Wall clock time and date at job start Tue Mar 31 2020 13:16:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50695 * 109.47353 * 2 1 4 4 C 1.37470 * 123.35305 * 265.21914 * 3 2 1 5 5 C 1.33820 * 115.10321 * 180.29701 * 4 3 2 6 6 S 1.70619 * 110.94930 * 359.72428 * 5 4 3 7 7 C 1.36654 * 123.35060 * 85.00083 * 3 2 1 8 8 C 1.46576 * 125.45643 * 0.02562 * 7 3 2 9 9 O 1.21706 * 120.00350 * 359.71497 * 8 7 3 10 10 N 1.34781 * 120.00084 * 179.72256 * 8 7 3 11 11 C 1.46501 * 120.00248 * 179.97438 * 10 8 7 12 12 H 1.09002 * 109.49271 * 34.93489 * 11 10 8 13 13 C 1.53039 * 109.49536 * 154.99560 * 11 10 8 14 14 C 1.53045 * 109.53798 * 181.31673 * 13 11 10 15 15 C 1.53193 * 109.31187 * 298.63851 * 14 13 11 16 16 H 1.08998 * 109.58703 * 294.84680 * 15 14 13 17 17 C 1.52993 * 109.58601 * 174.56189 * 15 14 13 18 18 N 1.46933 * 108.77640 * 54.63006 * 15 14 13 19 19 C 1.36942 * 120.62589 * 126.41465 * 18 15 14 20 20 H 1.07997 * 120.00273 * 330.89585 * 19 18 15 21 21 C 1.38814 * 119.99561 * 150.90025 * 19 18 15 22 22 N 1.31611 * 120.00134 * 160.71242 * 21 19 18 23 23 Si 1.86803 * 119.99939 * 340.70236 * 21 19 18 24 24 H 1.48501 * 109.46604 * 92.32861 * 23 21 19 25 25 H 1.48495 * 109.47098 * 212.32476 * 23 21 19 26 26 H 1.48496 * 109.47343 * 332.32866 * 23 21 19 27 27 C 1.46921 * 118.74122 * 306.39488 * 18 15 14 28 28 H 1.08996 * 109.46689 * 59.99371 * 1 2 3 29 29 H 1.08997 * 109.47059 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46613 * 300.00339 * 1 2 3 31 31 H 1.09006 * 109.47201 * 239.99603 * 2 1 3 32 32 H 1.09005 * 109.47098 * 120.00218 * 2 1 3 33 33 H 1.08000 * 122.45157 * 0.02562 * 4 3 2 34 34 H 1.07990 * 124.52605 * 179.70831 * 5 4 3 35 35 H 0.96997 * 119.99601 * 359.97438 * 10 8 7 36 36 H 1.09000 * 109.46324 * 61.29925 * 13 11 10 37 37 H 1.09000 * 109.45271 * 301.32792 * 13 11 10 38 38 H 1.08991 * 109.49862 * 178.68305 * 14 13 11 39 39 H 1.08999 * 109.49421 * 58.58466 * 14 13 11 40 40 H 1.08996 * 109.47327 * 60.28639 * 17 15 14 41 41 H 1.09004 * 109.46800 * 180.28038 * 17 15 14 42 42 H 1.09000 * 109.47505 * 300.28185 * 17 15 14 43 43 H 0.96998 * 120.00155 * 179.97438 * 22 21 19 44 44 H 1.09005 * 109.58547 * 293.81894 * 27 18 15 45 45 H 1.08994 * 109.70520 * 173.46411 * 27 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.3746 2.1014 -1.1443 5 6 2.8069 3.3532 -0.9524 6 16 2.8000 3.7536 0.7061 7 6 2.1891 2.1622 1.1372 8 6 1.9007 1.7021 2.4986 9 8 1.4799 0.5752 2.6839 10 7 2.1012 2.5271 3.5454 11 6 1.8124 2.0675 4.9062 12 1 2.0519 1.0075 4.9906 13 6 2.6571 2.8631 5.9040 14 6 2.3805 2.3614 7.3232 15 6 0.9018 2.5803 7.6587 16 1 0.6875 3.6486 7.6858 17 6 0.5877 1.9594 9.0213 18 7 0.0817 1.9396 6.6215 19 6 -0.8935 1.0398 6.9601 20 1 -0.7903 0.4424 7.8538 21 6 -2.0147 0.8954 6.1544 22 7 -2.7522 -0.1911 6.2415 23 14 -2.4767 2.2436 4.9467 24 1 -1.8589 1.9587 3.6268 25 1 -3.9538 2.2931 4.8015 26 1 -1.9849 3.5505 5.4518 27 6 0.3274 2.2830 5.2142 28 1 -0.3632 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3632 0.5139 0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 2.3041 1.6569 -2.1260 34 1 3.1188 4.0208 -1.7419 35 1 2.4368 3.4252 3.3978 36 1 2.3998 3.9201 5.8360 37 1 3.7138 2.7309 5.6717 38 1 2.9996 2.9124 8.0310 39 1 2.6141 1.2986 7.3853 40 1 1.2025 2.4329 9.7867 41 1 -0.4658 2.1119 9.2558 42 1 0.8026 0.8912 8.9921 43 1 -3.5358 -0.2918 5.6788 44 1 0.0662 3.3272 5.0420 45 1 -0.2760 1.6444 4.5693 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001072099391.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:16:55 Heat of formation + Delta-G solvation = -11.576582 kcal Electronic energy + Delta-G solvation = -26036.943260 eV Core-core repulsion = 22566.392450 eV Total energy + Delta-G solvation = -3470.550810 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.25383 -39.81923 -38.73517 -36.13642 -34.69641 -33.73250 -32.62205 -32.60307 -30.24890 -27.89999 -26.88003 -26.03006 -24.50153 -23.40509 -22.83178 -22.00728 -21.13083 -19.85634 -19.13188 -18.50518 -17.65275 -16.94524 -16.77100 -16.48303 -16.14371 -15.87520 -15.34983 -15.18700 -15.10793 -14.86225 -14.69452 -14.56442 -14.35696 -13.92661 -13.82146 -13.47688 -13.32916 -13.05406 -12.91326 -12.73069 -12.56497 -12.54121 -12.46533 -12.14454 -12.02925 -11.77748 -11.76367 -11.70216 -11.42135 -11.34550 -10.94192 -10.79306 -10.27862 -9.78749 -9.41652 -8.88694 -8.18567 -5.49672 -0.51093 0.47573 0.91044 1.23885 1.26740 1.36375 1.38865 2.00129 2.14103 2.37948 3.04894 3.31520 3.70716 3.84091 3.85925 3.99764 4.08119 4.12375 4.24200 4.27700 4.35980 4.40129 4.45437 4.57083 4.65298 4.68315 4.79590 4.80442 4.85257 4.94415 5.00273 5.03242 5.03566 5.07665 5.14025 5.21586 5.24994 5.34104 5.41071 5.50295 5.50360 5.62891 5.89325 6.16733 6.43561 6.90969 7.14437 7.63091 8.02507 9.01042 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.014103 B = 0.004694 C = 0.003955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1984.888408 B = 5963.633514 C = 7078.555010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.072 4.072 3 C -0.025 4.025 4 C -0.157 4.157 5 C -0.210 4.210 6 S 0.235 5.765 7 C -0.312 4.312 8 C 0.575 3.425 9 O -0.563 6.563 10 N -0.712 5.712 11 C 0.139 3.861 12 H 0.058 0.942 13 C -0.108 4.108 14 C -0.119 4.119 15 C 0.156 3.844 16 H 0.046 0.954 17 C -0.131 4.131 18 N -0.613 5.613 19 C -0.235 4.235 20 H 0.070 0.930 21 C -0.033 4.033 22 N -0.955 5.955 23 Si 0.937 3.063 24 H -0.301 1.301 25 H -0.310 1.310 26 H -0.254 1.254 27 C 0.121 3.879 28 H 0.070 0.930 29 H 0.062 0.938 30 H 0.016 0.984 31 H 0.099 0.901 32 H 0.063 0.937 33 H 0.170 0.830 34 H 0.207 0.793 35 H 0.409 0.591 36 H 0.084 0.916 37 H 0.090 0.910 38 H 0.105 0.895 39 H 0.049 0.951 40 H 0.085 0.915 41 H 0.038 0.962 42 H 0.037 0.963 43 H 0.258 0.742 44 H 0.031 0.969 45 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.444 12.794 -13.429 25.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.111 4.111 3 C -0.041 4.041 4 C -0.187 4.187 5 C -0.347 4.347 6 S 0.504 5.496 7 C -0.432 4.432 8 C 0.363 3.637 9 O -0.443 6.443 10 N -0.364 5.364 11 C 0.033 3.967 12 H 0.077 0.923 13 C -0.146 4.146 14 C -0.159 4.159 15 C 0.052 3.948 16 H 0.064 0.936 17 C -0.189 4.189 18 N -0.338 5.338 19 C -0.365 4.365 20 H 0.087 0.913 21 C -0.227 4.227 22 N -0.602 5.602 23 Si 0.768 3.232 24 H -0.230 1.230 25 H -0.239 1.239 26 H -0.178 1.178 27 C -0.005 4.005 28 H 0.089 0.911 29 H 0.081 0.919 30 H 0.036 0.964 31 H 0.117 0.883 32 H 0.082 0.918 33 H 0.187 0.813 34 H 0.224 0.776 35 H 0.246 0.754 36 H 0.103 0.897 37 H 0.108 0.892 38 H 0.123 0.877 39 H 0.068 0.932 40 H 0.104 0.896 41 H 0.057 0.943 42 H 0.056 0.944 43 H 0.067 0.933 44 H 0.049 0.951 45 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 17.437 13.299 -12.454 25.220 hybrid contribution -1.451 -1.069 -1.474 2.328 sum 15.986 12.231 -13.928 24.477 Atomic orbital electron populations 1.21560 0.95119 1.01872 1.00602 1.20374 0.95796 0.91482 1.03415 1.19798 0.95518 0.97360 0.91454 1.20077 1.04330 0.94704 0.99632 1.25728 1.05792 1.01184 1.02012 1.82636 1.58735 1.08748 0.99507 1.24422 1.19829 1.02593 0.96341 1.17521 0.77081 0.84800 0.84255 1.90838 1.46624 1.21145 1.85738 1.45832 1.67327 1.17198 1.06041 1.21416 0.95429 0.99223 0.80681 0.92336 1.21697 0.99523 0.99811 0.93593 1.21971 0.96304 1.01383 0.96205 1.20898 0.90460 0.95177 0.88236 0.93603 1.21753 1.01039 1.00118 0.95968 1.44567 1.39105 1.49588 1.00537 1.18922 0.96115 1.11956 1.09494 0.91274 1.25853 0.97305 0.98788 1.00792 1.69930 1.19625 1.27275 1.43399 0.86044 0.75287 0.82784 0.79121 1.22965 1.23859 1.17816 1.21593 0.95563 0.97215 0.86159 0.91093 0.91934 0.96438 0.88276 0.91846 0.81255 0.77630 0.75446 0.89712 0.89152 0.87703 0.93187 0.89613 0.94279 0.94376 0.93348 0.95098 0.94840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.10 9.78 71.98 0.70 -3.40 16 2 C -0.07 -2.01 5.50 29.85 0.16 -1.85 16 3 C -0.03 -0.66 5.16 -20.42 -0.11 -0.76 16 4 C -0.16 -2.80 9.96 21.08 0.21 -2.59 16 5 C -0.21 -2.94 10.92 66.82 0.73 -2.21 16 6 S 0.24 4.12 22.16 -56.49 -1.25 2.87 16 7 C -0.31 -8.90 6.45 24.08 0.16 -8.75 16 8 C 0.58 21.16 7.74 86.42 0.67 21.83 16 9 O -0.56 -26.25 13.37 -4.37 -0.06 -26.31 16 10 N -0.71 -22.67 5.08 -446.22 -2.26 -24.93 16 11 C 0.14 5.12 2.61 45.07 0.12 5.23 16 12 H 0.06 2.59 7.57 -2.39 -0.02 2.57 16 13 C -0.11 -2.85 5.35 30.62 0.16 -2.69 16 14 C -0.12 -3.39 5.37 30.67 0.16 -3.23 16 15 C 0.16 5.75 3.49 44.97 0.16 5.90 16 16 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 17 C -0.13 -4.67 7.95 71.98 0.57 -4.09 16 18 N -0.61 -29.60 2.75 -675.24 -1.86 -31.46 16 19 C -0.24 -13.77 9.05 84.03 0.76 -13.01 16 20 H 0.07 4.30 6.40 -2.91 -0.02 4.28 16 21 C -0.03 -2.05 5.24 84.86 0.44 -1.61 16 22 N -0.96 -63.84 13.97 21.65 0.30 -63.54 16 23 Si 0.94 51.21 24.34 68.60 1.67 52.88 16 24 H -0.30 -16.98 6.62 99.48 0.66 -16.32 16 25 H -0.31 -16.96 7.11 99.48 0.71 -16.25 16 26 H -0.25 -12.88 6.63 99.48 0.66 -12.22 16 27 C 0.12 5.59 3.77 86.36 0.33 5.92 16 28 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 29 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 30 H 0.02 0.66 7.59 -2.39 -0.02 0.64 16 31 H 0.10 2.07 8.12 -2.38 -0.02 2.05 16 32 H 0.06 2.21 6.33 -2.38 -0.02 2.20 16 33 H 0.17 2.08 8.06 -2.91 -0.02 2.06 16 34 H 0.21 1.29 8.06 -2.92 -0.02 1.27 16 35 H 0.41 9.65 7.72 -92.71 -0.72 8.93 16 36 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 37 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 38 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16 39 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 40 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 41 H 0.04 1.55 7.65 -2.38 -0.02 1.54 16 42 H 0.04 1.48 7.43 -2.39 -0.02 1.46 16 43 H 0.26 16.55 8.31 -92.71 -0.77 15.78 16 44 H 0.03 1.37 7.03 -2.38 -0.02 1.35 16 45 H 0.03 1.86 4.62 -2.39 -0.01 1.85 16 Total: -1.00 -81.75 360.41 1.96 -79.79 By element: Atomic # 1 Polarization: 15.83 SS G_CDS: 0.18 Total: 16.02 kcal Atomic # 6 Polarization: -10.55 SS G_CDS: 5.23 Total: -5.32 kcal Atomic # 7 Polarization: -116.11 SS G_CDS: -3.82 Total: -119.93 kcal Atomic # 8 Polarization: -26.25 SS G_CDS: -0.06 Total: -26.31 kcal Atomic # 14 Polarization: 51.21 SS G_CDS: 1.67 Total: 52.88 kcal Atomic # 16 Polarization: 4.12 SS G_CDS: -1.25 Total: 2.87 kcal Total: -81.75 1.96 -79.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072099391.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.212 kcal (2) G-P(sol) polarization free energy of solvation -81.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds