Wall clock time and date at job start Tue Mar 31 2020 13:09:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50695 * 109.47273 * 2 1 4 4 C 1.33820 * 124.52014 * 89.99717 * 3 2 1 5 5 C 1.37480 * 115.09715 * 179.70345 * 4 3 2 6 6 C 1.36645 * 113.29678 * 0.49675 * 5 4 3 7 7 C 1.46584 * 125.46039 * 179.79809 * 6 5 4 8 8 O 1.21698 * 119.99650 * 359.71838 * 7 6 5 9 9 N 1.34770 * 120.00013 * 179.71495 * 7 6 5 10 10 C 1.46504 * 119.99957 * 179.97438 * 9 7 6 11 11 H 1.09004 * 109.49600 * 325.07176 * 10 9 7 12 12 C 1.53040 * 109.49994 * 205.00519 * 10 9 7 13 13 C 1.53039 * 109.53845 * 178.65105 * 12 10 9 14 14 C 1.53197 * 109.31448 * 61.36337 * 13 12 10 15 15 H 1.09000 * 109.58540 * 65.28898 * 14 13 12 16 16 C 1.52995 * 109.58880 * 185.57745 * 14 13 12 17 17 N 1.46933 * 108.77262 * 305.36794 * 14 13 12 18 18 C 1.36939 * 120.62648 * 233.60582 * 17 14 13 19 19 H 1.08001 * 119.99964 * 29.01603 * 18 17 14 20 20 C 1.38809 * 119.99825 * 209.01423 * 18 17 14 21 21 N 1.31617 * 120.00017 * 15.02865 * 20 18 17 22 22 Si 1.86798 * 119.99825 * 195.02036 * 20 18 17 23 23 H 1.48503 * 109.46653 * 90.00545 * 22 20 18 24 24 H 1.48503 * 109.47424 * 209.99786 * 22 20 18 25 25 H 1.48493 * 109.47527 * 330.00449 * 22 20 18 26 26 C 1.46920 * 118.74206 * 53.60593 * 17 14 13 27 27 S 1.70612 * 124.52148 * 269.97012 * 3 2 1 28 28 H 1.09000 * 109.46299 * 60.00305 * 1 2 3 29 29 H 1.09003 * 109.46996 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.46992 * 300.00325 * 1 2 3 31 31 H 1.08995 * 109.47336 * 239.99255 * 2 1 3 32 32 H 1.09007 * 109.46727 * 120.00218 * 2 1 3 33 33 H 1.07997 * 122.45157 * 359.97438 * 4 3 2 34 34 H 1.07998 * 123.35342 * 180.29088 * 5 4 3 35 35 H 0.97003 * 120.00387 * 0.02562 * 9 7 6 36 36 H 1.08995 * 109.45853 * 58.62808 * 12 10 9 37 37 H 1.09001 * 109.44539 * 298.66241 * 12 10 9 38 38 H 1.08999 * 109.49978 * 301.41207 * 13 12 10 39 39 H 1.08999 * 109.49712 * 181.31103 * 13 12 10 40 40 H 1.09003 * 109.46978 * 60.00164 * 16 14 13 41 41 H 1.08997 * 109.46924 * 300.00037 * 16 14 13 42 42 H 1.09001 * 109.47042 * 179.97438 * 16 14 13 43 43 H 0.96997 * 119.99877 * 180.02562 * 21 20 18 44 44 H 1.08998 * 109.58733 * 186.60153 * 26 17 14 45 45 H 1.08998 * 109.58483 * 66.17752 * 26 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2852 2.1358 1.1026 5 6 2.7434 3.4123 0.8775 6 6 2.8474 3.7231 -0.4491 7 6 3.3023 5.0080 -0.9883 8 8 3.6207 5.9067 -0.2321 9 7 3.3680 5.1939 -2.3215 10 6 3.8221 6.4783 -2.8605 11 1 3.4835 7.2855 -2.2109 12 6 3.2452 6.6760 -4.2641 13 6 3.6916 8.0324 -4.8146 14 6 5.2202 8.0617 -4.9116 15 1 5.5535 7.3318 -5.6493 16 6 5.6810 9.4597 -5.3286 17 7 5.7839 7.7291 -3.5961 18 6 6.6945 8.5584 -2.9974 19 1 6.6728 9.6192 -3.1988 20 6 7.6453 8.0355 -2.1317 21 7 7.8712 6.7391 -2.1077 22 14 8.6042 9.1718 -1.0010 23 1 7.8763 9.3201 0.2849 24 1 9.9489 8.5961 -0.7450 25 1 8.7496 10.5025 -1.6438 26 6 5.3522 6.4899 -2.9352 27 16 2.3554 2.3321 -1.4057 28 1 -0.3632 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.8934 -0.5139 -0.8899 32 1 1.8934 -0.5139 0.8900 33 1 2.1439 1.7376 2.0965 34 1 2.9929 4.1020 1.6702 35 1 3.1139 4.4776 -2.9243 36 1 2.1567 6.6435 -4.2171 37 1 3.6043 5.8823 -4.9191 38 1 3.3542 8.8250 -4.1467 39 1 3.2613 8.1826 -5.8047 40 1 5.3511 10.1872 -4.5870 41 1 5.2516 9.7094 -6.2987 42 1 6.7688 9.4784 -5.3965 43 1 8.5353 6.3737 -1.5025 44 1 5.7676 6.4489 -1.9284 45 1 5.6964 5.6302 -3.5101 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071660366.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:09:10 Heat of formation + Delta-G solvation = 2.999437 kcal Electronic energy + Delta-G solvation = -25163.301590 eV Core-core repulsion = 21693.382844 eV Total energy + Delta-G solvation = -3469.918746 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.55453 -38.17317 -37.35720 -34.39075 -33.90695 -32.79096 -30.87922 -29.84245 -28.72797 -26.19565 -25.31416 -24.63406 -22.56030 -22.26196 -21.53881 -20.26073 -19.54110 -18.82245 -17.75863 -16.45282 -16.14722 -15.47641 -15.32374 -14.78172 -14.51451 -14.39060 -14.02384 -13.76449 -13.65975 -13.40972 -13.33722 -12.96302 -12.73151 -12.44488 -12.34310 -12.06215 -11.86105 -11.72670 -11.42232 -11.37566 -11.10527 -10.92743 -10.85051 -10.69044 -10.50792 -10.36993 -10.23150 -9.93192 -9.79366 -9.44997 -9.43582 -8.74915 -8.63747 -8.47980 -8.37921 -6.58349 -5.69906 -3.14802 0.52748 1.41544 1.83598 2.42183 3.43558 3.48606 3.52239 3.53308 3.58520 4.43154 4.57025 4.72501 4.94694 5.03308 5.15810 5.33624 5.36324 5.39618 5.43921 5.51792 5.51915 5.59822 5.66166 5.69775 5.84893 5.96171 5.98762 6.11964 6.14030 6.28919 6.33014 6.34807 6.41219 6.47463 6.51520 6.64926 6.76105 6.93067 7.06825 7.15096 7.35119 7.78587 7.86391 7.91953 8.53063 8.59126 9.28287 9.92608 10.47598 11.38024 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.016516 B = 0.003436 C = 0.003002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1694.962208 B = 8147.950809 C = 9324.668218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.054 4.054 3 C -0.200 4.200 4 C -0.150 4.150 5 C -0.061 4.061 6 C -0.251 4.251 7 C 0.584 3.416 8 O -0.520 6.520 9 N -0.715 5.715 10 C 0.117 3.883 11 H 0.084 0.916 12 C -0.117 4.117 13 C -0.126 4.126 14 C 0.165 3.835 15 H 0.025 0.975 16 C -0.136 4.136 17 N -0.583 5.583 18 C -0.253 4.253 19 H 0.071 0.929 20 C 0.006 3.994 21 N -0.900 5.900 22 Si 0.901 3.099 23 H -0.286 1.286 24 H -0.292 1.292 25 H -0.279 1.279 26 C 0.168 3.832 27 S 0.192 5.808 28 H 0.057 0.943 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.075 0.925 32 H 0.082 0.918 33 H 0.141 0.859 34 H 0.153 0.847 35 H 0.389 0.611 36 H 0.051 0.949 37 H 0.059 0.941 38 H 0.061 0.939 39 H 0.055 0.945 40 H 0.053 0.947 41 H 0.038 0.962 42 H 0.061 0.939 43 H 0.253 0.747 44 H 0.096 0.904 45 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.227 -12.585 -0.233 19.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.093 4.093 3 C -0.320 4.320 4 C -0.181 4.181 5 C -0.093 4.093 6 C -0.372 4.372 7 C 0.369 3.631 8 O -0.397 6.397 9 N -0.365 5.365 10 C 0.012 3.988 11 H 0.102 0.898 12 C -0.155 4.155 13 C -0.165 4.165 14 C 0.058 3.942 15 H 0.043 0.957 16 C -0.194 4.194 17 N -0.306 5.306 18 C -0.382 4.382 19 H 0.089 0.911 20 C -0.193 4.193 21 N -0.544 5.544 22 Si 0.731 3.269 23 H -0.213 1.213 24 H -0.218 1.218 25 H -0.205 1.205 26 C 0.041 3.959 27 S 0.460 5.540 28 H 0.076 0.924 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.093 0.907 32 H 0.101 0.899 33 H 0.159 0.841 34 H 0.170 0.830 35 H 0.222 0.778 36 H 0.070 0.930 37 H 0.078 0.922 38 H 0.080 0.920 39 H 0.074 0.926 40 H 0.072 0.928 41 H 0.057 0.943 42 H 0.080 0.920 43 H 0.063 0.937 44 H 0.114 0.886 45 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges -14.935 -12.266 -1.176 19.362 hybrid contribution 0.537 0.274 1.989 2.079 sum -14.398 -11.992 0.813 18.756 Atomic orbital electron populations 1.21803 0.94197 1.02005 1.02606 1.20128 0.96243 0.89524 1.03440 1.24191 1.07921 1.02006 0.97854 1.19930 1.04548 0.94191 0.99420 1.20756 0.96930 0.96240 0.95386 1.24786 1.15071 0.99339 0.97959 1.16912 0.78018 0.85487 0.82709 1.90871 1.48496 1.42478 1.57868 1.45970 1.67604 1.17185 1.05777 1.22049 0.99404 0.83693 0.93635 0.89796 1.21689 0.98960 0.98781 0.96083 1.22046 0.98876 0.96128 0.99494 1.20492 0.90343 0.94871 0.88490 0.95745 1.21801 1.01836 0.97074 0.98671 1.44025 1.47786 1.24083 1.14754 1.19154 1.06613 0.89747 1.22715 0.91147 1.25079 0.97066 0.95782 1.01396 1.69994 1.34904 1.10814 1.38724 0.86315 0.79042 0.80088 0.81464 1.21327 1.21837 1.20461 1.21099 0.86758 0.87728 1.00362 1.82877 1.60230 1.02938 1.07949 0.92382 0.91997 0.92200 0.90665 0.89914 0.84094 0.82987 0.77830 0.93028 0.92249 0.92026 0.92632 0.92768 0.94345 0.92017 0.93737 0.88568 0.96498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 9.90 37.16 0.37 -0.59 16 2 C -0.05 -0.40 6.36 -27.88 -0.18 -0.58 16 3 C -0.20 -2.06 5.53 -35.86 -0.20 -2.26 16 4 C -0.15 -1.67 10.00 -41.41 -0.41 -2.08 16 5 C -0.06 -0.84 10.01 -40.43 -0.40 -1.25 16 6 C -0.25 -3.84 6.45 -36.79 -0.24 -4.07 16 7 C 0.58 11.12 7.75 -12.90 -0.10 11.02 16 8 O -0.52 -12.19 16.50 5.19 0.09 -12.11 16 9 N -0.72 -12.51 5.08 -55.02 -0.28 -12.79 16 10 C 0.12 2.35 2.60 -67.81 -0.18 2.17 16 11 H 0.08 1.90 7.58 -51.93 -0.39 1.51 16 12 C -0.12 -1.93 5.35 -26.69 -0.14 -2.07 16 13 C -0.13 -2.16 5.37 -26.61 -0.14 -2.30 16 14 C 0.16 3.40 3.50 -67.60 -0.24 3.16 16 15 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 16 C -0.14 -2.58 7.95 37.15 0.30 -2.28 16 17 N -0.58 -14.70 2.99 -164.78 -0.49 -15.19 16 18 C -0.25 -7.00 8.61 -15.06 -0.13 -7.13 16 19 H 0.07 1.90 6.20 -52.49 -0.33 1.57 16 20 C 0.01 0.16 4.96 -17.43 -0.09 0.08 16 21 N -0.90 -27.05 11.14 55.49 0.62 -26.43 16 22 Si 0.90 22.69 29.58 -169.99 -5.03 17.66 16 23 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 24 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 25 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 26 C 0.17 4.14 4.87 -3.71 -0.02 4.12 16 27 S 0.19 2.18 22.10 -107.50 -2.38 -0.20 16 28 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.14 1.24 8.06 -52.49 -0.42 0.81 16 34 H 0.15 2.13 8.06 -52.49 -0.42 1.70 16 35 H 0.39 5.57 7.72 -40.82 -0.31 5.25 16 36 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.05 1.04 7.40 -51.93 -0.38 0.66 16 41 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.06 1.26 7.66 -51.93 -0.40 0.86 16 43 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 44 H 0.10 2.81 6.06 -51.93 -0.31 2.50 16 45 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 LS Contribution 372.65 15.07 5.62 5.62 Total: -1.00 -32.82 372.65 -10.84 -43.66 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: -7.18 Total: 3.82 kcal Atomic # 6 Polarization: -2.24 SS G_CDS: -1.80 Total: -4.04 kcal Atomic # 7 Polarization: -54.26 SS G_CDS: -0.15 Total: -54.42 kcal Atomic # 8 Polarization: -12.19 SS G_CDS: 0.09 Total: -12.11 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -5.03 Total: 17.66 kcal Atomic # 16 Polarization: 2.18 SS G_CDS: -2.38 Total: -0.20 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -32.82 -10.84 -43.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071660366.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.662 kcal (2) G-P(sol) polarization free energy of solvation -32.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.662 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds