Wall clock time and date at job start Tue Mar 31 2020 13:13:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50706 * 109.47036 * 2 1 4 4 C 1.37464 * 122.45119 * 264.97629 * 3 2 1 5 5 C 1.36649 * 113.30007 * 180.02562 * 4 3 2 6 6 C 1.46584 * 125.46272 * 179.97438 * 5 4 3 7 7 O 1.21704 * 119.99485 * 359.97438 * 6 5 4 8 8 N 1.34772 * 119.99989 * 180.02562 * 6 5 4 9 9 C 1.46508 * 119.99860 * 180.02562 * 8 6 5 10 10 H 1.08998 * 110.88306 * 37.42199 * 9 8 6 11 11 C 1.54913 * 111.00104 * 273.54380 * 9 8 6 12 12 N 1.47424 * 104.82792 * 204.87751 * 11 9 8 13 13 C 1.36938 * 125.64355 * 203.86074 * 12 11 9 14 14 H 1.07997 * 119.99870 * 161.52651 * 13 12 11 15 15 C 1.38813 * 120.00393 * 341.52649 * 13 12 11 16 16 N 1.31613 * 120.00026 * 157.52879 * 15 13 12 17 17 Si 1.86799 * 119.99872 * 337.53315 * 15 13 12 18 18 H 1.48500 * 109.47046 * 84.53269 * 17 15 13 19 19 H 1.48499 * 109.47121 * 204.53230 * 17 15 13 20 20 H 1.48503 * 109.46914 * 324.53237 * 17 15 13 21 21 C 1.47016 * 108.70430 * 24.12932 * 12 11 9 22 22 C 1.54319 * 107.27417 * 358.93880 * 21 12 11 23 23 H 1.09005 * 110.87056 * 96.23768 * 22 21 12 24 24 C 1.52998 * 110.72305 * 219.44449 * 22 21 12 25 25 S 1.75839 * 109.08044 * 0.22383 * 5 4 3 26 26 C 1.33820 * 122.44686 * 84.99778 * 3 2 1 27 27 C 1.50698 * 124.52314 * 359.97438 * 26 3 2 28 28 H 1.09001 * 109.47174 * 59.99747 * 1 2 3 29 29 H 1.08995 * 109.46982 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47401 * 300.00508 * 1 2 3 31 31 H 1.08998 * 109.47325 * 240.00271 * 2 1 3 32 32 H 1.08995 * 109.46830 * 119.99616 * 2 1 3 33 33 H 1.08006 * 123.35339 * 0.04214 * 4 3 2 34 34 H 0.96999 * 120.00250 * 359.97438 * 8 6 5 35 35 H 1.08999 * 110.36761 * 86.03775 * 11 9 8 36 36 H 1.08994 * 110.46036 * 323.76648 * 11 9 8 37 37 H 0.97008 * 119.99978 * 180.02562 * 16 15 13 38 38 H 1.09001 * 109.88017 * 118.35603 * 21 12 11 39 39 H 1.09000 * 109.87989 * 239.51674 * 21 12 11 40 40 H 1.09001 * 109.47433 * 173.52274 * 24 22 21 41 41 H 1.09000 * 109.46980 * 293.52172 * 24 22 21 42 42 H 1.09005 * 109.47101 * 53.52117 * 24 22 21 43 43 H 1.08995 * 109.47157 * 90.00255 * 27 26 3 44 44 H 1.09000 * 109.47053 * 210.00473 * 27 26 3 45 45 H 1.09000 * 109.47087 * 329.99831 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3740 2.0824 -1.1555 5 6 2.8062 3.3605 -0.9390 6 6 3.2362 4.3005 -1.9784 7 8 3.2259 3.9615 -3.1472 8 7 3.6438 5.5396 -1.6396 9 6 4.0729 6.4792 -2.6785 10 1 3.4600 6.3751 -3.5738 11 6 5.5749 6.2933 -3.0091 12 7 6.0077 7.5972 -3.5439 13 6 7.0755 7.8037 -4.3760 14 1 7.1449 8.7166 -4.9489 15 6 8.0686 6.8398 -4.4833 16 7 8.8344 6.8002 -5.5529 17 14 8.3179 5.5988 -3.1096 18 1 7.3796 4.4624 -3.2927 19 1 9.7152 5.0973 -3.1431 20 1 8.0570 6.2501 -1.8007 21 6 5.1071 8.6397 -3.0307 22 6 4.0478 7.9392 -2.1539 23 1 4.3291 7.9757 -1.1014 24 6 2.6687 8.5669 -2.3658 25 16 2.7709 3.6946 0.7870 26 6 2.1788 2.1306 1.1250 27 6 1.8678 1.6153 2.5065 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.3071 1.6366 -2.1370 34 1 3.6523 5.8096 -0.7080 35 1 5.7044 5.5135 -3.7596 36 1 6.1359 6.0479 -2.1075 37 1 9.5282 6.1263 -5.6280 38 1 5.6709 9.3543 -2.4310 39 1 4.6212 9.1516 -3.8613 40 1 1.9189 7.9866 -1.8280 41 1 2.6738 9.5903 -1.9908 42 1 2.4308 8.5709 -3.4295 43 1 2.7578 1.1495 2.9295 44 1 1.5548 2.4441 3.1415 45 1 1.0656 0.8796 2.4478 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001080909094.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:13:46 Heat of formation + Delta-G solvation = -15.936276 kcal Electronic energy + Delta-G solvation = -25020.063568 eV Core-core repulsion = 21549.323708 eV Total energy + Delta-G solvation = -3470.739860 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.26948 -39.92920 -39.12841 -35.82919 -34.51400 -33.86137 -32.87219 -32.42173 -30.10579 -28.08803 -27.71756 -25.41594 -24.86725 -24.03068 -22.64035 -21.92593 -21.12592 -19.64235 -19.06747 -18.95649 -17.87869 -17.21204 -17.07974 -16.25031 -16.14500 -15.80333 -15.35214 -15.21133 -15.07953 -14.85152 -14.60755 -14.41407 -14.14141 -14.03073 -13.65692 -13.61767 -13.31722 -13.28247 -13.15455 -12.92320 -12.85979 -12.64492 -12.44299 -12.33564 -12.19239 -11.91398 -11.86901 -11.66485 -11.61270 -11.55241 -11.28783 -10.91784 -10.32433 -9.66162 -9.39191 -9.13524 -8.26234 -5.52024 -0.58317 0.40177 0.83065 1.23790 1.25032 1.26300 1.35008 1.86990 2.05258 2.33563 2.96539 3.28376 3.40967 3.70605 3.75480 3.80523 3.92178 4.04508 4.13250 4.19094 4.36877 4.40965 4.50423 4.51385 4.60109 4.68880 4.69455 4.72852 4.78512 4.87540 4.94059 4.96763 4.96992 5.05622 5.09266 5.14631 5.17070 5.28354 5.28873 5.43541 5.45563 5.51734 5.61337 6.03453 6.30948 6.67168 6.99244 7.45816 8.01891 8.93533 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.016479 B = 0.003484 C = 0.003199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1698.707167 B = 8035.240964 C = 8750.993656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.062 4.062 3 C -0.134 4.134 4 C -0.049 4.049 5 C -0.304 4.304 6 C 0.585 3.415 7 O -0.575 6.575 8 N -0.702 5.702 9 C 0.149 3.851 10 H 0.085 0.915 11 C 0.104 3.896 12 N -0.625 5.625 13 C -0.233 4.233 14 H 0.070 0.930 15 C -0.033 4.033 16 N -0.951 5.951 17 Si 0.938 3.062 18 H -0.293 1.293 19 H -0.300 1.300 20 H -0.261 1.261 21 C 0.133 3.867 22 C -0.092 4.092 23 H 0.106 0.894 24 C -0.132 4.132 25 S 0.239 5.761 26 C -0.183 4.183 27 C -0.088 4.088 28 H 0.042 0.958 29 H 0.072 0.928 30 H 0.062 0.938 31 H 0.069 0.931 32 H 0.090 0.910 33 H 0.138 0.862 34 H 0.412 0.588 35 H 0.020 0.980 36 H 0.026 0.974 37 H 0.263 0.737 38 H 0.046 0.954 39 H 0.042 0.958 40 H 0.071 0.929 41 H 0.083 0.917 42 H 0.050 0.950 43 H 0.090 0.910 44 H 0.085 0.915 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.956 -9.754 22.880 32.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.102 4.102 3 C -0.146 4.146 4 C -0.084 4.084 5 C -0.424 4.424 6 C 0.373 3.627 7 O -0.456 6.456 8 N -0.353 5.353 9 C 0.043 3.957 10 H 0.103 0.897 11 C -0.023 4.023 12 N -0.352 5.352 13 C -0.361 4.361 14 H 0.087 0.913 15 C -0.228 4.228 16 N -0.598 5.598 17 Si 0.767 3.233 18 H -0.221 1.221 19 H -0.228 1.228 20 H -0.185 1.185 21 C 0.008 3.992 22 C -0.112 4.112 23 H 0.124 0.876 24 C -0.189 4.189 25 S 0.508 5.492 26 C -0.303 4.303 27 C -0.147 4.147 28 H 0.062 0.938 29 H 0.091 0.909 30 H 0.082 0.918 31 H 0.088 0.912 32 H 0.109 0.891 33 H 0.156 0.844 34 H 0.249 0.751 35 H 0.039 0.961 36 H 0.044 0.956 37 H 0.072 0.928 38 H 0.064 0.936 39 H 0.060 0.940 40 H 0.090 0.910 41 H 0.102 0.898 42 H 0.069 0.931 43 H 0.109 0.891 44 H 0.104 0.896 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -20.392 -8.687 22.844 31.830 hybrid contribution 0.694 -1.770 -0.997 2.147 sum -19.698 -10.457 21.847 31.219 Atomic orbital electron populations 1.21738 0.93989 1.02525 1.01949 1.20305 0.96586 0.89633 1.03656 1.18793 1.05443 0.99747 0.90584 1.20773 0.95332 0.91797 1.00471 1.24320 1.18959 1.00428 0.98669 1.17453 0.76226 0.81571 0.87470 1.90829 1.56434 1.77565 1.20818 1.45612 1.66236 1.12617 1.10859 1.22020 0.92977 0.89488 0.91259 0.89674 1.22233 0.94978 0.88890 0.96176 1.44770 1.31838 1.02551 1.56066 1.18641 0.97377 1.04830 1.15295 0.91251 1.25573 0.97602 1.00343 0.99298 1.69950 1.24572 1.37732 1.27543 0.86071 0.75414 0.79563 0.82208 1.22077 1.22839 1.18542 1.21701 0.90509 0.91245 0.95704 1.22450 0.97136 0.91056 1.00530 0.87557 1.21725 0.93338 1.01728 1.02121 1.82632 1.59637 1.11573 0.95327 1.24516 1.05324 0.98803 1.01657 1.20600 1.03732 1.02470 0.87868 0.93830 0.90905 0.91848 0.91246 0.89143 0.84434 0.75085 0.96127 0.95629 0.92818 0.93598 0.93995 0.91017 0.89843 0.93135 0.89112 0.89613 0.88651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.60 9.83 71.98 0.71 -0.90 16 2 C -0.06 -0.82 5.54 29.85 0.17 -0.66 16 3 C -0.13 -2.47 5.04 -21.05 -0.11 -2.57 16 4 C -0.05 -1.24 9.78 21.71 0.21 -1.03 16 5 C -0.30 -8.19 6.45 24.08 0.16 -8.03 16 6 C 0.58 20.18 7.78 86.42 0.67 20.85 16 7 O -0.58 -25.41 16.59 -4.36 -0.07 -25.48 16 8 N -0.70 -21.24 5.23 -439.99 -2.30 -23.54 16 9 C 0.15 5.34 2.76 46.38 0.13 5.47 16 10 H 0.09 3.39 7.63 -2.39 -0.02 3.37 16 11 C 0.10 4.90 4.39 86.86 0.38 5.28 16 12 N -0.63 -31.48 3.21 -692.02 -2.22 -33.70 16 13 C -0.23 -14.00 10.57 84.03 0.89 -13.11 16 14 H 0.07 4.41 8.06 -2.91 -0.02 4.39 16 15 C -0.03 -2.08 5.43 84.86 0.46 -1.62 16 16 N -0.95 -62.85 13.97 21.65 0.30 -62.55 16 17 Si 0.94 50.60 24.27 68.60 1.66 52.26 16 18 H -0.29 -16.14 6.49 99.48 0.65 -15.50 16 19 H -0.30 -15.99 7.11 99.48 0.71 -15.28 16 20 H -0.26 -13.14 6.66 99.48 0.66 -12.48 16 21 C 0.13 5.01 6.84 86.73 0.59 5.60 16 22 C -0.09 -2.61 3.17 -9.61 -0.03 -2.65 16 23 H 0.11 2.47 8.00 -2.38 -0.02 2.45 16 24 C -0.13 -2.79 9.16 71.98 0.66 -2.13 16 25 S 0.24 4.16 22.10 -56.49 -1.25 2.91 16 26 C -0.18 -2.80 6.28 24.68 0.15 -2.64 16 27 C -0.09 -0.69 9.71 71.24 0.69 0.00 16 28 H 0.04 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.06 0.60 7.24 -2.39 -0.02 0.58 16 31 H 0.07 0.98 8.10 -2.39 -0.02 0.96 16 32 H 0.09 0.87 7.46 -2.39 -0.02 0.85 16 33 H 0.14 3.72 8.06 -2.91 -0.02 3.70 16 34 H 0.41 9.34 7.63 -92.71 -0.71 8.63 16 35 H 0.02 1.14 6.66 -2.39 -0.02 1.12 16 36 H 0.03 1.23 5.55 -2.39 -0.01 1.22 16 37 H 0.26 16.52 8.31 -92.70 -0.77 15.75 16 38 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 39 H 0.04 1.56 7.77 -2.39 -0.02 1.54 16 40 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 41 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 42 H 0.05 1.19 8.06 -2.38 -0.02 1.17 16 43 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 44 H 0.09 0.47 8.14 -2.39 -0.02 0.45 16 45 H 0.09 0.52 6.39 -2.39 -0.02 0.51 16 Total: -1.00 -80.84 370.25 2.04 -78.79 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: 0.18 Total: 9.44 kcal Atomic # 6 Polarization: -3.87 SS G_CDS: 5.73 Total: 1.86 kcal Atomic # 7 Polarization: -115.58 SS G_CDS: -4.22 Total: -119.79 kcal Atomic # 8 Polarization: -25.41 SS G_CDS: -0.07 Total: -25.48 kcal Atomic # 14 Polarization: 50.60 SS G_CDS: 1.66 Total: 52.26 kcal Atomic # 16 Polarization: 4.16 SS G_CDS: -1.25 Total: 2.91 kcal Total: -80.84 2.04 -78.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080909094.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.858 kcal (2) G-P(sol) polarization free energy of solvation -80.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds