Wall clock time and date at job start Tue Mar 31 2020 13:16:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50695 * 109.47353 * 2 1 4 4 C 1.37470 * 123.35305 * 265.21914 * 3 2 1 5 5 C 1.33820 * 115.10321 * 180.29701 * 4 3 2 6 6 S 1.70619 * 110.94930 * 359.72428 * 5 4 3 7 7 C 1.36654 * 123.35060 * 85.00083 * 3 2 1 8 8 C 1.46576 * 125.45643 * 0.02562 * 7 3 2 9 9 O 1.21706 * 120.00350 * 359.71497 * 8 7 3 10 10 N 1.34781 * 120.00084 * 179.72256 * 8 7 3 11 11 C 1.46501 * 120.00248 * 179.97438 * 10 8 7 12 12 H 1.09002 * 109.49271 * 34.93489 * 11 10 8 13 13 C 1.53039 * 109.49536 * 154.99560 * 11 10 8 14 14 C 1.53045 * 109.53798 * 181.31673 * 13 11 10 15 15 C 1.53193 * 109.31187 * 298.63851 * 14 13 11 16 16 H 1.08998 * 109.58703 * 294.84680 * 15 14 13 17 17 C 1.52993 * 109.58601 * 174.56189 * 15 14 13 18 18 N 1.46933 * 108.77640 * 54.63006 * 15 14 13 19 19 C 1.36942 * 120.62589 * 126.41465 * 18 15 14 20 20 H 1.07997 * 120.00273 * 330.89585 * 19 18 15 21 21 C 1.38814 * 119.99561 * 150.90025 * 19 18 15 22 22 N 1.31611 * 120.00134 * 160.71242 * 21 19 18 23 23 Si 1.86803 * 119.99939 * 340.70236 * 21 19 18 24 24 H 1.48501 * 109.46604 * 92.32861 * 23 21 19 25 25 H 1.48495 * 109.47098 * 212.32476 * 23 21 19 26 26 H 1.48496 * 109.47343 * 332.32866 * 23 21 19 27 27 C 1.46921 * 118.74122 * 306.39488 * 18 15 14 28 28 H 1.08996 * 109.46689 * 59.99371 * 1 2 3 29 29 H 1.08997 * 109.47059 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46613 * 300.00339 * 1 2 3 31 31 H 1.09006 * 109.47201 * 239.99603 * 2 1 3 32 32 H 1.09005 * 109.47098 * 120.00218 * 2 1 3 33 33 H 1.08000 * 122.45157 * 0.02562 * 4 3 2 34 34 H 1.07990 * 124.52605 * 179.70831 * 5 4 3 35 35 H 0.96997 * 119.99601 * 359.97438 * 10 8 7 36 36 H 1.09000 * 109.46324 * 61.29925 * 13 11 10 37 37 H 1.09000 * 109.45271 * 301.32792 * 13 11 10 38 38 H 1.08991 * 109.49862 * 178.68305 * 14 13 11 39 39 H 1.08999 * 109.49421 * 58.58466 * 14 13 11 40 40 H 1.08996 * 109.47327 * 60.28639 * 17 15 14 41 41 H 1.09004 * 109.46800 * 180.28038 * 17 15 14 42 42 H 1.09000 * 109.47505 * 300.28185 * 17 15 14 43 43 H 0.96998 * 120.00155 * 179.97438 * 22 21 19 44 44 H 1.09005 * 109.58547 * 293.81894 * 27 18 15 45 45 H 1.08994 * 109.70520 * 173.46411 * 27 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.3746 2.1014 -1.1443 5 6 2.8069 3.3532 -0.9524 6 16 2.8000 3.7536 0.7061 7 6 2.1891 2.1622 1.1372 8 6 1.9007 1.7021 2.4986 9 8 1.4799 0.5752 2.6839 10 7 2.1012 2.5271 3.5454 11 6 1.8124 2.0675 4.9062 12 1 2.0519 1.0075 4.9906 13 6 2.6571 2.8631 5.9040 14 6 2.3805 2.3614 7.3232 15 6 0.9018 2.5803 7.6587 16 1 0.6875 3.6486 7.6858 17 6 0.5877 1.9594 9.0213 18 7 0.0817 1.9396 6.6215 19 6 -0.8935 1.0398 6.9601 20 1 -0.7903 0.4424 7.8538 21 6 -2.0147 0.8954 6.1544 22 7 -2.7522 -0.1911 6.2415 23 14 -2.4767 2.2436 4.9467 24 1 -1.8589 1.9587 3.6268 25 1 -3.9538 2.2931 4.8015 26 1 -1.9849 3.5505 5.4518 27 6 0.3274 2.2830 5.2142 28 1 -0.3632 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3632 0.5139 0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 2.3041 1.6569 -2.1260 34 1 3.1188 4.0208 -1.7419 35 1 2.4368 3.4252 3.3978 36 1 2.3998 3.9201 5.8360 37 1 3.7138 2.7309 5.6717 38 1 2.9996 2.9124 8.0310 39 1 2.6141 1.2986 7.3853 40 1 1.2025 2.4329 9.7867 41 1 -0.4658 2.1119 9.2558 42 1 0.8026 0.8912 8.9921 43 1 -3.5358 -0.2918 5.6788 44 1 0.0662 3.3272 5.0420 45 1 -0.2760 1.6444 4.5693 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001072099391.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:16:56 Heat of formation + Delta-G solvation = 11.281032 kcal Electronic energy + Delta-G solvation = -26035.952080 eV Core-core repulsion = 22566.392450 eV Total energy + Delta-G solvation = -3469.559629 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.92554 -38.51138 -37.44427 -34.58425 -32.83558 -32.66797 -31.17194 -30.66583 -29.16164 -26.33690 -25.33693 -24.63770 -22.78365 -22.38983 -21.58519 -20.54024 -19.50317 -18.64870 -18.13468 -16.52123 -16.14425 -15.70153 -15.38513 -14.92029 -14.59583 -14.51822 -14.03299 -13.81390 -13.61929 -13.52019 -13.40490 -13.08964 -12.90056 -12.47468 -12.36107 -12.10155 -11.89431 -11.70261 -11.49375 -11.44089 -11.25918 -11.01369 -10.78478 -10.70011 -10.67958 -10.35312 -10.25050 -10.00350 -9.66656 -9.60722 -9.35938 -8.98678 -8.78107 -8.58105 -8.45869 -6.88704 -5.87733 -3.25504 0.44246 1.36532 1.74844 2.31283 3.29335 3.38774 3.42618 3.52346 3.54564 4.60574 4.69034 4.81963 5.00222 5.08387 5.11450 5.22300 5.24446 5.37739 5.47113 5.52256 5.56253 5.68166 5.75678 5.77594 5.93595 5.94324 6.02714 6.11984 6.14449 6.22764 6.24587 6.28009 6.35643 6.45448 6.49798 6.52863 6.55719 6.63304 6.68474 6.86469 7.01452 7.10832 7.68813 8.03565 8.41943 8.42727 8.99994 9.79718 10.15619 11.27818 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.014103 B = 0.004694 C = 0.003955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1984.888408 B = 5963.633514 C = 7078.555010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.071 4.071 3 C -0.022 4.022 4 C -0.143 4.143 5 C -0.232 4.232 6 S 0.184 5.816 7 C -0.260 4.260 8 C 0.583 3.417 9 O -0.509 6.509 10 N -0.722 5.722 11 C 0.128 3.872 12 H 0.094 0.906 13 C -0.117 4.117 14 C -0.127 4.127 15 C 0.169 3.831 16 H 0.029 0.971 17 C -0.137 4.137 18 N -0.597 5.597 19 C -0.261 4.261 20 H 0.093 0.907 21 C 0.030 3.970 22 N -0.906 5.906 23 Si 0.877 3.123 24 H -0.287 1.287 25 H -0.304 1.304 26 H -0.272 1.272 27 C 0.121 3.879 28 H 0.046 0.954 29 H 0.060 0.940 30 H 0.062 0.938 31 H 0.067 0.933 32 H 0.096 0.904 33 H 0.143 0.857 34 H 0.167 0.833 35 H 0.390 0.610 36 H 0.060 0.940 37 H 0.058 0.942 38 H 0.060 0.940 39 H 0.066 0.934 40 H 0.040 0.960 41 H 0.064 0.936 42 H 0.058 0.942 43 H 0.262 0.738 44 H 0.023 0.977 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.170 8.875 -11.694 20.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.111 4.111 3 C -0.037 4.037 4 C -0.175 4.175 5 C -0.370 4.370 6 S 0.452 5.548 7 C -0.381 4.381 8 C 0.368 3.632 9 O -0.386 6.386 10 N -0.373 5.373 11 C 0.022 3.978 12 H 0.112 0.888 13 C -0.156 4.156 14 C -0.167 4.167 15 C 0.063 3.937 16 H 0.047 0.953 17 C -0.194 4.194 18 N -0.321 5.321 19 C -0.389 4.389 20 H 0.110 0.890 21 C -0.169 4.169 22 N -0.548 5.548 23 Si 0.708 3.292 24 H -0.215 1.215 25 H -0.232 1.232 26 H -0.198 1.198 27 C -0.006 4.006 28 H 0.066 0.934 29 H 0.079 0.921 30 H 0.081 0.919 31 H 0.085 0.915 32 H 0.115 0.885 33 H 0.161 0.839 34 H 0.185 0.815 35 H 0.223 0.777 36 H 0.079 0.921 37 H 0.076 0.924 38 H 0.078 0.922 39 H 0.085 0.915 40 H 0.059 0.941 41 H 0.083 0.917 42 H 0.077 0.923 43 H 0.072 0.928 44 H 0.040 0.960 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 14.098 9.290 -10.731 20.006 hybrid contribution -0.545 0.131 -2.005 2.082 sum 13.554 9.421 -12.736 20.849 Atomic orbital electron populations 1.21618 0.94091 1.02086 1.01862 1.20427 0.96701 0.90380 1.03547 1.19574 0.96007 0.97688 0.90390 1.19925 1.03703 0.94217 0.99653 1.25181 1.08748 1.01391 1.01655 1.82897 1.60443 1.12452 0.99016 1.24579 1.16330 0.99216 0.97944 1.16935 0.78241 0.85370 0.82652 1.90865 1.44273 1.18777 1.84656 1.46034 1.67696 1.16419 1.07188 1.21808 0.97607 1.00076 0.78262 0.88779 1.21698 0.98610 0.99481 0.95773 1.22048 0.98624 1.01500 0.94496 1.20507 0.88979 0.94864 0.89387 0.95292 1.21805 1.01763 1.00947 0.94909 1.44365 1.39331 1.49626 0.98811 1.18900 0.95911 1.12741 1.11358 0.88992 1.25278 0.96429 0.96966 0.98259 1.69808 1.18507 1.25293 1.41214 0.87016 0.76325 0.84343 0.81531 1.21460 1.23248 1.19758 1.21686 0.93179 0.98202 0.87502 0.93444 0.92117 0.91897 0.91468 0.88530 0.83890 0.81547 0.77661 0.92138 0.92374 0.92156 0.91538 0.94097 0.91725 0.92330 0.92830 0.95968 0.90214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.03 9.78 37.16 0.36 -1.67 16 2 C -0.07 -0.98 5.50 -27.88 -0.15 -1.13 16 3 C -0.02 -0.30 5.16 -105.48 -0.54 -0.84 16 4 C -0.14 -1.53 9.96 -41.41 -0.41 -1.94 16 5 C -0.23 -2.18 10.92 29.18 0.32 -1.86 16 6 S 0.18 1.92 22.16 -107.50 -2.38 -0.46 16 7 C -0.26 -3.79 6.45 -36.79 -0.24 -4.03 16 8 C 0.58 10.35 7.74 -12.90 -0.10 10.25 16 9 O -0.51 -10.94 13.37 5.18 0.07 -10.87 16 10 N -0.72 -11.67 5.08 -55.03 -0.28 -11.95 16 11 C 0.13 2.37 2.61 -67.81 -0.18 2.19 16 12 H 0.09 1.98 7.57 -51.93 -0.39 1.59 16 13 C -0.12 -1.75 5.35 -26.69 -0.14 -1.90 16 14 C -0.13 -2.01 5.37 -26.61 -0.14 -2.16 16 15 C 0.17 3.26 3.49 -67.60 -0.24 3.02 16 16 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 17 C -0.14 -2.50 7.95 37.15 0.30 -2.20 16 18 N -0.60 -14.26 2.75 -164.78 -0.45 -14.71 16 19 C -0.26 -7.32 9.05 -15.06 -0.14 -7.46 16 20 H 0.09 2.70 6.40 -52.49 -0.34 2.36 16 21 C 0.03 0.89 5.24 -17.43 -0.09 0.80 16 22 N -0.91 -28.49 13.97 55.49 0.78 -27.71 16 23 Si 0.88 23.47 24.34 -169.99 -4.14 19.33 16 24 H -0.29 -7.74 6.62 56.52 0.37 -7.37 16 25 H -0.30 -8.23 7.11 56.52 0.40 -7.82 16 26 H -0.27 -7.08 6.63 56.52 0.37 -6.70 16 27 C 0.12 2.76 3.77 -3.71 -0.01 2.74 16 28 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 30 H 0.06 1.14 7.59 -51.93 -0.39 0.74 16 31 H 0.07 0.74 8.12 -51.93 -0.42 0.32 16 32 H 0.10 1.55 6.33 -51.93 -0.33 1.22 16 33 H 0.14 1.20 8.06 -52.49 -0.42 0.77 16 34 H 0.17 1.07 8.06 -52.49 -0.42 0.65 16 35 H 0.39 5.05 7.72 -40.82 -0.31 4.73 16 36 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 37 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 40 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.06 1.29 7.65 -51.93 -0.40 0.89 16 42 H 0.06 1.13 7.43 -51.93 -0.39 0.74 16 43 H 0.26 7.89 8.31 -40.82 -0.34 7.55 16 44 H 0.02 0.50 7.03 -51.93 -0.37 0.14 16 45 H 0.08 2.11 4.62 -51.93 -0.24 1.87 16 LS Contribution 360.41 15.07 5.43 5.43 Total: -1.00 -33.35 360.41 -9.38 -42.73 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: -6.99 Total: 4.39 kcal Atomic # 6 Polarization: -4.77 SS G_CDS: -1.41 Total: -6.18 kcal Atomic # 7 Polarization: -54.41 SS G_CDS: 0.04 Total: -54.37 kcal Atomic # 8 Polarization: -10.94 SS G_CDS: 0.07 Total: -10.87 kcal Atomic # 14 Polarization: 23.47 SS G_CDS: -4.14 Total: 19.33 kcal Atomic # 16 Polarization: 1.92 SS G_CDS: -2.38 Total: -0.46 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -33.35 -9.38 -42.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072099391.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.012 kcal (2) G-P(sol) polarization free energy of solvation -33.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.731 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds