Wall clock time and date at job start Tue Mar 31 2020 13:17:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50703 * 109.46938 * 2 1 4 4 C 1.37481 * 123.35281 * 265.21614 * 3 2 1 5 5 C 1.33813 * 115.09682 * 180.29455 * 4 3 2 6 6 S 1.70610 * 110.95895 * 359.72964 * 5 4 3 7 7 C 1.36640 * 123.35115 * 85.00088 * 3 2 1 8 8 C 1.46586 * 125.46088 * 359.97438 * 7 3 2 9 9 O 1.21697 * 119.99604 * 359.72492 * 8 7 3 10 10 N 1.34771 * 120.00163 * 179.71760 * 8 7 3 11 11 C 1.46504 * 119.99889 * 180.02562 * 10 8 7 12 12 H 1.09001 * 109.50784 * 325.05287 * 11 10 8 13 13 C 1.52565 * 109.48848 * 205.00273 * 11 10 8 14 14 C 1.47100 * 114.32807 * 155.01798 * 13 11 10 15 15 C 1.54867 * 110.31821 * 62.80096 * 14 13 11 16 16 N 1.44576 * 109.57815 * 288.74676 * 15 14 13 17 17 C 1.36936 * 118.64501 * 270.71540 * 16 15 14 18 18 H 1.07998 * 119.99825 * 26.54553 * 17 16 15 19 19 C 1.38816 * 120.00147 * 206.54702 * 17 16 15 20 20 N 1.31620 * 120.00010 * 15.71271 * 19 17 16 21 21 Si 1.86801 * 120.00173 * 195.70570 * 19 17 16 22 22 H 1.48503 * 109.46821 * 60.00367 * 21 19 17 23 23 H 1.48503 * 109.47046 * 179.97438 * 21 19 17 24 24 H 1.48493 * 109.47266 * 300.00250 * 21 19 17 25 25 C 1.47583 * 122.73176 * 90.76402 * 16 15 14 26 26 C 1.50880 * 109.49202 * 85.11541 * 11 10 8 27 27 H 1.09000 * 109.46823 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47314 * 299.99971 * 1 2 3 29 29 H 1.09001 * 109.47127 * 60.00267 * 1 2 3 30 30 H 1.09008 * 109.47351 * 240.00268 * 2 1 3 31 31 H 1.08995 * 109.47446 * 120.00012 * 2 1 3 32 32 H 1.08000 * 122.44701 * 0.04598 * 4 3 2 33 33 H 1.08005 * 124.51764 * 179.70796 * 5 4 3 34 34 H 0.97000 * 120.00578 * 0.02562 * 10 8 7 35 35 H 1.09005 * 108.51756 * 33.76445 * 13 11 10 36 36 H 1.09000 * 108.51564 * 276.27295 * 13 11 10 37 37 H 1.09002 * 109.32725 * 302.54460 * 14 13 11 38 38 H 1.08994 * 109.18922 * 182.97386 * 14 13 11 39 39 H 1.08998 * 109.45302 * 48.77358 * 15 14 13 40 40 H 1.09000 * 109.44925 * 168.71914 * 15 14 13 41 41 H 0.97000 * 120.00099 * 179.97438 * 20 19 17 42 42 H 1.09004 * 108.94507 * 197.15215 * 25 16 15 43 43 H 1.08999 * 108.89440 * 78.46204 * 25 16 15 44 44 H 1.08996 * 109.36492 * 332.04379 * 26 11 10 45 45 H 1.08996 * 109.36653 * 91.78792 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.3745 2.1016 -1.1444 5 6 2.8066 3.3534 -0.9524 6 16 2.7997 3.7538 0.7060 7 6 2.1889 2.1623 1.1370 8 6 1.8995 1.7026 2.4986 9 8 1.4781 0.5760 2.6837 10 7 2.1002 2.5276 3.5452 11 6 1.8115 2.0679 4.9060 12 1 0.9472 1.4040 4.8903 13 6 1.5135 3.2701 5.7968 14 6 0.6757 2.9646 6.9667 15 6 1.4009 1.9653 7.9014 16 7 1.4362 0.6599 7.2810 17 6 0.3966 -0.2025 7.5067 18 1 -0.5830 0.1838 7.7464 19 6 0.6021 -1.5731 7.4275 20 7 1.8258 -2.0572 7.4454 21 14 -0.8584 -2.7303 7.2958 22 1 -1.6329 -2.4122 6.0693 23 1 -0.3741 -4.1324 7.2251 24 1 -1.7290 -2.5663 8.4875 25 6 2.5465 0.2174 6.4153 26 6 3.0067 1.3256 5.4509 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5138 -0.8901 31 1 1.8933 -0.5138 0.8899 32 1 2.3037 1.6570 -2.1261 33 1 3.1185 4.0210 -1.7420 34 1 2.4358 3.4256 3.3977 35 1 1.0085 4.0281 5.1980 36 1 2.4590 3.6842 6.1470 37 1 -0.2654 2.5279 6.6323 38 1 0.4722 3.8861 7.5120 39 1 2.4195 2.3096 8.0806 40 1 0.8671 1.9023 8.8496 41 1 1.9694 -3.0150 7.3905 42 1 2.2200 -0.6447 5.8338 43 1 3.3875 -0.0773 7.0429 44 1 3.5619 0.8793 4.6259 45 1 3.6520 2.0226 5.9856 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052955730.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:17:12 Heat of formation + Delta-G solvation = 9.813284 kcal Electronic energy + Delta-G solvation = -25903.225983 eV Core-core repulsion = 22433.602707 eV Total energy + Delta-G solvation = -3469.623276 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.92286 -38.44924 -37.23295 -34.63075 -32.91042 -32.66003 -31.10398 -30.54154 -29.07927 -26.10286 -25.29897 -23.84639 -23.22175 -22.40476 -21.20982 -20.22766 -19.19019 -18.57591 -18.12458 -16.55208 -16.02645 -15.72123 -15.19251 -14.99769 -14.64945 -14.22194 -14.05670 -13.78610 -13.59022 -13.41769 -13.13720 -12.99118 -12.81279 -12.44405 -12.36040 -11.92598 -11.87932 -11.56536 -11.51350 -11.05660 -11.01580 -10.81566 -10.72594 -10.69865 -10.35591 -10.17838 -10.02457 -9.89395 -9.65450 -9.53557 -9.49372 -8.96809 -8.65010 -8.58070 -8.27139 -6.57530 -5.67968 -3.11744 0.44702 1.36611 1.74810 2.31442 3.38747 3.41812 3.46758 3.52545 3.55302 4.60235 4.68400 4.89109 5.07987 5.12571 5.21009 5.32834 5.36324 5.52668 5.53586 5.60730 5.65708 5.74822 5.78972 5.92632 6.04347 6.10776 6.15326 6.21045 6.24640 6.32035 6.43479 6.46592 6.52073 6.54101 6.64599 6.73311 6.81958 6.89516 7.04441 7.10907 7.52464 7.76126 7.81384 7.93158 8.47977 8.57797 9.34121 10.01236 10.45519 11.39558 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.014488 B = 0.004139 C = 0.003469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1932.199208 B = 6764.107796 C = 8068.753121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.073 4.073 3 C -0.023 4.023 4 C -0.143 4.143 5 C -0.234 4.234 6 S 0.183 5.817 7 C -0.258 4.258 8 C 0.582 3.418 9 O -0.507 6.507 10 N -0.724 5.724 11 C 0.156 3.844 12 H 0.105 0.895 13 C -0.107 4.107 14 C -0.145 4.145 15 C 0.157 3.843 16 N -0.591 5.591 17 C -0.261 4.261 18 H 0.064 0.936 19 C 0.009 3.991 20 N -0.903 5.903 21 Si 0.899 3.101 22 H -0.283 1.283 23 H -0.291 1.291 24 H -0.284 1.284 25 C 0.183 3.817 26 C -0.147 4.147 27 H 0.058 0.942 28 H 0.061 0.939 29 H 0.046 0.954 30 H 0.066 0.934 31 H 0.098 0.902 32 H 0.143 0.857 33 H 0.166 0.834 34 H 0.387 0.613 35 H 0.047 0.953 36 H 0.053 0.947 37 H 0.062 0.938 38 H 0.051 0.949 39 H 0.032 0.968 40 H 0.046 0.954 41 H 0.253 0.747 42 H 0.079 0.921 43 H 0.025 0.975 44 H 0.056 0.944 45 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.062 13.504 -15.779 20.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.112 4.112 3 C -0.038 4.038 4 C -0.175 4.175 5 C -0.371 4.371 6 S 0.451 5.549 7 C -0.379 4.379 8 C 0.367 3.633 9 O -0.384 6.384 10 N -0.375 5.375 11 C 0.053 3.947 12 H 0.123 0.877 13 C -0.145 4.145 14 C -0.186 4.186 15 C 0.028 3.972 16 N -0.312 5.312 17 C -0.390 4.390 18 H 0.082 0.918 19 C -0.190 4.190 20 N -0.547 5.547 21 Si 0.729 3.271 22 H -0.210 1.210 23 H -0.217 1.217 24 H -0.210 1.210 25 C 0.058 3.942 26 C -0.187 4.187 27 H 0.078 0.922 28 H 0.080 0.920 29 H 0.065 0.935 30 H 0.085 0.915 31 H 0.116 0.884 32 H 0.160 0.840 33 H 0.184 0.816 34 H 0.220 0.780 35 H 0.065 0.935 36 H 0.072 0.928 37 H 0.081 0.919 38 H 0.070 0.930 39 H 0.050 0.950 40 H 0.064 0.936 41 H 0.063 0.937 42 H 0.097 0.903 43 H 0.043 0.957 44 H 0.074 0.926 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 3.248 13.838 -14.793 20.515 hybrid contribution -0.780 -1.240 -1.289 1.951 sum 2.469 12.599 -16.082 20.578 Atomic orbital electron populations 1.21596 0.94248 1.01931 1.01623 1.20432 0.96603 0.90456 1.03716 1.19559 0.96241 0.97582 0.90408 1.19930 1.03708 0.94203 0.99669 1.25176 1.08798 1.01464 1.01693 1.82908 1.60574 1.12488 0.98929 1.24636 1.16026 0.99147 0.98059 1.16904 0.78466 0.85426 0.82527 1.90878 1.44444 1.18389 1.84697 1.46234 1.67586 1.16272 1.07399 1.20563 1.00245 0.95979 0.77892 0.87679 1.20579 1.00312 0.96488 0.97121 1.21452 1.00191 0.99792 0.97159 1.20691 0.96692 0.86074 0.93702 1.43662 1.23051 1.11735 1.52777 1.19127 0.88992 0.86979 1.43926 0.91842 1.24993 0.96015 0.97246 1.00761 1.70043 1.18905 1.12031 1.53733 0.86430 0.82435 0.80128 0.78135 1.20955 1.21693 1.21021 1.20939 0.89837 0.93087 0.90344 1.22456 0.96648 0.99818 0.99798 0.92248 0.92006 0.93523 0.91501 0.88381 0.83962 0.81615 0.77991 0.93451 0.92787 0.91889 0.93017 0.95013 0.93584 0.93695 0.90313 0.95690 0.92573 0.93586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.78 9.77 37.16 0.36 -1.41 16 2 C -0.07 -0.96 5.50 -27.88 -0.15 -1.12 16 3 C -0.02 -0.30 5.16 -105.47 -0.54 -0.84 16 4 C -0.14 -1.46 9.96 -41.41 -0.41 -1.87 16 5 C -0.23 -2.09 10.92 29.18 0.32 -1.77 16 6 S 0.18 1.80 22.16 -107.50 -2.38 -0.58 16 7 C -0.26 -3.56 6.45 -36.79 -0.24 -3.80 16 8 C 0.58 9.87 7.60 -12.90 -0.10 9.77 16 9 O -0.51 -10.59 13.37 5.19 0.07 -10.52 16 10 N -0.72 -11.19 4.93 -56.40 -0.28 -11.46 16 11 C 0.16 2.84 2.06 -69.21 -0.14 2.70 16 12 H 0.11 2.39 6.92 -51.93 -0.36 2.03 16 13 C -0.11 -1.68 4.69 -29.79 -0.14 -1.82 16 14 C -0.14 -2.51 5.74 -28.58 -0.16 -2.67 16 15 C 0.16 3.23 5.66 -4.08 -0.02 3.20 16 16 N -0.59 -14.71 2.27 -172.11 -0.39 -15.10 16 17 C -0.26 -7.22 9.44 -15.06 -0.14 -7.37 16 18 H 0.06 1.73 7.88 -52.49 -0.41 1.32 16 19 C 0.01 0.24 4.87 -17.43 -0.08 0.16 16 20 N -0.90 -26.81 11.01 55.49 0.61 -26.20 16 21 Si 0.90 22.56 29.58 -169.99 -5.03 17.53 16 22 H -0.28 -7.16 7.11 56.52 0.40 -6.75 16 23 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 24 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 25 C 0.18 4.52 4.67 -2.96 -0.01 4.50 16 26 C -0.15 -2.90 5.39 -27.30 -0.15 -3.05 16 27 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.06 0.95 7.58 -51.93 -0.39 0.56 16 29 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.72 8.12 -51.92 -0.42 0.30 16 31 H 0.10 1.58 6.33 -51.93 -0.33 1.25 16 32 H 0.14 1.14 8.06 -52.49 -0.42 0.71 16 33 H 0.17 1.01 8.06 -52.48 -0.42 0.58 16 34 H 0.39 4.79 7.71 -40.82 -0.31 4.47 16 35 H 0.05 0.65 8.04 -51.93 -0.42 0.23 16 36 H 0.05 0.78 7.36 -51.93 -0.38 0.40 16 37 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 38 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.03 0.62 8.07 -51.93 -0.42 0.20 16 40 H 0.05 0.96 7.99 -51.93 -0.41 0.55 16 41 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 42 H 0.08 2.24 6.33 -51.93 -0.33 1.91 16 43 H 0.03 0.66 8.03 -51.93 -0.42 0.25 16 44 H 0.06 1.12 7.85 -51.93 -0.41 0.71 16 45 H 0.05 0.83 7.32 -51.93 -0.38 0.45 16 LS Contribution 365.03 15.07 5.50 5.50 Total: -1.00 -31.45 365.03 -10.59 -42.04 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: -7.07 Total: 4.18 kcal Atomic # 6 Polarization: -3.77 SS G_CDS: -1.62 Total: -5.39 kcal Atomic # 7 Polarization: -52.71 SS G_CDS: -0.06 Total: -52.77 kcal Atomic # 8 Polarization: -10.59 SS G_CDS: 0.07 Total: -10.52 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -5.03 Total: 17.53 kcal Atomic # 16 Polarization: 1.80 SS G_CDS: -2.38 Total: -0.58 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -31.45 -10.59 -42.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052955730.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.856 kcal (2) G-P(sol) polarization free energy of solvation -31.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.043 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds