Wall clock time and date at job start Tue Mar 31 2020 13:09:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50704 * 109.47054 * 2 1 4 4 C 1.33817 * 124.52456 * 89.99308 * 3 2 1 5 5 C 1.37472 * 115.09788 * 179.75049 * 4 3 2 6 6 C 1.36651 * 113.29933 * 0.49412 * 5 4 3 7 7 C 1.46578 * 125.45844 * 179.80214 * 6 5 4 8 8 O 1.21702 * 120.00314 * 359.71912 * 7 6 5 9 9 N 1.34780 * 119.99771 * 179.72378 * 7 6 5 10 10 C 1.46505 * 119.99711 * 179.97438 * 9 7 6 11 11 H 1.08995 * 109.20294 * 35.63949 * 10 9 7 12 12 C 1.50129 * 109.20314 * 154.99696 * 10 9 7 13 13 C 1.52530 * 105.40930 * 218.02605 * 12 10 9 14 14 C 1.46234 * 114.27763 * 270.59118 * 13 12 10 15 15 N 1.50167 * 107.58702 * 58.38094 * 14 13 12 16 16 C 1.36941 * 120.53818 * 109.60240 * 15 14 13 17 17 H 1.07999 * 120.00220 * 156.71587 * 16 15 14 18 18 C 1.38811 * 119.99944 * 336.70842 * 16 15 14 19 19 N 1.31620 * 120.00265 * 340.43232 * 18 16 15 20 20 Si 1.86800 * 119.99849 * 160.42443 * 18 16 15 21 21 H 1.48503 * 109.46945 * 90.00414 * 20 18 16 22 22 H 1.48499 * 109.47326 * 210.00294 * 20 18 16 23 23 H 1.48499 * 109.47452 * 330.00426 * 20 18 16 24 24 C 1.43408 * 118.94429 * 289.70518 * 15 14 13 25 25 C 1.54843 * 109.20768 * 276.32054 * 10 9 7 26 26 S 1.70619 * 124.51735 * 270.02525 * 3 2 1 27 27 H 1.09003 * 109.47348 * 60.00553 * 1 2 3 28 28 H 1.09002 * 109.47120 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47692 * 300.00611 * 1 2 3 30 30 H 1.08991 * 109.47493 * 239.99809 * 2 1 3 31 31 H 1.08998 * 109.46672 * 119.99219 * 2 1 3 32 32 H 1.07998 * 122.45006 * 0.05067 * 4 3 2 33 33 H 1.07999 * 123.34866 * 180.30049 * 5 4 3 34 34 H 0.96998 * 120.00085 * 359.97438 * 9 7 6 35 35 H 1.08996 * 110.24757 * 99.06180 * 12 10 9 36 36 H 1.08994 * 110.25486 * 336.99730 * 12 10 9 37 37 H 1.09008 * 108.51919 * 149.35406 * 13 12 10 38 38 H 1.08993 * 108.40507 * 31.75140 * 13 12 10 39 39 H 1.09005 * 109.84763 * 177.91839 * 14 13 12 40 40 H 1.08998 * 109.85376 * 298.83943 * 14 13 12 41 41 H 0.96994 * 119.99906 * 179.97438 * 19 18 16 42 42 H 1.08991 * 108.12352 * 329.72545 * 24 15 14 43 43 H 1.08997 * 107.97295 * 213.06645 * 24 15 14 44 44 H 1.08994 * 109.36218 * 320.99540 * 25 10 9 45 45 H 1.09000 * 109.35375 * 80.72362 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2850 2.1359 1.1025 5 6 2.7422 3.4127 0.8773 6 6 2.8455 3.7237 -0.4493 7 6 3.2994 5.0090 -0.9885 8 8 3.6175 5.9079 -0.2323 9 7 3.3643 5.1952 -2.3218 10 6 3.8174 6.4799 -2.8607 11 1 4.5967 6.8848 -2.2151 12 6 4.3773 6.2680 -4.2375 13 6 5.5785 7.2030 -4.3348 14 6 5.2601 8.5415 -4.8301 15 7 4.2396 9.1373 -3.9034 16 6 4.5767 10.1685 -3.0677 17 1 3.8115 10.8325 -2.6934 18 6 5.9018 10.3603 -2.7015 19 7 6.7664 9.3749 -2.8192 20 14 6.4581 12.0171 -2.0418 21 1 6.3062 12.0380 -0.5647 22 1 7.8832 12.2378 -2.3960 23 1 5.6270 13.0925 -2.6401 24 6 2.9069 8.6078 -3.9058 25 6 2.6242 7.4661 -2.8976 26 16 2.3540 2.3326 -1.4058 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.8934 -0.5138 -0.8899 31 1 1.8932 -0.5137 0.8901 32 1 2.1448 1.7375 2.0964 33 1 2.9916 4.1024 1.6701 34 1 3.1111 4.4786 -2.9245 35 1 3.6343 6.5289 -4.9911 36 1 4.6943 5.2325 -4.3607 37 1 6.3143 6.7531 -5.0015 38 1 6.0226 7.2970 -3.3439 39 1 6.1592 9.1577 -4.8357 40 1 4.8506 8.4756 -5.8381 41 1 7.6924 9.5091 -2.5637 42 1 2.6911 8.2372 -4.9078 43 1 2.2193 9.4264 -3.6933 44 1 1.7233 6.9322 -3.1997 45 1 2.4764 7.8916 -1.9051 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001052534516.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:09:25 Heat of formation + Delta-G solvation = -4.234093 kcal Electronic energy + Delta-G solvation = -25217.729444 eV Core-core repulsion = 21747.497028 eV Total energy + Delta-G solvation = -3470.232416 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.11693 -39.53520 -38.71897 -36.29243 -34.69206 -34.03518 -33.32892 -31.85297 -29.68302 -27.97054 -26.36892 -25.69341 -24.65990 -23.24120 -22.51551 -21.81394 -20.88206 -20.05398 -18.93266 -18.56052 -17.33897 -16.94886 -16.82719 -16.28054 -16.19741 -15.63229 -15.57280 -15.19888 -15.04534 -14.91153 -14.41064 -14.15011 -13.95674 -13.78619 -13.51912 -13.30447 -13.23204 -13.14705 -12.84095 -12.69077 -12.43462 -12.38734 -12.15809 -12.08890 -11.94135 -11.78965 -11.69411 -11.59420 -11.21103 -11.13336 -11.06520 -10.45194 -10.11805 -9.64717 -9.53533 -8.63895 -7.82826 -5.22659 -0.53387 0.43239 0.87038 1.37665 1.44539 1.46554 1.55270 2.13746 2.16706 2.54199 3.30229 3.62362 3.69185 3.80311 4.00704 4.11906 4.14900 4.30045 4.33901 4.41971 4.46909 4.48281 4.62186 4.71890 4.80403 4.85714 4.88118 4.91665 5.04256 5.06058 5.13180 5.17521 5.19496 5.27047 5.28733 5.35656 5.39148 5.42425 5.50191 5.62509 5.67356 5.77930 6.19978 6.43078 6.49284 7.17416 7.19785 7.93445 8.40858 9.21360 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.023797 B = 0.002952 C = 0.002803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.344424 B = 9482.668887 C = 9986.576210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.056 4.056 3 C -0.182 4.182 4 C -0.162 4.162 5 C -0.060 4.060 6 C -0.302 4.302 7 C 0.577 3.423 8 O -0.583 6.583 9 N -0.709 5.709 10 C 0.168 3.832 11 H 0.042 0.958 12 C -0.107 4.107 13 C -0.123 4.123 14 C 0.167 3.833 15 N -0.602 5.602 16 C -0.261 4.261 17 H 0.057 0.943 18 C -0.045 4.045 19 N -0.915 5.915 20 Si 0.956 3.044 21 H -0.296 1.296 22 H -0.289 1.289 23 H -0.273 1.273 24 C 0.157 3.843 25 C -0.141 4.141 26 S 0.245 5.755 27 H 0.053 0.947 28 H 0.080 0.920 29 H 0.055 0.945 30 H 0.089 0.911 31 H 0.100 0.900 32 H 0.166 0.834 33 H 0.138 0.862 34 H 0.407 0.593 35 H 0.087 0.913 36 H 0.084 0.916 37 H 0.048 0.952 38 H 0.057 0.943 39 H 0.056 0.944 40 H 0.035 0.965 41 H 0.246 0.754 42 H 0.062 0.938 43 H 0.028 0.972 44 H 0.080 0.920 45 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.987 -23.283 -0.387 26.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.095 4.095 3 C -0.302 4.302 4 C -0.192 4.192 5 C -0.094 4.094 6 C -0.422 4.422 7 C 0.364 3.636 8 O -0.465 6.465 9 N -0.360 5.360 10 C 0.064 3.936 11 H 0.061 0.939 12 C -0.145 4.145 13 C -0.163 4.163 14 C 0.044 3.956 15 N -0.324 5.324 16 C -0.392 4.392 17 H 0.075 0.925 18 C -0.241 4.241 19 N -0.561 5.561 20 Si 0.785 3.215 21 H -0.224 1.224 22 H -0.215 1.215 23 H -0.198 1.198 24 C 0.028 3.972 25 C -0.183 4.183 26 S 0.513 5.487 27 H 0.072 0.928 28 H 0.099 0.901 29 H 0.074 0.926 30 H 0.108 0.892 31 H 0.118 0.882 32 H 0.183 0.817 33 H 0.155 0.845 34 H 0.244 0.756 35 H 0.106 0.894 36 H 0.103 0.897 37 H 0.067 0.933 38 H 0.076 0.924 39 H 0.075 0.925 40 H 0.053 0.947 41 H 0.055 0.945 42 H 0.080 0.920 43 H 0.046 0.954 44 H 0.098 0.902 45 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges -11.680 -22.889 -1.447 25.738 hybrid contribution 0.785 1.435 2.416 2.917 sum -10.895 -21.454 0.968 24.082 Atomic orbital electron populations 1.21817 0.93407 1.03184 1.02258 1.20325 0.96765 0.87387 1.05020 1.24745 1.05143 1.03131 0.97160 1.20063 1.04988 0.93002 1.01097 1.20925 0.96346 0.97300 0.94845 1.24512 1.18689 0.99675 0.99351 1.17551 0.76987 0.86179 0.82842 1.90848 1.51228 1.45087 1.59304 1.46167 1.67323 1.16776 1.05770 1.20899 0.95801 0.81623 0.95260 0.93930 1.21291 0.98470 0.99972 0.94744 1.20745 0.96768 0.96021 1.02722 1.20129 0.92586 0.93335 0.89574 1.44463 1.07943 1.37682 1.42344 1.19365 0.92671 1.04136 1.22983 0.92482 1.25535 0.97843 1.00142 1.00583 1.70137 1.03216 1.30133 1.52638 0.85463 0.77170 0.81448 0.77428 1.22399 1.21537 1.19766 1.20494 0.86737 0.93370 0.96582 1.23195 0.97320 0.97979 0.99849 1.82575 1.58963 1.00070 1.07064 0.92796 0.90139 0.92613 0.89227 0.88203 0.81668 0.84466 0.75585 0.89423 0.89710 0.93328 0.92411 0.92527 0.94652 0.94508 0.91971 0.95390 0.90152 0.96459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.89 71.98 0.71 -0.53 16 2 C -0.06 -0.51 6.37 29.85 0.19 -0.32 16 3 C -0.18 -2.88 5.53 24.68 0.14 -2.75 16 4 C -0.16 -3.03 10.00 21.08 0.21 -2.82 16 5 C -0.06 -1.58 10.01 21.72 0.22 -1.36 16 6 C -0.30 -8.66 6.45 24.08 0.16 -8.50 16 7 C 0.58 21.79 7.73 86.42 0.67 22.45 16 8 O -0.58 -28.77 16.51 -4.36 -0.07 -28.84 16 9 N -0.71 -23.40 4.97 -448.00 -2.23 -25.62 16 10 C 0.17 6.69 2.22 44.69 0.10 6.79 16 11 H 0.04 2.28 6.26 -2.39 -0.01 2.26 16 12 C -0.11 -3.60 5.34 29.51 0.16 -3.44 16 13 C -0.12 -5.22 5.02 28.36 0.14 -5.08 16 14 C 0.17 7.70 5.24 83.58 0.44 8.14 16 15 N -0.60 -30.16 2.61 -707.91 -1.85 -32.00 16 16 C -0.26 -14.87 9.62 84.03 0.81 -14.06 16 17 H 0.06 3.28 7.88 -2.91 -0.02 3.26 16 18 C -0.05 -2.59 4.91 84.86 0.42 -2.18 16 19 N -0.92 -53.97 9.43 21.65 0.20 -53.76 16 20 Si 0.96 47.06 29.60 68.60 2.03 49.09 16 21 H -0.30 -14.88 7.11 99.48 0.71 -14.17 16 22 H -0.29 -14.05 7.11 99.48 0.71 -13.34 16 23 H -0.27 -12.91 7.11 99.48 0.71 -12.20 16 24 C 0.16 6.56 5.17 87.60 0.45 7.01 16 25 C -0.14 -5.68 5.98 31.87 0.19 -5.49 16 26 S 0.24 4.46 22.10 -56.49 -1.25 3.21 16 27 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 28 H 0.08 0.42 8.14 -2.39 -0.02 0.40 16 29 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.17 2.23 8.06 -2.91 -0.02 2.21 16 33 H 0.14 3.90 8.06 -2.91 -0.02 3.88 16 34 H 0.41 9.98 7.59 -92.71 -0.70 9.28 16 35 H 0.09 2.59 6.29 -2.39 -0.02 2.58 16 36 H 0.08 2.34 7.85 -2.39 -0.02 2.32 16 37 H 0.05 1.84 8.14 -2.38 -0.02 1.82 16 38 H 0.06 3.04 5.29 -2.39 -0.01 3.03 16 39 H 0.06 3.00 6.05 -2.38 -0.01 2.98 16 40 H 0.04 1.42 8.13 -2.39 -0.02 1.40 16 41 H 0.25 14.25 8.31 -92.71 -0.77 13.48 16 42 H 0.06 2.19 6.89 -2.39 -0.02 2.18 16 43 H 0.03 1.19 7.98 -2.39 -0.02 1.17 16 44 H 0.08 2.63 8.12 -2.39 -0.02 2.62 16 45 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 Total: -1.00 -74.01 365.77 2.13 -71.89 By element: Atomic # 1 Polarization: 17.88 SS G_CDS: 0.29 Total: 18.17 kcal Atomic # 6 Polarization: -7.13 SS G_CDS: 5.00 Total: -2.14 kcal Atomic # 7 Polarization: -107.52 SS G_CDS: -3.87 Total: -111.39 kcal Atomic # 8 Polarization: -28.77 SS G_CDS: -0.07 Total: -28.84 kcal Atomic # 14 Polarization: 47.06 SS G_CDS: 2.03 Total: 49.09 kcal Atomic # 16 Polarization: 4.46 SS G_CDS: -1.25 Total: 3.21 kcal Total: -74.01 2.13 -71.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052534516.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.652 kcal (2) G-P(sol) polarization free energy of solvation -74.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds