Wall clock time and date at job start Tue Mar 31 2020 13:09:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50704 * 109.47054 * 2 1 4 4 C 1.33817 * 124.52456 * 89.99308 * 3 2 1 5 5 C 1.37472 * 115.09788 * 179.75049 * 4 3 2 6 6 C 1.36651 * 113.29933 * 0.49412 * 5 4 3 7 7 C 1.46578 * 125.45844 * 179.80214 * 6 5 4 8 8 O 1.21702 * 120.00314 * 359.71912 * 7 6 5 9 9 N 1.34780 * 119.99771 * 179.72378 * 7 6 5 10 10 C 1.46505 * 119.99711 * 179.97438 * 9 7 6 11 11 H 1.08995 * 109.20294 * 35.63949 * 10 9 7 12 12 C 1.50129 * 109.20314 * 154.99696 * 10 9 7 13 13 C 1.52530 * 105.40930 * 218.02605 * 12 10 9 14 14 C 1.46234 * 114.27763 * 270.59118 * 13 12 10 15 15 N 1.50167 * 107.58702 * 58.38094 * 14 13 12 16 16 C 1.36941 * 120.53818 * 109.60240 * 15 14 13 17 17 H 1.07999 * 120.00220 * 156.71587 * 16 15 14 18 18 C 1.38811 * 119.99944 * 336.70842 * 16 15 14 19 19 N 1.31620 * 120.00265 * 340.43232 * 18 16 15 20 20 Si 1.86800 * 119.99849 * 160.42443 * 18 16 15 21 21 H 1.48503 * 109.46945 * 90.00414 * 20 18 16 22 22 H 1.48499 * 109.47326 * 210.00294 * 20 18 16 23 23 H 1.48499 * 109.47452 * 330.00426 * 20 18 16 24 24 C 1.43408 * 118.94429 * 289.70518 * 15 14 13 25 25 C 1.54843 * 109.20768 * 276.32054 * 10 9 7 26 26 S 1.70619 * 124.51735 * 270.02525 * 3 2 1 27 27 H 1.09003 * 109.47348 * 60.00553 * 1 2 3 28 28 H 1.09002 * 109.47120 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47692 * 300.00611 * 1 2 3 30 30 H 1.08991 * 109.47493 * 239.99809 * 2 1 3 31 31 H 1.08998 * 109.46672 * 119.99219 * 2 1 3 32 32 H 1.07998 * 122.45006 * 0.05067 * 4 3 2 33 33 H 1.07999 * 123.34866 * 180.30049 * 5 4 3 34 34 H 0.96998 * 120.00085 * 359.97438 * 9 7 6 35 35 H 1.08996 * 110.24757 * 99.06180 * 12 10 9 36 36 H 1.08994 * 110.25486 * 336.99730 * 12 10 9 37 37 H 1.09008 * 108.51919 * 149.35406 * 13 12 10 38 38 H 1.08993 * 108.40507 * 31.75140 * 13 12 10 39 39 H 1.09005 * 109.84763 * 177.91839 * 14 13 12 40 40 H 1.08998 * 109.85376 * 298.83943 * 14 13 12 41 41 H 0.96994 * 119.99906 * 179.97438 * 19 18 16 42 42 H 1.08991 * 108.12352 * 329.72545 * 24 15 14 43 43 H 1.08997 * 107.97295 * 213.06645 * 24 15 14 44 44 H 1.08994 * 109.36218 * 320.99540 * 25 10 9 45 45 H 1.09000 * 109.35375 * 80.72362 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2850 2.1359 1.1025 5 6 2.7422 3.4127 0.8773 6 6 2.8455 3.7237 -0.4493 7 6 3.2994 5.0090 -0.9885 8 8 3.6175 5.9079 -0.2323 9 7 3.3643 5.1952 -2.3218 10 6 3.8174 6.4799 -2.8607 11 1 4.5967 6.8848 -2.2151 12 6 4.3773 6.2680 -4.2375 13 6 5.5785 7.2030 -4.3348 14 6 5.2601 8.5415 -4.8301 15 7 4.2396 9.1373 -3.9034 16 6 4.5767 10.1685 -3.0677 17 1 3.8115 10.8325 -2.6934 18 6 5.9018 10.3603 -2.7015 19 7 6.7664 9.3749 -2.8192 20 14 6.4581 12.0171 -2.0418 21 1 6.3062 12.0380 -0.5647 22 1 7.8832 12.2378 -2.3960 23 1 5.6270 13.0925 -2.6401 24 6 2.9069 8.6078 -3.9058 25 6 2.6242 7.4661 -2.8976 26 16 2.3540 2.3326 -1.4058 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.8934 -0.5138 -0.8899 31 1 1.8932 -0.5137 0.8901 32 1 2.1448 1.7375 2.0964 33 1 2.9916 4.1024 1.6701 34 1 3.1111 4.4786 -2.9245 35 1 3.6343 6.5289 -4.9911 36 1 4.6943 5.2325 -4.3607 37 1 6.3143 6.7531 -5.0015 38 1 6.0226 7.2970 -3.3439 39 1 6.1592 9.1577 -4.8357 40 1 4.8506 8.4756 -5.8381 41 1 7.6924 9.5091 -2.5637 42 1 2.6911 8.2372 -4.9078 43 1 2.2193 9.4264 -3.6933 44 1 1.7233 6.9322 -3.1997 45 1 2.4764 7.8916 -1.9051 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052534516.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:09:26 Heat of formation + Delta-G solvation = 14.106591 kcal Electronic energy + Delta-G solvation = -25216.934132 eV Core-core repulsion = 21747.497028 eV Total energy + Delta-G solvation = -3469.437104 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.66926 -38.27018 -37.39488 -34.59452 -33.97097 -32.26660 -31.53734 -30.15533 -28.66976 -26.22754 -25.34076 -23.96269 -23.07915 -22.52567 -21.16572 -20.18639 -19.24530 -18.80458 -17.82277 -16.68097 -16.20085 -15.50650 -15.19474 -14.97415 -14.65076 -14.49980 -14.09628 -14.00568 -13.71493 -13.37420 -13.21278 -13.05090 -12.55176 -12.35558 -12.20421 -12.12221 -11.86492 -11.77661 -11.44163 -11.42297 -11.21291 -11.00598 -10.72970 -10.59681 -10.35501 -10.21298 -10.02242 -9.74322 -9.54602 -9.46162 -9.31352 -8.81930 -8.71993 -8.53206 -8.31471 -6.65606 -5.72708 -3.11195 0.44705 1.33530 1.75603 2.34392 3.44309 3.46608 3.49235 3.51428 3.53476 4.36655 4.58087 4.66592 4.89269 4.98621 5.09359 5.26852 5.37930 5.38989 5.44175 5.46430 5.59104 5.59915 5.74022 5.80499 5.87924 5.91423 6.04664 6.07628 6.26206 6.29848 6.32493 6.43695 6.51177 6.73115 6.89462 6.92459 6.96927 7.05865 7.16054 7.25192 7.62741 7.80257 7.84756 8.01514 8.49325 8.52295 9.25647 9.93144 10.45272 11.35153 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.023797 B = 0.002952 C = 0.002803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.344424 B = 9482.668887 C = 9986.576210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.054 4.054 3 C -0.199 4.199 4 C -0.150 4.150 5 C -0.061 4.061 6 C -0.253 4.253 7 C 0.580 3.420 8 O -0.519 6.519 9 N -0.723 5.723 10 C 0.156 3.844 11 H 0.105 0.895 12 C -0.122 4.122 13 C -0.129 4.129 14 C 0.165 3.835 15 N -0.588 5.588 16 C -0.248 4.248 17 H 0.067 0.933 18 C 0.003 3.997 19 N -0.900 5.900 20 Si 0.899 3.101 21 H -0.288 1.288 22 H -0.291 1.291 23 H -0.281 1.281 24 C 0.162 3.838 25 C -0.152 4.152 26 S 0.191 5.809 27 H 0.057 0.943 28 H 0.061 0.939 29 H 0.059 0.941 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.142 0.858 33 H 0.153 0.847 34 H 0.387 0.613 35 H 0.064 0.936 36 H 0.053 0.947 37 H 0.030 0.970 38 H 0.103 0.897 39 H 0.091 0.909 40 H 0.006 0.994 41 H 0.252 0.748 42 H 0.029 0.971 43 H 0.034 0.966 44 H 0.045 0.955 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.182 -19.979 1.123 22.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.093 4.093 3 C -0.319 4.319 4 C -0.181 4.181 5 C -0.093 4.093 6 C -0.374 4.374 7 C 0.365 3.635 8 O -0.396 6.396 9 N -0.373 5.373 10 C 0.054 3.946 11 H 0.123 0.877 12 C -0.160 4.160 13 C -0.168 4.168 14 C 0.042 3.958 15 N -0.309 5.309 16 C -0.378 4.378 17 H 0.085 0.915 18 C -0.195 4.195 19 N -0.545 5.545 20 Si 0.730 3.270 21 H -0.216 1.216 22 H -0.217 1.217 23 H -0.207 1.207 24 C 0.032 3.968 25 C -0.194 4.194 26 S 0.459 5.541 27 H 0.077 0.923 28 H 0.081 0.919 29 H 0.078 0.922 30 H 0.093 0.907 31 H 0.101 0.899 32 H 0.159 0.841 33 H 0.170 0.830 34 H 0.220 0.780 35 H 0.082 0.918 36 H 0.072 0.928 37 H 0.049 0.951 38 H 0.121 0.879 39 H 0.109 0.891 40 H 0.024 0.976 41 H 0.062 0.938 42 H 0.047 0.953 43 H 0.052 0.948 44 H 0.063 0.937 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -9.845 -19.547 0.114 21.886 hybrid contribution 0.298 0.538 1.919 2.015 sum -9.547 -19.009 2.033 21.368 Atomic orbital electron populations 1.21806 0.94127 1.02063 1.02673 1.20130 0.96317 0.89469 1.03409 1.24204 1.07834 1.02020 0.97819 1.19939 1.04525 0.94186 0.99457 1.20770 0.96935 0.96210 0.95408 1.24835 1.15166 0.99407 0.97966 1.16996 0.78225 0.85358 0.82960 1.90888 1.48329 1.42482 1.57915 1.46436 1.67895 1.17249 1.05720 1.21337 0.97554 0.80548 0.95187 0.87742 1.21375 0.99649 0.99060 0.95889 1.20934 0.94937 0.95857 1.05114 1.20161 0.93986 0.93216 0.88485 1.44283 1.06505 1.37648 1.42499 1.19183 0.92686 1.03195 1.22710 0.91531 1.24884 0.97551 0.97511 0.99565 1.69954 1.03593 1.29156 1.51797 0.86338 0.77608 0.84419 0.78675 1.21552 1.21700 1.20693 1.20357 0.88563 0.93159 0.94709 1.23320 0.95698 0.98047 1.02323 1.82881 1.60436 1.02843 1.07983 0.92341 0.91949 0.92171 0.90684 0.89904 0.84056 0.82972 0.77959 0.91772 0.92841 0.95107 0.87886 0.89114 0.97566 0.93788 0.95314 0.94778 0.93663 0.92421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 9.89 37.16 0.37 -0.53 16 2 C -0.05 -0.36 6.37 -27.88 -0.18 -0.54 16 3 C -0.20 -1.89 5.53 -35.86 -0.20 -2.09 16 4 C -0.15 -1.55 10.00 -41.41 -0.41 -1.97 16 5 C -0.06 -0.79 10.01 -40.43 -0.40 -1.20 16 6 C -0.25 -3.63 6.45 -36.79 -0.24 -3.87 16 7 C 0.58 10.54 7.73 -12.90 -0.10 10.44 16 8 O -0.52 -11.84 16.51 5.19 0.09 -11.76 16 9 N -0.72 -12.01 4.97 -55.59 -0.28 -12.29 16 10 C 0.16 3.07 2.22 -68.38 -0.15 2.92 16 11 H 0.10 2.62 6.26 -51.93 -0.33 2.30 16 12 C -0.12 -2.17 5.34 -28.40 -0.15 -2.32 16 13 C -0.13 -2.75 5.02 -30.19 -0.15 -2.90 16 14 C 0.16 3.81 5.24 -5.21 -0.03 3.78 16 15 N -0.59 -14.50 2.61 -175.10 -0.46 -14.96 16 16 C -0.25 -6.83 9.62 -15.06 -0.14 -6.97 16 17 H 0.07 1.84 7.88 -52.49 -0.41 1.42 16 18 C 0.00 0.08 4.91 -17.43 -0.09 -0.01 16 19 N -0.90 -25.34 9.43 55.49 0.52 -24.82 16 20 Si 0.90 22.09 29.60 -169.99 -5.03 17.06 16 21 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 22 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 23 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 24 C 0.16 3.43 5.17 -4.67 -0.02 3.41 16 25 C -0.15 -3.03 5.98 -24.75 -0.15 -3.18 16 26 S 0.19 1.99 22.10 -107.50 -2.38 -0.38 16 27 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 28 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.14 1.14 8.06 -52.49 -0.42 0.72 16 33 H 0.15 2.01 8.06 -52.49 -0.42 1.58 16 34 H 0.39 5.18 7.59 -40.82 -0.31 4.87 16 35 H 0.06 1.09 6.29 -51.93 -0.33 0.76 16 36 H 0.05 0.83 7.85 -51.93 -0.41 0.42 16 37 H 0.03 0.60 8.14 -51.92 -0.42 0.17 16 38 H 0.10 2.60 5.29 -51.93 -0.27 2.32 16 39 H 0.09 2.35 6.05 -51.93 -0.31 2.03 16 40 H 0.01 0.13 8.13 -51.93 -0.42 -0.29 16 41 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 42 H 0.03 0.55 6.89 -51.93 -0.36 0.19 16 43 H 0.03 0.73 7.98 -51.93 -0.41 0.31 16 44 H 0.04 0.78 8.12 -51.93 -0.42 0.36 16 45 H 0.06 1.31 8.14 -51.93 -0.42 0.88 16 LS Contribution 365.77 15.07 5.51 5.51 Total: -1.00 -31.09 365.77 -11.00 -42.09 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: -6.93 Total: 4.57 kcal Atomic # 6 Polarization: -2.98 SS G_CDS: -2.05 Total: -5.03 kcal Atomic # 7 Polarization: -51.86 SS G_CDS: -0.21 Total: -52.07 kcal Atomic # 8 Polarization: -11.84 SS G_CDS: 0.09 Total: -11.76 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.03 Total: 17.06 kcal Atomic # 16 Polarization: 1.99 SS G_CDS: -2.38 Total: -0.38 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -31.09 -11.00 -42.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052534516.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.194 kcal (2) G-P(sol) polarization free energy of solvation -31.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.087 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds