Wall clock time and date at job start Tue Mar 31 2020 13:10:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50696 * 109.47447 * 2 1 4 4 S 1.70618 * 124.52410 * 270.02314 * 3 2 1 5 5 C 1.75829 * 91.56509 * 179.73401 * 4 3 2 6 6 C 1.46584 * 125.45722 * 180.02562 * 5 4 3 7 7 O 1.21697 * 119.99665 * 179.97438 * 6 5 4 8 8 N 1.34774 * 119.99693 * 359.96865 * 6 5 4 9 9 C 1.46503 * 119.99507 * 180.02562 * 8 6 5 10 10 H 1.08994 * 110.89034 * 34.29900 * 9 8 6 11 11 C 1.54908 * 111.00371 * 270.41524 * 9 8 6 12 12 N 1.47466 * 104.81199 * 204.94940 * 11 9 8 13 13 C 1.36946 * 125.63030 * 204.14077 * 12 11 9 14 14 H 1.07997 * 119.99512 * 161.43157 * 13 12 11 15 15 C 1.38806 * 119.99876 * 341.42901 * 13 12 11 16 16 N 1.31618 * 120.00099 * 157.64819 * 15 13 12 17 17 Si 1.86803 * 120.00333 * 337.64665 * 15 13 12 18 18 H 1.48506 * 109.47087 * 84.53091 * 17 15 13 19 19 H 1.48495 * 109.47534 * 204.53478 * 17 15 13 20 20 H 1.48509 * 109.46959 * 324.53726 * 17 15 13 21 21 C 1.47020 * 108.72446 * 24.07522 * 12 11 9 22 22 C 1.54332 * 107.26897 * 358.97327 * 21 12 11 23 23 H 1.08996 * 110.87223 * 96.24375 * 22 21 12 24 24 C 1.53004 * 110.71895 * 219.44806 * 22 21 12 25 25 C 1.36645 * 109.08469 * 359.97438 * 5 4 3 26 26 C 1.33823 * 124.52525 * 89.71836 * 3 2 1 27 27 C 1.50700 * 122.44619 * 0.24962 * 26 3 2 28 28 H 1.08999 * 109.47177 * 300.00699 * 1 2 3 29 29 H 1.09005 * 109.46819 * 60.00001 * 1 2 3 30 30 H 1.08996 * 109.46958 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47659 * 239.99467 * 2 1 3 32 32 H 1.09005 * 109.46819 * 119.99999 * 2 1 3 33 33 H 0.96993 * 120.00766 * 0.02562 * 8 6 5 34 34 H 1.08996 * 110.37287 * 323.76094 * 11 9 8 35 35 H 1.09008 * 110.36412 * 86.08360 * 11 9 8 36 36 H 0.97001 * 120.00211 * 180.02562 * 16 15 13 37 37 H 1.08996 * 109.88261 * 239.55838 * 21 12 11 38 38 H 1.08999 * 109.88631 * 118.38775 * 21 12 11 39 39 H 1.08994 * 109.46910 * 173.52294 * 24 22 21 40 40 H 1.09001 * 109.46770 * 293.52021 * 24 22 21 41 41 H 1.08997 * 109.46964 * 53.51709 * 24 22 21 42 42 H 1.07995 * 123.35240 * 179.97438 * 25 5 4 43 43 H 1.08993 * 109.47714 * 89.99589 * 27 26 3 44 44 H 1.08999 * 109.46791 * 210.00068 * 27 26 3 45 45 H 1.09003 * 109.47093 * 329.99497 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 16 2.3542 2.3326 -1.4057 5 6 2.8388 3.7261 -0.4491 6 6 3.2889 5.0127 -0.9884 7 8 3.6013 5.9135 -0.2321 8 7 3.3568 5.1978 -2.3216 9 6 3.8072 6.4835 -2.8605 10 1 4.5688 6.9281 -2.2199 11 6 2.6140 7.4513 -3.0583 12 7 3.0557 8.3841 -4.1116 13 6 2.5770 9.6524 -4.3061 14 1 3.1467 10.3609 -4.8890 15 6 1.3597 10.0269 -3.7542 16 7 1.0943 11.2995 -3.5482 17 14 0.0981 8.7250 -3.3039 18 1 0.3976 8.1928 -1.9502 19 1 -1.2590 9.3277 -3.3097 20 1 0.1530 7.6192 -4.2937 21 6 4.0960 7.7280 -4.9171 22 6 4.3261 6.3261 -4.3143 23 1 3.7484 5.5732 -4.8505 24 6 5.8143 5.9709 -4.3224 25 6 2.7274 3.4179 0.8774 26 6 2.2802 2.1376 1.1025 27 6 2.0824 1.5823 2.4894 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 3.1075 4.4800 -2.9243 34 1 1.7304 6.9026 -3.3841 35 1 2.4067 7.9918 -2.1346 36 1 0.2438 11.5613 -3.1622 37 1 5.0188 8.3064 -4.8730 38 1 3.7621 7.6369 -5.9507 39 1 5.9665 5.0317 -3.7907 40 1 6.1570 5.8654 -5.3517 41 1 6.3794 6.7627 -3.8307 42 1 2.9678 4.1108 1.6702 43 1 3.0047 1.1092 2.8264 44 1 1.8192 2.3914 3.1706 45 1 1.2801 0.8445 2.4744 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001080905753.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:10:50 Heat of formation + Delta-G solvation = -16.099217 kcal Electronic energy + Delta-G solvation = -25014.701892 eV Core-core repulsion = 21543.954966 eV Total energy + Delta-G solvation = -3470.746926 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.26621 -39.87012 -39.09823 -35.82601 -34.79170 -34.41801 -32.87608 -31.46298 -29.85884 -28.34999 -27.81506 -26.15866 -24.68815 -23.37451 -22.72989 -21.97784 -21.25791 -19.69581 -19.07039 -18.93638 -17.88044 -17.23135 -17.05911 -16.32428 -16.08377 -15.77950 -15.34916 -15.21573 -15.17825 -14.79064 -14.68156 -14.42362 -14.15510 -13.98897 -13.66493 -13.47222 -13.28594 -13.22099 -13.12576 -13.04463 -12.85349 -12.67697 -12.33487 -12.26815 -12.20149 -12.09400 -11.90783 -11.69389 -11.65214 -11.55029 -11.29876 -10.91925 -10.31920 -9.69755 -9.36880 -9.13432 -8.25892 -5.51871 -0.58928 0.39626 0.84073 1.23678 1.25311 1.26187 1.35371 1.86560 2.04816 2.33710 2.96649 3.28334 3.41591 3.66199 3.74424 3.75985 3.92117 4.06926 4.15997 4.19339 4.38655 4.40427 4.42726 4.48035 4.50346 4.68360 4.75319 4.80551 4.83636 4.86055 4.91220 4.96485 4.99375 5.03840 5.05469 5.11382 5.16767 5.28290 5.28820 5.39296 5.45240 5.51757 5.61312 6.03631 6.30248 6.67218 6.98376 7.45911 8.01872 8.93851 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.015596 B = 0.003548 C = 0.003257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1794.866346 B = 7890.240064 C = 8595.434236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.055 4.055 3 C -0.184 4.184 4 S 0.236 5.764 5 C -0.302 4.302 6 C 0.585 3.415 7 O -0.575 6.575 8 N -0.702 5.702 9 C 0.148 3.852 10 H 0.086 0.914 11 C 0.103 3.897 12 N -0.625 5.625 13 C -0.233 4.233 14 H 0.069 0.931 15 C -0.033 4.033 16 N -0.951 5.951 17 Si 0.938 3.062 18 H -0.292 1.292 19 H -0.301 1.301 20 H -0.260 1.260 21 C 0.133 3.867 22 C -0.093 4.093 23 H 0.106 0.894 24 C -0.132 4.132 25 C -0.052 4.052 26 C -0.134 4.134 27 C -0.092 4.092 28 H 0.055 0.945 29 H 0.049 0.951 30 H 0.081 0.919 31 H 0.089 0.911 32 H 0.102 0.898 33 H 0.411 0.589 34 H 0.027 0.973 35 H 0.021 0.979 36 H 0.263 0.737 37 H 0.041 0.959 38 H 0.046 0.954 39 H 0.070 0.930 40 H 0.083 0.917 41 H 0.049 0.951 42 H 0.141 0.859 43 H 0.081 0.919 44 H 0.066 0.934 45 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.622 -31.631 5.664 32.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.094 4.094 3 C -0.304 4.304 4 S 0.507 5.493 5 C -0.422 4.422 6 C 0.373 3.627 7 O -0.456 6.456 8 N -0.353 5.353 9 C 0.042 3.958 10 H 0.104 0.896 11 C -0.023 4.023 12 N -0.352 5.352 13 C -0.362 4.362 14 H 0.087 0.913 15 C -0.228 4.228 16 N -0.598 5.598 17 Si 0.768 3.232 18 H -0.220 1.220 19 H -0.229 1.229 20 H -0.185 1.185 21 C 0.009 3.991 22 C -0.112 4.112 23 H 0.124 0.876 24 C -0.189 4.189 25 C -0.086 4.086 26 C -0.145 4.145 27 C -0.150 4.150 28 H 0.074 0.926 29 H 0.069 0.931 30 H 0.100 0.900 31 H 0.108 0.892 32 H 0.120 0.880 33 H 0.249 0.751 34 H 0.045 0.955 35 H 0.039 0.961 36 H 0.072 0.928 37 H 0.060 0.940 38 H 0.064 0.936 39 H 0.089 0.911 40 H 0.101 0.899 41 H 0.068 0.932 42 H 0.159 0.841 43 H 0.100 0.900 44 H 0.085 0.915 45 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 3.636 -31.088 4.573 31.632 hybrid contribution -0.971 0.776 1.684 2.093 sum 2.665 -30.312 6.257 31.066 Atomic orbital electron populations 1.21815 0.93626 1.03183 1.02130 1.20306 0.96554 0.87476 1.05043 1.24535 1.06130 1.03161 0.96616 1.82636 1.59503 1.00086 1.07120 1.24338 1.19055 0.99508 0.99293 1.17439 0.76659 0.86238 0.82325 1.90824 1.51149 1.44580 1.59030 1.45615 1.67831 1.15752 1.06122 1.22034 0.95071 0.82640 0.96101 0.89560 1.22250 0.96576 0.92113 0.91380 1.44771 1.45443 1.12801 1.32217 1.18642 1.01066 0.86188 1.30265 0.91282 1.25572 0.99543 0.97196 1.00519 1.69950 1.24866 1.16693 1.48311 0.86069 0.79101 0.80065 0.78010 1.21983 1.22866 1.18523 1.21696 0.91271 0.91593 0.94557 1.22456 0.99422 0.97176 0.92163 0.87570 1.21719 0.91930 1.01739 1.03510 1.20803 0.96206 0.96756 0.94842 1.18836 1.04513 0.92924 0.98275 1.20575 1.03225 1.01383 0.89857 0.92598 0.93150 0.90004 0.89231 0.87988 0.75132 0.95507 0.96070 0.92818 0.94042 0.93578 0.91110 0.89850 0.93153 0.84127 0.90043 0.91485 0.89772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 9.89 71.98 0.71 -0.62 16 2 C -0.05 -0.50 5.72 29.85 0.17 -0.33 16 3 C -0.18 -2.89 5.53 24.68 0.14 -2.75 16 4 S 0.24 4.21 22.10 -56.49 -1.25 2.96 16 5 C -0.30 -8.11 6.45 24.08 0.16 -7.95 16 6 C 0.59 20.08 7.78 86.42 0.67 20.75 16 7 O -0.57 -25.11 16.53 -4.34 -0.07 -25.19 16 8 N -0.70 -21.26 5.21 -440.00 -2.29 -23.56 16 9 C 0.15 5.30 2.81 46.38 0.13 5.43 16 10 H 0.09 3.45 7.54 -2.39 -0.02 3.43 16 11 C 0.10 4.85 4.39 86.85 0.38 5.23 16 12 N -0.63 -31.40 3.21 -691.87 -2.22 -33.61 16 13 C -0.23 -13.99 10.57 84.03 0.89 -13.10 16 14 H 0.07 4.39 8.06 -2.91 -0.02 4.36 16 15 C -0.03 -2.08 5.43 84.86 0.46 -1.62 16 16 N -0.95 -62.72 13.97 21.65 0.30 -62.42 16 17 Si 0.94 50.36 24.27 68.60 1.66 52.02 16 18 H -0.29 -15.95 6.49 99.48 0.65 -15.31 16 19 H -0.30 -15.94 7.11 99.48 0.71 -15.23 16 20 H -0.26 -13.07 6.66 99.48 0.66 -12.40 16 21 C 0.13 5.02 6.84 86.73 0.59 5.62 16 22 C -0.09 -2.64 3.19 -9.60 -0.03 -2.67 16 23 H 0.11 2.48 7.99 -2.39 -0.02 2.46 16 24 C -0.13 -2.82 9.16 71.98 0.66 -2.16 16 25 C -0.05 -1.28 9.80 21.72 0.21 -1.07 16 26 C -0.13 -2.44 5.78 -21.05 -0.12 -2.56 16 27 C -0.09 -1.13 9.56 71.24 0.68 -0.44 16 28 H 0.05 0.56 7.79 -2.39 -0.02 0.54 16 29 H 0.05 0.54 8.14 -2.38 -0.02 0.52 16 30 H 0.08 0.45 8.14 -2.39 -0.02 0.43 16 31 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.10 0.64 7.26 -2.38 -0.02 0.62 16 33 H 0.41 9.43 7.65 -92.71 -0.71 8.72 16 34 H 0.03 1.28 5.57 -2.39 -0.01 1.26 16 35 H 0.02 1.16 6.64 -2.38 -0.02 1.15 16 36 H 0.26 16.48 8.31 -92.71 -0.77 15.71 16 37 H 0.04 1.55 7.76 -2.39 -0.02 1.53 16 38 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 39 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 40 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 41 H 0.05 1.20 8.06 -2.39 -0.02 1.18 16 42 H 0.14 3.69 8.06 -2.91 -0.02 3.67 16 43 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 44 H 0.07 0.86 8.13 -2.39 -0.02 0.84 16 45 H 0.08 0.75 6.84 -2.39 -0.02 0.73 16 Total: -1.00 -80.12 371.10 2.01 -78.11 By element: Atomic # 1 Polarization: 9.76 SS G_CDS: 0.18 Total: 9.93 kcal Atomic # 6 Polarization: -3.94 SS G_CDS: 5.70 Total: 1.76 kcal Atomic # 7 Polarization: -115.38 SS G_CDS: -4.21 Total: -119.59 kcal Atomic # 8 Polarization: -25.11 SS G_CDS: -0.07 Total: -25.19 kcal Atomic # 14 Polarization: 50.36 SS G_CDS: 1.66 Total: 52.02 kcal Atomic # 16 Polarization: 4.21 SS G_CDS: -1.25 Total: 2.96 kcal Total: -80.12 2.01 -78.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080905753.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.008 kcal (2) G-P(sol) polarization free energy of solvation -80.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds