Wall clock time and date at job start Tue Mar 31 2020 13:13:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50706 * 109.47036 * 2 1 4 4 C 1.37464 * 122.45119 * 264.97629 * 3 2 1 5 5 C 1.36649 * 113.30007 * 180.02562 * 4 3 2 6 6 C 1.46584 * 125.46272 * 179.97438 * 5 4 3 7 7 O 1.21704 * 119.99485 * 359.97438 * 6 5 4 8 8 N 1.34772 * 119.99989 * 180.02562 * 6 5 4 9 9 C 1.46508 * 119.99860 * 180.02562 * 8 6 5 10 10 H 1.08998 * 110.88306 * 37.42199 * 9 8 6 11 11 C 1.54913 * 111.00104 * 273.54380 * 9 8 6 12 12 N 1.47424 * 104.82792 * 204.87751 * 11 9 8 13 13 C 1.36938 * 125.64355 * 203.86074 * 12 11 9 14 14 H 1.07997 * 119.99870 * 161.52651 * 13 12 11 15 15 C 1.38813 * 120.00393 * 341.52649 * 13 12 11 16 16 N 1.31613 * 120.00026 * 157.52879 * 15 13 12 17 17 Si 1.86799 * 119.99872 * 337.53315 * 15 13 12 18 18 H 1.48500 * 109.47046 * 84.53269 * 17 15 13 19 19 H 1.48499 * 109.47121 * 204.53230 * 17 15 13 20 20 H 1.48503 * 109.46914 * 324.53237 * 17 15 13 21 21 C 1.47016 * 108.70430 * 24.12932 * 12 11 9 22 22 C 1.54319 * 107.27417 * 358.93880 * 21 12 11 23 23 H 1.09005 * 110.87056 * 96.23768 * 22 21 12 24 24 C 1.52998 * 110.72305 * 219.44449 * 22 21 12 25 25 S 1.75839 * 109.08044 * 0.22383 * 5 4 3 26 26 C 1.33820 * 122.44686 * 84.99778 * 3 2 1 27 27 C 1.50698 * 124.52314 * 359.97438 * 26 3 2 28 28 H 1.09001 * 109.47174 * 59.99747 * 1 2 3 29 29 H 1.08995 * 109.46982 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47401 * 300.00508 * 1 2 3 31 31 H 1.08998 * 109.47325 * 240.00271 * 2 1 3 32 32 H 1.08995 * 109.46830 * 119.99616 * 2 1 3 33 33 H 1.08006 * 123.35339 * 0.04214 * 4 3 2 34 34 H 0.96999 * 120.00250 * 359.97438 * 8 6 5 35 35 H 1.08999 * 110.36761 * 86.03775 * 11 9 8 36 36 H 1.08994 * 110.46036 * 323.76648 * 11 9 8 37 37 H 0.97008 * 119.99978 * 180.02562 * 16 15 13 38 38 H 1.09001 * 109.88017 * 118.35603 * 21 12 11 39 39 H 1.09000 * 109.87989 * 239.51674 * 21 12 11 40 40 H 1.09001 * 109.47433 * 173.52274 * 24 22 21 41 41 H 1.09000 * 109.46980 * 293.52172 * 24 22 21 42 42 H 1.09005 * 109.47101 * 53.52117 * 24 22 21 43 43 H 1.08995 * 109.47157 * 90.00255 * 27 26 3 44 44 H 1.09000 * 109.47053 * 210.00473 * 27 26 3 45 45 H 1.09000 * 109.47087 * 329.99831 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3740 2.0824 -1.1555 5 6 2.8062 3.3605 -0.9390 6 6 3.2362 4.3005 -1.9784 7 8 3.2259 3.9615 -3.1472 8 7 3.6438 5.5396 -1.6396 9 6 4.0729 6.4792 -2.6785 10 1 3.4600 6.3751 -3.5738 11 6 5.5749 6.2933 -3.0091 12 7 6.0077 7.5972 -3.5439 13 6 7.0755 7.8037 -4.3760 14 1 7.1449 8.7166 -4.9489 15 6 8.0686 6.8398 -4.4833 16 7 8.8344 6.8002 -5.5529 17 14 8.3179 5.5988 -3.1096 18 1 7.3796 4.4624 -3.2927 19 1 9.7152 5.0973 -3.1431 20 1 8.0570 6.2501 -1.8007 21 6 5.1071 8.6397 -3.0307 22 6 4.0478 7.9392 -2.1539 23 1 4.3291 7.9757 -1.1014 24 6 2.6687 8.5669 -2.3658 25 16 2.7709 3.6946 0.7870 26 6 2.1788 2.1306 1.1250 27 6 1.8678 1.6153 2.5065 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.3071 1.6366 -2.1370 34 1 3.6523 5.8096 -0.7080 35 1 5.7044 5.5135 -3.7596 36 1 6.1359 6.0479 -2.1075 37 1 9.5282 6.1263 -5.6280 38 1 5.6709 9.3543 -2.4310 39 1 4.6212 9.1516 -3.8613 40 1 1.9189 7.9866 -1.8280 41 1 2.6738 9.5903 -1.9908 42 1 2.4308 8.5709 -3.4295 43 1 2.7578 1.1495 2.9295 44 1 1.5548 2.4441 3.1415 45 1 1.0656 0.8796 2.4478 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001080909094.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:13:46 Heat of formation + Delta-G solvation = 7.633595 kcal Electronic energy + Delta-G solvation = -25019.041502 eV Core-core repulsion = 21549.323708 eV Total energy + Delta-G solvation = -3469.717794 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.93899 -38.91685 -37.69990 -34.13736 -33.18291 -32.68307 -31.81573 -31.01461 -28.61630 -26.95834 -26.14670 -24.22800 -24.01823 -22.72665 -20.99282 -20.55151 -19.86237 -18.74092 -17.97707 -16.96153 -16.52452 -15.99925 -15.35960 -15.01117 -14.85880 -14.51915 -14.28633 -14.12340 -13.74723 -13.46636 -13.37660 -13.13434 -13.03483 -12.97654 -12.69874 -12.34330 -12.23741 -12.01043 -11.87083 -11.81475 -11.69595 -11.30294 -11.24712 -11.13879 -10.93289 -10.68135 -10.43194 -10.28411 -9.97796 -9.93335 -9.43731 -8.94330 -8.78260 -8.64163 -8.55777 -7.02845 -5.92063 -3.22582 0.34629 1.25501 1.66703 2.17646 3.15802 3.26443 3.42428 3.50676 3.52484 4.45130 4.56761 4.59520 4.72923 4.78549 4.89565 4.93367 5.03976 5.05556 5.14346 5.17037 5.23138 5.29947 5.34437 5.48606 5.52044 5.57751 5.61927 5.70638 5.74171 5.77731 5.88339 5.91016 5.97461 6.11250 6.13160 6.23824 6.26386 6.39935 6.54501 6.65889 6.76749 6.80424 7.54918 7.72513 8.25742 8.33933 8.85367 9.71623 10.18814 11.23933 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.016479 B = 0.003484 C = 0.003199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1698.707167 B = 8035.240964 C = 8750.993656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.063 4.063 3 C -0.118 4.118 4 C -0.049 4.049 5 C -0.258 4.258 6 C 0.587 3.413 7 O -0.521 6.521 8 N -0.714 5.714 9 C 0.136 3.864 10 H 0.103 0.897 11 C 0.105 3.895 12 N -0.607 5.607 13 C -0.243 4.243 14 H 0.094 0.906 15 C 0.025 3.975 16 N -0.906 5.906 17 Si 0.879 3.121 18 H -0.284 1.284 19 H -0.301 1.301 20 H -0.278 1.278 21 C 0.142 3.858 22 C -0.112 4.112 23 H 0.078 0.922 24 C -0.138 4.138 25 S 0.191 5.809 26 C -0.198 4.198 27 C -0.085 4.085 28 H 0.057 0.943 29 H 0.058 0.942 30 H 0.054 0.946 31 H 0.074 0.926 32 H 0.072 0.928 33 H 0.153 0.847 34 H 0.394 0.606 35 H 0.065 0.935 36 H 0.027 0.973 37 H 0.263 0.737 38 H 0.034 0.966 39 H 0.039 0.961 40 H 0.051 0.949 41 H 0.057 0.943 42 H 0.060 0.940 43 H 0.077 0.923 44 H 0.069 0.931 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.713 -9.396 18.308 27.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.103 4.103 3 C -0.131 4.131 4 C -0.081 4.081 5 C -0.378 4.378 6 C 0.373 3.627 7 O -0.399 6.399 8 N -0.365 5.365 9 C 0.031 3.969 10 H 0.121 0.879 11 C -0.021 4.021 12 N -0.334 5.334 13 C -0.370 4.370 14 H 0.112 0.888 15 C -0.174 4.174 16 N -0.550 5.550 17 Si 0.709 3.291 18 H -0.210 1.210 19 H -0.229 1.229 20 H -0.204 1.204 21 C 0.016 3.984 22 C -0.131 4.131 23 H 0.096 0.904 24 C -0.196 4.196 25 S 0.460 5.540 26 C -0.318 4.318 27 C -0.143 4.143 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.093 0.907 32 H 0.090 0.910 33 H 0.170 0.830 34 H 0.228 0.772 35 H 0.083 0.917 36 H 0.044 0.956 37 H 0.073 0.927 38 H 0.052 0.948 39 H 0.057 0.943 40 H 0.071 0.929 41 H 0.076 0.924 42 H 0.079 0.921 43 H 0.095 0.905 44 H 0.088 0.912 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -18.110 -8.363 18.193 26.998 hybrid contribution 0.082 -1.881 0.404 1.925 sum -18.028 -10.243 18.596 27.853 Atomic orbital electron populations 1.21752 0.94771 1.01667 1.02285 1.20244 0.95971 0.91112 1.02974 1.18645 1.04700 0.98457 0.91313 1.20627 0.95844 0.91779 0.99896 1.24574 1.15930 1.00457 0.96888 1.16948 0.77269 0.81153 0.87378 1.90865 1.54124 1.76560 1.18328 1.45824 1.66890 1.13260 1.10500 1.22374 0.96985 0.87017 0.90523 0.87942 1.22267 0.91244 0.90781 0.97838 1.44663 1.32337 1.00229 1.56131 1.18624 0.96538 1.06219 1.15625 0.88823 1.24980 0.97018 0.97925 0.97466 1.69841 1.23199 1.36101 1.25817 0.87023 0.76029 0.81910 0.84143 1.21045 1.22937 1.20361 1.21417 0.90316 0.91928 0.94757 1.22469 0.96439 0.94063 1.00129 0.90394 1.21749 0.95371 1.00255 1.02210 1.82913 1.60554 1.11365 0.99125 1.23977 1.07990 0.99492 1.00324 1.20398 1.02551 1.01446 0.89935 0.92375 0.92330 0.92652 0.90736 0.90974 0.82969 0.77197 0.91708 0.95570 0.92678 0.94757 0.94284 0.92946 0.92369 0.92115 0.90479 0.91160 0.90197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.83 37.16 0.37 -0.62 16 2 C -0.06 -0.49 5.54 -27.88 -0.15 -0.64 16 3 C -0.12 -1.20 5.04 -106.45 -0.54 -1.74 16 4 C -0.05 -0.61 9.78 -40.44 -0.40 -1.01 16 5 C -0.26 -3.55 6.45 -36.79 -0.24 -3.79 16 6 C 0.59 10.01 7.78 -12.90 -0.10 9.91 16 7 O -0.52 -10.94 16.59 5.19 0.09 -10.85 16 8 N -0.71 -11.20 5.23 -53.06 -0.28 -11.48 16 9 C 0.14 2.48 2.76 -65.78 -0.18 2.30 16 10 H 0.10 2.00 7.63 -51.93 -0.40 1.60 16 11 C 0.11 2.45 4.39 -2.53 -0.01 2.44 16 12 N -0.61 -15.13 3.21 -170.08 -0.55 -15.68 16 13 C -0.24 -7.10 10.57 -15.06 -0.16 -7.26 16 14 H 0.09 2.85 8.06 -52.49 -0.42 2.43 16 15 C 0.02 0.75 5.43 -17.43 -0.09 0.66 16 16 N -0.91 -28.79 13.97 55.49 0.78 -28.02 16 17 Si 0.88 23.72 24.27 -169.99 -4.13 19.60 16 18 H -0.28 -7.68 6.49 56.52 0.37 -7.32 16 19 H -0.30 -8.14 7.11 56.52 0.40 -7.74 16 20 H -0.28 -7.29 6.66 56.52 0.38 -6.92 16 21 C 0.14 2.77 6.84 -3.07 -0.02 2.75 16 22 C -0.11 -1.73 3.17 -88.79 -0.28 -2.01 16 23 H 0.08 1.09 8.00 -51.93 -0.42 0.67 16 24 C -0.14 -1.71 9.16 37.16 0.34 -1.37 16 25 S 0.19 1.95 22.10 -107.50 -2.38 -0.43 16 26 C -0.20 -1.84 6.28 -35.86 -0.23 -2.07 16 27 C -0.08 -0.53 9.71 36.00 0.35 -0.18 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 30 H 0.05 0.35 7.24 -51.93 -0.38 -0.03 16 31 H 0.07 0.56 8.10 -51.93 -0.42 0.14 16 32 H 0.07 0.47 7.46 -51.93 -0.39 0.08 16 33 H 0.15 1.92 8.06 -52.48 -0.42 1.50 16 34 H 0.39 5.00 7.63 -40.82 -0.31 4.68 16 35 H 0.06 1.72 6.66 -51.93 -0.35 1.37 16 36 H 0.03 0.64 5.55 -51.93 -0.29 0.35 16 37 H 0.26 7.96 8.31 -40.82 -0.34 7.62 16 38 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.04 0.75 7.77 -51.93 -0.40 0.35 16 40 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 42 H 0.06 0.79 8.06 -51.93 -0.42 0.37 16 43 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 45 H 0.08 0.41 6.39 -51.93 -0.33 0.08 16 LS Contribution 370.25 15.07 5.58 5.58 Total: -1.00 -34.86 370.25 -9.32 -44.18 By element: Atomic # 1 Polarization: 6.81 SS G_CDS: -7.10 Total: -0.29 kcal Atomic # 6 Polarization: -1.28 SS G_CDS: -1.34 Total: -2.62 kcal Atomic # 7 Polarization: -55.12 SS G_CDS: -0.05 Total: -55.17 kcal Atomic # 8 Polarization: -10.94 SS G_CDS: 0.09 Total: -10.85 kcal Atomic # 14 Polarization: 23.72 SS G_CDS: -4.13 Total: 19.60 kcal Atomic # 16 Polarization: 1.95 SS G_CDS: -2.38 Total: -0.43 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -34.86 -9.32 -44.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080909094.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.815 kcal (2) G-P(sol) polarization free energy of solvation -34.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.182 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds