Wall clock time and date at job start Tue Mar 31 2020 13:17:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50703 * 109.46938 * 2 1 4 4 C 1.37481 * 123.35281 * 265.21614 * 3 2 1 5 5 C 1.33813 * 115.09682 * 180.29455 * 4 3 2 6 6 S 1.70610 * 110.95895 * 359.72964 * 5 4 3 7 7 C 1.36640 * 123.35115 * 85.00088 * 3 2 1 8 8 C 1.46586 * 125.46088 * 359.97438 * 7 3 2 9 9 O 1.21697 * 119.99604 * 359.72492 * 8 7 3 10 10 N 1.34771 * 120.00163 * 179.71760 * 8 7 3 11 11 C 1.46504 * 119.99889 * 180.02562 * 10 8 7 12 12 H 1.09001 * 109.50784 * 325.05287 * 11 10 8 13 13 C 1.52565 * 109.48848 * 205.00273 * 11 10 8 14 14 C 1.47100 * 114.32807 * 155.01798 * 13 11 10 15 15 C 1.54867 * 110.31821 * 62.80096 * 14 13 11 16 16 N 1.44576 * 109.57815 * 288.74676 * 15 14 13 17 17 C 1.36936 * 118.64501 * 270.71540 * 16 15 14 18 18 H 1.07998 * 119.99825 * 26.54553 * 17 16 15 19 19 C 1.38816 * 120.00147 * 206.54702 * 17 16 15 20 20 N 1.31620 * 120.00010 * 15.71271 * 19 17 16 21 21 Si 1.86801 * 120.00173 * 195.70570 * 19 17 16 22 22 H 1.48503 * 109.46821 * 60.00367 * 21 19 17 23 23 H 1.48503 * 109.47046 * 179.97438 * 21 19 17 24 24 H 1.48493 * 109.47266 * 300.00250 * 21 19 17 25 25 C 1.47583 * 122.73176 * 90.76402 * 16 15 14 26 26 C 1.50880 * 109.49202 * 85.11541 * 11 10 8 27 27 H 1.09000 * 109.46823 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47314 * 299.99971 * 1 2 3 29 29 H 1.09001 * 109.47127 * 60.00267 * 1 2 3 30 30 H 1.09008 * 109.47351 * 240.00268 * 2 1 3 31 31 H 1.08995 * 109.47446 * 120.00012 * 2 1 3 32 32 H 1.08000 * 122.44701 * 0.04598 * 4 3 2 33 33 H 1.08005 * 124.51764 * 179.70796 * 5 4 3 34 34 H 0.97000 * 120.00578 * 0.02562 * 10 8 7 35 35 H 1.09005 * 108.51756 * 33.76445 * 13 11 10 36 36 H 1.09000 * 108.51564 * 276.27295 * 13 11 10 37 37 H 1.09002 * 109.32725 * 302.54460 * 14 13 11 38 38 H 1.08994 * 109.18922 * 182.97386 * 14 13 11 39 39 H 1.08998 * 109.45302 * 48.77358 * 15 14 13 40 40 H 1.09000 * 109.44925 * 168.71914 * 15 14 13 41 41 H 0.97000 * 120.00099 * 179.97438 * 20 19 17 42 42 H 1.09004 * 108.94507 * 197.15215 * 25 16 15 43 43 H 1.08999 * 108.89440 * 78.46204 * 25 16 15 44 44 H 1.08996 * 109.36492 * 332.04379 * 26 11 10 45 45 H 1.08996 * 109.36653 * 91.78792 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.3745 2.1016 -1.1444 5 6 2.8066 3.3534 -0.9524 6 16 2.7997 3.7538 0.7060 7 6 2.1889 2.1623 1.1370 8 6 1.8995 1.7026 2.4986 9 8 1.4781 0.5760 2.6837 10 7 2.1002 2.5276 3.5452 11 6 1.8115 2.0679 4.9060 12 1 0.9472 1.4040 4.8903 13 6 1.5135 3.2701 5.7968 14 6 0.6757 2.9646 6.9667 15 6 1.4009 1.9653 7.9014 16 7 1.4362 0.6599 7.2810 17 6 0.3966 -0.2025 7.5067 18 1 -0.5830 0.1838 7.7464 19 6 0.6021 -1.5731 7.4275 20 7 1.8258 -2.0572 7.4454 21 14 -0.8584 -2.7303 7.2958 22 1 -1.6329 -2.4122 6.0693 23 1 -0.3741 -4.1324 7.2251 24 1 -1.7290 -2.5663 8.4875 25 6 2.5465 0.2174 6.4153 26 6 3.0067 1.3256 5.4509 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5138 -0.8901 31 1 1.8933 -0.5138 0.8899 32 1 2.3037 1.6570 -2.1261 33 1 3.1185 4.0210 -1.7420 34 1 2.4358 3.4256 3.3977 35 1 1.0085 4.0281 5.1980 36 1 2.4590 3.6842 6.1470 37 1 -0.2654 2.5279 6.6323 38 1 0.4722 3.8861 7.5120 39 1 2.4195 2.3096 8.0806 40 1 0.8671 1.9023 8.8496 41 1 1.9694 -3.0150 7.3905 42 1 2.2200 -0.6447 5.8338 43 1 3.3875 -0.0773 7.0429 44 1 3.5619 0.8793 4.6259 45 1 3.6520 2.0226 5.9856 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001052955730.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:17:11 Heat of formation + Delta-G solvation = -9.143543 kcal Electronic energy + Delta-G solvation = -25904.048013 eV Core-core repulsion = 22433.602707 eV Total energy + Delta-G solvation = -3470.445305 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.21163 -39.67739 -38.58809 -36.30600 -34.53886 -33.67721 -32.76857 -32.37140 -30.18366 -27.84072 -26.49280 -25.40472 -25.05057 -23.34515 -22.43607 -21.68084 -21.01016 -19.71300 -19.07410 -18.53756 -17.37343 -16.91268 -16.75219 -16.29463 -16.05188 -15.85160 -15.51742 -15.07730 -14.91041 -14.73068 -14.61686 -14.33709 -14.02917 -13.91289 -13.62766 -13.34927 -13.17988 -13.01588 -12.86659 -12.73073 -12.56137 -12.43259 -12.16946 -12.04887 -11.96269 -11.76729 -11.68047 -11.52498 -11.40725 -11.35714 -10.84992 -10.43452 -10.18164 -9.72282 -9.37486 -8.64220 -7.85581 -5.30675 -0.45917 0.52295 0.95091 1.40073 1.43639 1.45933 1.50191 2.13974 2.20599 2.50435 3.29027 3.68044 3.76081 3.86583 3.89387 4.06836 4.15801 4.31754 4.36689 4.44894 4.45660 4.47224 4.50425 4.67874 4.72917 4.81813 4.86001 4.93168 5.00337 5.07328 5.09060 5.14260 5.20600 5.23572 5.27806 5.34260 5.40593 5.48106 5.56437 5.58379 5.62493 5.69615 5.77415 6.41528 6.53953 7.19114 7.24769 7.97158 8.35133 9.19334 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.014488 B = 0.004139 C = 0.003469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1932.199208 B = 6764.107796 C = 8068.753121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.075 4.075 3 C -0.026 4.026 4 C -0.158 4.158 5 C -0.212 4.212 6 S 0.236 5.764 7 C -0.307 4.307 8 C 0.576 3.424 9 O -0.563 6.563 10 N -0.712 5.712 11 C 0.166 3.834 12 H 0.052 0.948 13 C -0.104 4.104 14 C -0.132 4.132 15 C 0.148 3.852 16 N -0.604 5.604 17 C -0.263 4.263 18 H 0.065 0.935 19 C -0.048 4.048 20 N -0.934 5.934 21 Si 0.956 3.044 22 H -0.289 1.289 23 H -0.294 1.294 24 H -0.268 1.268 25 C 0.197 3.803 26 C -0.131 4.131 27 H 0.059 0.941 28 H 0.028 0.972 29 H 0.071 0.929 30 H 0.093 0.907 31 H 0.058 0.942 32 H 0.168 0.832 33 H 0.205 0.795 34 H 0.406 0.594 35 H 0.077 0.923 36 H 0.081 0.919 37 H 0.036 0.964 38 H 0.091 0.909 39 H 0.049 0.951 40 H 0.039 0.961 41 H 0.246 0.754 42 H 0.028 0.972 43 H -0.003 1.003 44 H 0.046 0.954 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.465 17.401 -17.856 25.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.114 4.114 3 C -0.042 4.042 4 C -0.188 4.188 5 C -0.350 4.350 6 S 0.505 5.495 7 C -0.427 4.427 8 C 0.364 3.636 9 O -0.443 6.443 10 N -0.363 5.363 11 C 0.062 3.938 12 H 0.070 0.930 13 C -0.142 4.142 14 C -0.172 4.172 15 C 0.022 3.978 16 N -0.326 5.326 17 C -0.394 4.394 18 H 0.082 0.918 19 C -0.243 4.243 20 N -0.580 5.580 21 Si 0.784 3.216 22 H -0.215 1.215 23 H -0.220 1.220 24 H -0.194 1.194 25 C 0.072 3.928 26 C -0.171 4.171 27 H 0.078 0.922 28 H 0.047 0.953 29 H 0.090 0.910 30 H 0.111 0.889 31 H 0.077 0.923 32 H 0.185 0.815 33 H 0.222 0.778 34 H 0.243 0.757 35 H 0.096 0.904 36 H 0.100 0.900 37 H 0.055 0.945 38 H 0.110 0.890 39 H 0.067 0.933 40 H 0.058 0.942 41 H 0.055 0.945 42 H 0.047 0.953 43 H 0.015 0.985 44 H 0.065 0.935 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 3.653 17.820 -16.859 24.802 hybrid contribution -0.874 -2.360 -0.696 2.611 sum 2.779 15.459 -17.555 23.556 Atomic orbital electron populations 1.21533 0.94359 1.01826 1.01078 1.20379 0.96580 0.91457 1.02972 1.19756 0.95795 0.97196 0.91466 1.20065 1.04408 0.94705 0.99629 1.25709 1.05915 1.01254 1.02134 1.82647 1.58839 1.08761 0.99271 1.24431 1.19414 1.02458 0.96368 1.17458 0.77328 0.84755 0.84094 1.90856 1.46870 1.20785 1.85789 1.45964 1.67337 1.16976 1.06043 1.20194 0.97236 0.96496 0.79910 0.92953 1.20539 1.01753 0.95587 0.96321 1.21292 0.98635 1.00018 0.97262 1.20953 0.98119 0.84699 0.94064 1.43829 1.22280 1.13045 1.53456 1.19447 0.89898 0.87671 1.42335 0.91765 1.25696 0.98173 0.98809 1.01618 1.70200 1.20629 1.11605 1.55600 0.85514 0.79832 0.78061 0.78161 1.21542 1.21995 1.19355 1.20563 0.88647 0.93516 0.90113 1.22238 0.97598 0.98784 0.98487 0.92229 0.95294 0.91028 0.88906 0.92327 0.81506 0.77823 0.75721 0.90419 0.90046 0.94470 0.89032 0.93310 0.94223 0.94464 0.95319 0.98537 0.93546 0.90647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.53 9.77 71.98 0.70 -2.82 16 2 C -0.07 -2.04 5.50 29.85 0.16 -1.88 16 3 C -0.03 -0.65 5.16 -20.42 -0.11 -0.76 16 4 C -0.16 -2.69 9.96 21.08 0.21 -2.48 16 5 C -0.21 -2.82 10.92 66.81 0.73 -2.09 16 6 S 0.24 3.86 22.16 -56.49 -1.25 2.61 16 7 C -0.31 -8.29 6.45 24.08 0.16 -8.13 16 8 C 0.58 20.28 7.60 86.42 0.66 20.94 16 9 O -0.56 -25.60 13.37 -4.34 -0.06 -25.66 16 10 N -0.71 -21.69 4.93 -450.58 -2.22 -23.91 16 11 C 0.17 6.07 2.06 44.16 0.09 6.16 16 12 H 0.05 2.52 6.92 -2.39 -0.02 2.50 16 13 C -0.10 -2.97 4.69 28.62 0.13 -2.84 16 14 C -0.13 -4.27 5.74 29.40 0.17 -4.10 16 15 C 0.15 5.99 5.66 87.38 0.49 6.48 16 16 N -0.60 -31.13 2.27 -698.42 -1.58 -32.71 16 17 C -0.26 -15.18 9.44 84.03 0.79 -14.38 16 18 H 0.06 3.62 7.88 -2.91 -0.02 3.59 16 19 C -0.05 -2.84 4.87 84.86 0.41 -2.43 16 20 N -0.93 -58.78 11.01 21.65 0.24 -58.54 16 21 Si 0.96 48.49 29.58 68.60 2.03 50.52 16 22 H -0.29 -14.75 7.11 99.48 0.71 -14.04 16 23 H -0.29 -14.92 7.11 99.48 0.71 -14.21 16 24 H -0.27 -12.81 7.11 99.48 0.71 -12.10 16 25 C 0.20 10.30 4.67 86.49 0.40 10.70 16 26 C -0.13 -5.28 5.39 30.22 0.16 -5.11 16 27 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 28 H 0.03 0.95 7.58 -2.39 -0.02 0.93 16 29 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.09 1.96 8.12 -2.38 -0.02 1.94 16 31 H 0.06 2.07 6.33 -2.39 -0.02 2.06 16 32 H 0.17 1.98 8.06 -2.91 -0.02 1.96 16 33 H 0.20 1.17 8.06 -2.91 -0.02 1.15 16 34 H 0.41 9.10 7.71 -92.71 -0.72 8.38 16 35 H 0.08 1.81 8.04 -2.38 -0.02 1.80 16 36 H 0.08 1.96 7.36 -2.39 -0.02 1.94 16 37 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 39 H 0.05 1.81 8.07 -2.39 -0.02 1.79 16 40 H 0.04 1.64 7.99 -2.39 -0.02 1.62 16 41 H 0.25 15.17 8.31 -92.71 -0.77 14.40 16 42 H 0.03 1.76 6.33 -2.38 -0.02 1.74 16 43 H 0.00 -0.19 8.03 -2.39 -0.02 -0.21 16 44 H 0.05 1.93 7.85 -2.39 -0.02 1.91 16 45 H 0.07 2.59 7.32 -2.39 -0.02 2.57 16 Total: -1.00 -76.63 365.03 2.60 -74.02 By element: Atomic # 1 Polarization: 16.13 SS G_CDS: 0.27 Total: 16.41 kcal Atomic # 6 Polarization: -7.91 SS G_CDS: 5.18 Total: -2.74 kcal Atomic # 7 Polarization: -111.59 SS G_CDS: -3.57 Total: -115.16 kcal Atomic # 8 Polarization: -25.60 SS G_CDS: -0.06 Total: -25.66 kcal Atomic # 14 Polarization: 48.49 SS G_CDS: 2.03 Total: 50.52 kcal Atomic # 16 Polarization: 3.86 SS G_CDS: -1.25 Total: 2.61 kcal Total: -76.63 2.60 -74.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052955730.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.880 kcal (2) G-P(sol) polarization free energy of solvation -76.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds