Wall clock time and date at job start Tue Mar 31 2020 13:09:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50695 * 109.47273 * 2 1 4 4 C 1.33820 * 124.52014 * 89.99717 * 3 2 1 5 5 C 1.37480 * 115.09715 * 179.70345 * 4 3 2 6 6 C 1.36645 * 113.29678 * 0.49675 * 5 4 3 7 7 C 1.46584 * 125.46039 * 179.79809 * 6 5 4 8 8 O 1.21698 * 119.99650 * 359.71838 * 7 6 5 9 9 N 1.34770 * 120.00013 * 179.71495 * 7 6 5 10 10 C 1.46504 * 119.99957 * 179.97438 * 9 7 6 11 11 H 1.09004 * 109.49600 * 325.07176 * 10 9 7 12 12 C 1.53040 * 109.49994 * 205.00519 * 10 9 7 13 13 C 1.53039 * 109.53845 * 178.65105 * 12 10 9 14 14 C 1.53197 * 109.31448 * 61.36337 * 13 12 10 15 15 H 1.09000 * 109.58540 * 65.28898 * 14 13 12 16 16 C 1.52995 * 109.58880 * 185.57745 * 14 13 12 17 17 N 1.46933 * 108.77262 * 305.36794 * 14 13 12 18 18 C 1.36939 * 120.62648 * 233.60582 * 17 14 13 19 19 H 1.08001 * 119.99964 * 29.01603 * 18 17 14 20 20 C 1.38809 * 119.99825 * 209.01423 * 18 17 14 21 21 N 1.31617 * 120.00017 * 15.02865 * 20 18 17 22 22 Si 1.86798 * 119.99825 * 195.02036 * 20 18 17 23 23 H 1.48503 * 109.46653 * 90.00545 * 22 20 18 24 24 H 1.48503 * 109.47424 * 209.99786 * 22 20 18 25 25 H 1.48493 * 109.47527 * 330.00449 * 22 20 18 26 26 C 1.46920 * 118.74206 * 53.60593 * 17 14 13 27 27 S 1.70612 * 124.52148 * 269.97012 * 3 2 1 28 28 H 1.09000 * 109.46299 * 60.00305 * 1 2 3 29 29 H 1.09003 * 109.46996 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.46992 * 300.00325 * 1 2 3 31 31 H 1.08995 * 109.47336 * 239.99255 * 2 1 3 32 32 H 1.09007 * 109.46727 * 120.00218 * 2 1 3 33 33 H 1.07997 * 122.45157 * 359.97438 * 4 3 2 34 34 H 1.07998 * 123.35342 * 180.29088 * 5 4 3 35 35 H 0.97003 * 120.00387 * 0.02562 * 9 7 6 36 36 H 1.08995 * 109.45853 * 58.62808 * 12 10 9 37 37 H 1.09001 * 109.44539 * 298.66241 * 12 10 9 38 38 H 1.08999 * 109.49978 * 301.41207 * 13 12 10 39 39 H 1.08999 * 109.49712 * 181.31103 * 13 12 10 40 40 H 1.09003 * 109.46978 * 60.00164 * 16 14 13 41 41 H 1.08997 * 109.46924 * 300.00037 * 16 14 13 42 42 H 1.09001 * 109.47042 * 179.97438 * 16 14 13 43 43 H 0.96997 * 119.99877 * 180.02562 * 21 20 18 44 44 H 1.08998 * 109.58733 * 186.60153 * 26 17 14 45 45 H 1.08998 * 109.58483 * 66.17752 * 26 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2852 2.1358 1.1026 5 6 2.7434 3.4123 0.8775 6 6 2.8474 3.7231 -0.4491 7 6 3.3023 5.0080 -0.9883 8 8 3.6207 5.9067 -0.2321 9 7 3.3680 5.1939 -2.3215 10 6 3.8221 6.4783 -2.8605 11 1 3.4835 7.2855 -2.2109 12 6 3.2452 6.6760 -4.2641 13 6 3.6916 8.0324 -4.8146 14 6 5.2202 8.0617 -4.9116 15 1 5.5535 7.3318 -5.6493 16 6 5.6810 9.4597 -5.3286 17 7 5.7839 7.7291 -3.5961 18 6 6.6945 8.5584 -2.9974 19 1 6.6728 9.6192 -3.1988 20 6 7.6453 8.0355 -2.1317 21 7 7.8712 6.7391 -2.1077 22 14 8.6042 9.1718 -1.0010 23 1 7.8763 9.3201 0.2849 24 1 9.9489 8.5961 -0.7450 25 1 8.7496 10.5025 -1.6438 26 6 5.3522 6.4899 -2.9352 27 16 2.3554 2.3321 -1.4057 28 1 -0.3632 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.8934 -0.5139 -0.8899 32 1 1.8934 -0.5139 0.8900 33 1 2.1439 1.7376 2.0965 34 1 2.9929 4.1020 1.6702 35 1 3.1139 4.4776 -2.9243 36 1 2.1567 6.6435 -4.2171 37 1 3.6043 5.8823 -4.9191 38 1 3.3542 8.8250 -4.1467 39 1 3.2613 8.1826 -5.8047 40 1 5.3511 10.1872 -4.5870 41 1 5.2516 9.7094 -6.2987 42 1 6.7688 9.4784 -5.3965 43 1 8.5353 6.3737 -1.5025 44 1 5.7676 6.4489 -1.9284 45 1 5.6964 5.6302 -3.5101 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071660366.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:09:09 Heat of formation + Delta-G solvation = -17.511924 kcal Electronic energy + Delta-G solvation = -25164.191029 eV Core-core repulsion = 21693.382844 eV Total energy + Delta-G solvation = -3470.808186 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.05810 -39.48044 -38.71515 -36.06255 -34.71805 -34.63592 -32.42190 -31.76123 -29.75177 -27.78037 -26.95189 -25.88513 -24.06666 -23.28563 -22.84638 -21.86671 -21.16654 -20.10062 -18.91756 -18.34294 -17.51489 -16.98426 -16.79787 -16.09701 -16.04658 -15.66414 -15.38959 -15.12236 -15.06131 -14.85097 -14.61187 -14.29369 -14.17311 -13.82353 -13.53836 -13.30658 -13.08646 -12.85260 -12.75215 -12.74076 -12.58896 -12.42455 -12.29348 -12.12756 -12.08501 -11.99497 -11.69625 -11.67688 -11.46433 -11.18987 -11.05828 -10.55863 -10.23484 -9.66391 -9.54300 -8.64354 -7.85957 -5.32447 -0.53231 0.42992 0.87142 1.37393 1.39686 1.44911 1.50320 2.04493 2.20123 2.49767 3.30349 3.61719 3.70607 3.80847 3.97484 4.06889 4.14631 4.23252 4.32840 4.36908 4.41988 4.48115 4.57862 4.69870 4.78217 4.80626 4.86996 4.91631 4.99983 5.04818 5.06168 5.13270 5.16579 5.19389 5.27411 5.30325 5.36059 5.40346 5.42474 5.54514 5.60483 5.69465 5.77160 6.38634 6.48090 7.11951 7.17442 7.88670 8.37912 9.19131 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.016516 B = 0.003436 C = 0.003002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1694.962208 B = 8147.950809 C = 9324.668218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.056 4.056 3 C -0.181 4.181 4 C -0.161 4.161 5 C -0.059 4.059 6 C -0.303 4.303 7 C 0.580 3.420 8 O -0.580 6.580 9 N -0.705 5.705 10 C 0.131 3.869 11 H 0.053 0.947 12 C -0.109 4.109 13 C -0.117 4.117 14 C 0.152 3.848 15 H 0.023 0.977 16 C -0.129 4.129 17 N -0.603 5.603 18 C -0.250 4.250 19 H 0.077 0.923 20 C -0.056 4.056 21 N -0.934 5.934 22 Si 0.958 3.042 23 H -0.297 1.297 24 H -0.294 1.294 25 H -0.260 1.260 26 C 0.180 3.820 27 S 0.240 5.760 28 H 0.053 0.947 29 H 0.080 0.920 30 H 0.056 0.944 31 H 0.088 0.912 32 H 0.100 0.900 33 H 0.167 0.833 34 H 0.139 0.861 35 H 0.407 0.593 36 H 0.086 0.914 37 H 0.074 0.926 38 H 0.053 0.947 39 H 0.099 0.901 40 H 0.045 0.955 41 H 0.080 0.920 42 H 0.038 0.962 43 H 0.244 0.756 44 H 0.042 0.958 45 H -0.002 1.002 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.733 -14.128 -1.855 22.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.095 4.095 3 C -0.301 4.301 4 C -0.191 4.191 5 C -0.093 4.093 6 C -0.423 4.423 7 C 0.367 3.633 8 O -0.462 6.462 9 N -0.355 5.355 10 C 0.025 3.975 11 H 0.071 0.929 12 C -0.147 4.147 13 C -0.156 4.156 14 C 0.047 3.953 15 H 0.041 0.959 16 C -0.187 4.187 17 N -0.327 5.327 18 C -0.380 4.380 19 H 0.094 0.906 20 C -0.251 4.251 21 N -0.581 5.581 22 Si 0.786 3.214 23 H -0.225 1.225 24 H -0.220 1.220 25 H -0.184 1.184 26 C 0.053 3.947 27 S 0.509 5.491 28 H 0.072 0.928 29 H 0.099 0.901 30 H 0.075 0.925 31 H 0.106 0.894 32 H 0.118 0.882 33 H 0.185 0.815 34 H 0.156 0.844 35 H 0.243 0.757 36 H 0.104 0.896 37 H 0.093 0.907 38 H 0.071 0.929 39 H 0.117 0.883 40 H 0.064 0.936 41 H 0.099 0.901 42 H 0.057 0.943 43 H 0.053 0.947 44 H 0.061 0.939 45 H 0.016 0.984 Dipole moment (debyes) X Y Z Total from point charges -17.476 -13.816 -2.865 22.461 hybrid contribution 1.247 0.637 2.462 2.832 sum -16.229 -13.179 -0.403 20.910 Atomic orbital electron populations 1.21810 0.93192 1.03202 1.02321 1.20332 0.96944 0.87313 1.04956 1.24746 1.05163 1.03141 0.97075 1.20070 1.04961 0.92961 1.01111 1.20931 0.96228 0.97386 0.94765 1.24501 1.18718 0.99645 0.99400 1.17495 0.76817 0.86330 0.82632 1.90822 1.51272 1.44942 1.59167 1.45780 1.66951 1.16965 1.05843 1.21613 0.96115 0.84018 0.95780 0.92863 1.21673 1.00831 0.99048 0.93101 1.21956 0.95821 0.96128 1.01737 1.20828 0.92774 0.95704 0.85966 0.95893 1.21734 1.00524 0.95758 1.00646 1.44322 1.47818 1.23637 1.16907 1.19508 1.06071 0.90469 1.21952 0.90565 1.25823 0.98833 0.97014 1.03408 1.70161 1.35845 1.12416 1.39666 0.85398 0.77419 0.79322 0.79213 1.22497 1.22027 1.18406 1.20752 0.89807 0.87219 0.96962 1.82600 1.58892 1.00378 1.07275 0.92754 0.90125 0.92469 0.89384 0.88215 0.81515 0.84350 0.75722 0.89553 0.90724 0.92864 0.88302 0.93564 0.90135 0.94310 0.94716 0.93900 0.98413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.90 71.98 0.71 -0.67 16 2 C -0.06 -0.62 6.36 29.85 0.19 -0.43 16 3 C -0.18 -3.26 5.53 24.68 0.14 -3.12 16 4 C -0.16 -3.34 10.00 21.09 0.21 -3.13 16 5 C -0.06 -1.68 10.01 21.72 0.22 -1.47 16 6 C -0.30 -9.48 6.45 24.08 0.16 -9.32 16 7 C 0.58 23.35 7.75 86.42 0.67 24.02 16 8 O -0.58 -29.54 16.50 -4.34 -0.07 -29.61 16 9 N -0.70 -25.26 5.08 -446.22 -2.27 -27.53 16 10 C 0.13 5.36 2.60 45.07 0.12 5.48 16 11 H 0.05 2.53 7.58 -2.38 -0.02 2.51 16 12 C -0.11 -3.32 5.35 30.62 0.16 -3.16 16 13 C -0.12 -3.69 5.37 30.67 0.16 -3.53 16 14 C 0.15 6.13 3.50 44.97 0.16 6.29 16 15 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 16 C -0.13 -4.68 7.95 71.98 0.57 -4.11 16 17 N -0.60 -31.23 2.99 -675.23 -2.02 -33.25 16 18 C -0.25 -14.26 8.61 84.03 0.72 -13.53 16 19 H 0.08 4.18 6.20 -2.91 -0.02 4.16 16 20 C -0.06 -3.34 4.96 84.86 0.42 -2.92 16 21 N -0.93 -59.37 11.14 21.65 0.24 -59.12 16 22 Si 0.96 48.56 29.58 68.60 2.03 50.59 16 23 H -0.30 -15.45 7.11 99.48 0.71 -14.75 16 24 H -0.29 -14.83 7.11 99.48 0.71 -14.12 16 25 H -0.26 -12.20 7.11 99.48 0.71 -11.49 16 26 C 0.18 9.35 4.87 86.36 0.42 9.77 16 27 S 0.24 5.03 22.10 -56.49 -1.25 3.78 16 28 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 29 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 30 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.10 0.85 8.14 -2.38 -0.02 0.83 16 33 H 0.17 2.52 8.06 -2.91 -0.02 2.50 16 34 H 0.14 4.19 8.06 -2.91 -0.02 4.17 16 35 H 0.41 11.39 7.72 -92.71 -0.72 10.67 16 36 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 37 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 38 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 39 H 0.10 2.35 8.14 -2.39 -0.02 2.33 16 40 H 0.05 1.72 7.40 -2.39 -0.02 1.71 16 41 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 42 H 0.04 1.55 7.66 -2.39 -0.02 1.53 16 43 H 0.24 15.22 8.31 -92.71 -0.77 14.45 16 44 H 0.04 2.69 6.06 -2.39 -0.01 2.67 16 45 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 Total: -1.00 -78.43 372.65 1.96 -76.46 By element: Atomic # 1 Polarization: 18.24 SS G_CDS: 0.27 Total: 18.51 kcal Atomic # 6 Polarization: -4.86 SS G_CDS: 5.03 Total: 0.18 kcal Atomic # 7 Polarization: -115.86 SS G_CDS: -4.04 Total: -119.90 kcal Atomic # 8 Polarization: -29.54 SS G_CDS: -0.07 Total: -29.61 kcal Atomic # 14 Polarization: 48.56 SS G_CDS: 2.03 Total: 50.59 kcal Atomic # 16 Polarization: 5.03 SS G_CDS: -1.25 Total: 3.78 kcal Total: -78.43 1.96 -76.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071660366.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.949 kcal (2) G-P(sol) polarization free energy of solvation -78.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds