05 -1.36 9.78 21.72 0.21 -1.14 16 5 C -0.30 -9.07 6.45 24.08 0.16 -8.91 16 6 C 0.59 21.50 7.00 86.42 0.60 22.11 16 7 O -0.56 -24.07 13.78 -4.33 -0.06 -24.13 16 8 N -0.70 -24.16 5.14 -421.55 -2.17 -26.33 16 9 C 0.17 6.19 0.80 4.79 0.00 6.19 16 10 C -0.14 -4.37 8.41 71.98 0.61 -3.76 16 11 C -0.13 -4.51 6.12 32.16 0.20 -4.32 16 12 C 0.18 8.71 5.41 87.03 0.47 9.18 16 13 N -0.62 -33.83 3.40 -691.04 -2.35 -36.18 16 14 C -0.25 -14.91 10.24 84.03 0.86 -14.05 16 15 H 0.07 4.02 7.85 -2.91 -0.02 4.00 16 16 C -0.06 -3.27 5.40 84.86 0.46 -2.82 16 17 N -0.94 -56.70 10.68 21.65 0.23 -56.47 16 18 Si 0.98 46.93 29.56 68.60 2.03 48.96 16 19 H -0.29 -13.69 7.11 99.48 0.71 -12.99 16 20 H -0.29 -13.45 7.11 99.48 0.71 -12.75 16 21 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 22 C 0.14 6.48 6.16 86.73 0.53 7.02 16 23 S 0.22 4.95 22.08 -56.49 -1.25 3.71 16 24 C -0.19 -3.55 6.28 24.68 0.15 -3.39 16 25 C -0.08 -0.95 9.44 71.23 0.67 -0.28 16 26 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 27 H 0.06 0.80 7.40 -2.39 -0.02 0.78 16 28 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.07 1.07 8.11 -2.39 -0.02 1.05 16 30 H 0.09 0.98 7.45 -2.38 -0.02 0.96 16 31 H 0.14 3.96 8.06 -2.91 -0.02 3.94 16 32 H 0.40 12.23 7.59 -92.70 -0.70 11.53 16 33 H 0.06 2.03 6.21 -2.38 -0.01 2.02 16 34 H 0.07 2.17 8.12 -2.39 -0.02 2.15 16 35 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 36 H 0.10 2.85 8.05 -2.39 -0.02 2.83 16 37 H 0.09 3.04 8.05 -2.39 -0.02 3.02 16 38 H 0.04 2.23 6.94 -2.39 -0.02 2.21 16 39 H 0.00 0.06 8.07 -2.39 -0.02 0.04 16 40 H 0.25 14.51 8.31 -92.71 -0.77 13.73 16 41 H 0.03 1.33 7.80 -2.39 -0.02 1.31 16 42 H 0.00 0.13 6.66 -2.39 -0.02 0.12 16 43 H 0.08 0.77 8.11 -2.39 -0.02 0.75 16 44 H 0.09 0.88 7.40 -2.39 -0.02 0.86 16 45 H 0.10 0.77 7.92 -2.38 -0.02 0.76 16 Total: -1.00 -74.14 370.74 2.44 -71.71 By element: Atomic # 1 Polarization: 17.63 SS G_CDS: 0.29 Total: 17.92 kcal Atomic # 6 Polarization: -4.89 SS G_CDS: 5.71 Total: 0.82 kcal Atomic # 7 Polarization: -114.69 SS G_CDS: -4.28 Total: -118.98 kcal Atomic # 8 Polarization: -24.07 SS G_CDS: -0.06 Total: -24.13 kcal Atomic # 14 Polarization: 46.93 SS G_CDS: 2.03 Total: 48.96 kcal Atomic # 16 Polarization: 4.95 SS G_CDS: -1.25 Total: 3.71 kcal Total: -74.14 2.44 -71.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046819216.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.218 kcal (2) G-P(sol) polarization free energy of solvation -74.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds