Wall clock time and date at job start Tue Mar 31 2020 13:08:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50699 * 109.47217 * 2 1 4 4 C 1.33813 * 124.52090 * 90.00188 * 3 2 1 5 5 C 1.37477 * 115.09629 * 179.74285 * 4 3 2 6 6 C 1.36643 * 113.30040 * 0.49847 * 5 4 3 7 7 C 1.46583 * 125.46089 * 179.79508 * 6 5 4 8 8 O 1.21699 * 119.99629 * 359.72134 * 7 6 5 9 9 N 1.34774 * 119.99836 * 179.72126 * 7 6 5 10 10 C 1.46503 * 119.99671 * 180.02562 * 9 7 6 11 11 H 1.08995 * 109.47545 * 34.99262 * 10 9 7 12 12 C 1.53003 * 109.46660 * 274.99524 * 10 9 7 13 13 C 1.52997 * 109.47241 * 180.02562 * 12 10 9 14 14 C 1.52999 * 109.47114 * 59.99975 * 13 12 10 15 15 C 1.53003 * 109.47087 * 300.00120 * 14 13 12 16 16 C 1.52997 * 109.47241 * 59.99958 * 15 14 13 17 17 H 1.09004 * 109.46812 * 60.00212 * 16 15 14 18 18 N 1.46498 * 109.47036 * 180.02562 * 16 15 14 19 19 C 1.36943 * 119.99752 * 274.72222 * 18 16 15 20 20 H 1.08002 * 119.99793 * 0.27665 * 19 18 16 21 21 C 1.38811 * 120.00012 * 180.27737 * 19 18 16 22 22 N 1.31611 * 120.00081 * 180.02562 * 21 19 18 23 23 Si 1.86800 * 119.99814 * 0.02562 * 21 19 18 24 24 H 1.48501 * 109.47483 * 90.00178 * 23 21 19 25 25 H 1.48498 * 109.47011 * 210.00042 * 23 21 19 26 26 H 1.48502 * 109.47495 * 329.99664 * 23 21 19 27 27 S 1.70615 * 124.52140 * 270.02611 * 3 2 1 28 28 H 1.09008 * 109.46896 * 300.00058 * 1 2 3 29 29 H 1.08998 * 109.47270 * 59.99420 * 1 2 3 30 30 H 1.09001 * 109.47517 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46721 * 240.00147 * 2 1 3 32 32 H 1.08996 * 109.46965 * 120.00135 * 2 1 3 33 33 H 1.07997 * 122.45469 * 359.97438 * 4 3 2 34 34 H 1.08000 * 123.34601 * 180.29385 * 5 4 3 35 35 H 0.96998 * 120.00390 * 359.97438 * 9 7 6 36 36 H 1.08997 * 109.47066 * 59.99946 * 12 10 9 37 37 H 1.09004 * 109.47044 * 299.99840 * 12 10 9 38 38 H 1.08995 * 109.47096 * 299.99819 * 13 12 10 39 39 H 1.09003 * 109.47189 * 180.02562 * 13 12 10 40 40 H 1.09000 * 109.47204 * 180.02562 * 14 13 12 41 41 H 1.08995 * 109.47266 * 59.99948 * 14 13 12 42 42 H 1.09009 * 109.46941 * 299.99855 * 15 14 13 43 43 H 1.08997 * 109.47066 * 180.02562 * 15 14 13 44 44 H 0.97001 * 120.00384 * 95.00578 * 18 16 15 45 45 H 0.97008 * 120.00329 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2852 2.1357 1.1025 5 6 2.7425 3.4125 0.8774 6 6 2.8458 3.7236 -0.4491 7 6 3.2996 5.0089 -0.9883 8 8 3.6178 5.9077 -0.2321 9 7 3.3645 5.1952 -2.3216 10 6 3.8186 6.4796 -2.8605 11 1 4.5906 6.8933 -2.2118 12 6 2.6374 7.4496 -2.9301 13 6 3.1114 8.7908 -3.4935 14 6 3.6825 8.5810 -4.8973 15 6 4.8637 7.6110 -4.8276 16 6 4.3898 6.2698 -4.2643 17 1 3.6175 5.8560 -4.9127 18 7 5.5209 5.3413 -4.1970 19 6 5.8661 4.6020 -5.2968 20 1 5.3073 4.7068 -6.2150 21 6 6.9343 3.7179 -5.2314 22 7 7.2664 3.0078 -6.2885 23 14 7.9003 3.5362 -3.6430 24 1 7.2883 2.4695 -2.8106 25 1 9.3057 3.1737 -3.9571 26 1 7.8751 4.8208 -2.8984 27 16 2.3541 2.3326 -1.4057 28 1 -0.3633 0.5139 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 2.1440 1.7376 2.0964 34 1 2.9920 4.1022 1.6702 35 1 3.1112 4.4786 -2.9243 36 1 2.2302 7.5986 -1.9301 37 1 1.8653 7.0359 -3.5789 38 1 3.8836 9.2046 -2.8451 39 1 2.2700 9.4820 -3.5427 40 1 4.0206 9.5364 -5.2985 41 1 2.9103 8.1671 -5.5456 42 1 5.6361 8.0250 -4.1792 43 1 5.2709 7.4620 -5.8276 44 1 6.0227 5.2471 -3.3723 45 1 8.0131 2.3902 -6.2430 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085263496.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:08:28 Heat of formation + Delta-G solvation = -16.853204 kcal Electronic energy + Delta-G solvation = -25259.302928 eV Core-core repulsion = 21788.523306 eV Total energy + Delta-G solvation = -3470.779621 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.90173 -38.40550 -37.52495 -34.18888 -33.89884 -33.85947 -31.37509 -29.92185 -28.79629 -27.88318 -25.30973 -23.49884 -22.76936 -22.34394 -21.01778 -20.78541 -19.97363 -19.02426 -17.91674 -17.51834 -16.30553 -15.75386 -15.34164 -14.97264 -14.74815 -14.43097 -14.30386 -13.97841 -13.76050 -13.53685 -13.38069 -13.15932 -12.99735 -12.63886 -12.45992 -12.34905 -12.24205 -11.98423 -11.72906 -11.38538 -11.33657 -11.02398 -10.95393 -10.87219 -10.83876 -10.62129 -10.38020 -10.13322 -9.90891 -9.71403 -9.62014 -8.97420 -8.86948 -8.63374 -8.57837 -7.31728 -5.81075 -3.16862 0.50146 1.43659 1.86906 2.36971 3.31583 3.36598 3.39908 3.42029 3.45072 4.46263 4.56643 4.77616 4.88351 4.92494 4.99569 5.05820 5.16896 5.24158 5.32508 5.40400 5.45913 5.46253 5.57133 5.57812 5.65972 5.67048 5.75031 5.85166 5.89305 5.89971 5.94267 6.03303 6.11215 6.22664 6.31190 6.35980 6.38271 6.40772 6.44910 6.72856 6.79997 6.96478 7.71359 7.94072 8.36207 8.37860 9.15828 9.88941 10.08373 11.36879 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.009973 B = 0.004793 C = 0.003687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2806.795542 B = 5839.940180 C = 7591.698412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.056 4.056 3 C -0.198 4.198 4 C -0.155 4.155 5 C -0.058 4.058 6 C -0.265 4.265 7 C 0.589 3.411 8 O -0.539 6.539 9 N -0.707 5.707 10 C 0.138 3.862 11 H 0.086 0.914 12 C -0.124 4.124 13 C -0.114 4.114 14 C -0.120 4.120 15 C -0.133 4.133 16 C 0.178 3.822 17 H 0.060 0.940 18 N -0.747 5.747 19 C -0.244 4.244 20 H 0.091 0.909 21 C 0.010 3.990 22 N -0.931 5.931 23 Si 0.877 3.123 24 H -0.284 1.284 25 H -0.291 1.291 26 H -0.277 1.277 27 S 0.218 5.782 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.062 0.938 31 H 0.077 0.923 32 H 0.082 0.918 33 H 0.141 0.859 34 H 0.150 0.850 35 H 0.402 0.598 36 H 0.064 0.936 37 H 0.064 0.936 38 H 0.062 0.938 39 H 0.059 0.941 40 H 0.057 0.943 41 H 0.060 0.940 42 H 0.056 0.944 43 H 0.071 0.929 44 H 0.362 0.638 45 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.876 0.015 11.512 18.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.095 4.095 3 C -0.318 4.318 4 C -0.186 4.186 5 C -0.092 4.092 6 C -0.385 4.385 7 C 0.375 3.625 8 O -0.419 6.419 9 N -0.356 5.356 10 C 0.033 3.967 11 H 0.104 0.896 12 C -0.163 4.163 13 C -0.152 4.152 14 C -0.158 4.158 15 C -0.173 4.173 16 C 0.068 3.932 17 H 0.078 0.922 18 N -0.389 5.389 19 C -0.374 4.374 20 H 0.109 0.891 21 C -0.186 4.186 22 N -0.579 5.579 23 Si 0.707 3.293 24 H -0.210 1.210 25 H -0.217 1.217 26 H -0.203 1.203 27 S 0.487 5.513 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.081 0.919 31 H 0.096 0.904 32 H 0.101 0.899 33 H 0.159 0.841 34 H 0.168 0.832 35 H 0.237 0.763 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.080 0.920 39 H 0.078 0.922 40 H 0.075 0.925 41 H 0.079 0.921 42 H 0.075 0.925 43 H 0.090 0.910 44 H 0.195 0.805 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -14.714 0.233 10.216 17.914 hybrid contribution 0.946 -0.357 2.410 2.614 sum -13.767 -0.124 12.626 18.681 Atomic orbital electron populations 1.21798 0.94117 1.02082 1.02556 1.20150 0.96299 0.89483 1.03608 1.24300 1.07253 1.02154 0.98119 1.19896 1.05115 0.94215 0.99396 1.20688 0.97102 0.96230 0.95136 1.24683 1.16171 0.99562 0.98132 1.16949 0.77543 0.85459 0.82545 1.90789 1.49950 1.42967 1.58178 1.45869 1.66934 1.16910 1.05871 1.21413 0.96239 0.82488 0.96580 0.89608 1.21871 0.97802 0.95387 1.01238 1.21479 1.00367 0.96357 0.96993 1.21580 0.98526 0.99358 0.96318 1.22180 0.97047 0.95732 1.02384 1.20450 0.90495 0.90338 0.91962 0.92180 1.42803 1.34978 1.48224 1.12925 1.19036 1.11930 1.15004 0.91409 0.89073 1.24608 0.98531 0.98844 0.96579 1.69689 1.30731 1.29293 1.28175 0.86669 0.80168 0.77952 0.84496 1.21020 1.21705 1.20343 1.83295 1.58832 1.02251 1.06956 0.92279 0.92305 0.91929 0.90449 0.89906 0.84139 0.83198 0.76314 0.91757 0.91760 0.91969 0.92194 0.92458 0.92140 0.92508 0.91020 0.80526 0.93047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.89 37.16 0.37 -0.70 16 2 C -0.06 -0.48 6.36 -27.88 -0.18 -0.65 16 3 C -0.20 -2.21 5.53 -35.86 -0.20 -2.40 16 4 C -0.16 -1.74 10.00 -41.41 -0.41 -2.16 16 5 C -0.06 -0.78 10.01 -40.43 -0.40 -1.18 16 6 C -0.26 -3.98 6.45 -36.79 -0.24 -4.22 16 7 C 0.59 10.20 7.75 -12.90 -0.10 10.10 16 8 O -0.54 -10.66 16.50 5.19 0.09 -10.58 16 9 N -0.71 -11.69 4.90 -55.14 -0.27 -11.96 16 10 C 0.14 2.28 1.98 -67.93 -0.13 2.14 16 11 H 0.09 1.58 7.58 -51.93 -0.39 1.19 16 12 C -0.12 -1.71 5.49 -26.73 -0.15 -1.86 16 13 C -0.11 -1.42 5.92 -26.73 -0.16 -1.58 16 14 C -0.12 -1.58 5.92 -26.73 -0.16 -1.73 16 15 C -0.13 -2.21 5.50 -26.73 -0.15 -2.36 16 16 C 0.18 3.24 2.29 -67.93 -0.16 3.09 16 17 H 0.06 1.11 8.08 -51.93 -0.42 0.69 16 18 N -0.75 -17.01 4.76 -53.43 -0.25 -17.26 16 19 C -0.24 -6.57 10.41 -15.06 -0.16 -6.73 16 20 H 0.09 2.61 8.06 -52.49 -0.42 2.19 16 21 C 0.01 0.30 5.50 -17.43 -0.10 0.20 16 22 N -0.93 -28.58 13.97 55.49 0.78 -27.81 16 23 Si 0.88 22.29 27.74 -169.99 -4.71 17.57 16 24 H -0.28 -7.19 7.11 56.52 0.40 -6.79 16 25 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 26 H -0.28 -6.85 6.52 56.52 0.37 -6.48 16 27 S 0.22 2.80 22.10 -107.50 -2.38 0.42 16 28 H 0.06 0.42 8.14 -51.92 -0.42 0.00 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.14 1.23 8.06 -52.49 -0.42 0.81 16 34 H 0.15 1.90 8.06 -52.49 -0.42 1.48 16 35 H 0.40 6.40 7.71 -40.82 -0.31 6.08 16 36 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 38 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 39 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 41 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 42 H 0.06 0.97 8.14 -51.92 -0.42 0.55 16 43 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 44 H 0.36 8.55 5.66 -40.82 -0.23 8.32 16 45 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 LS Contribution 377.08 15.07 5.68 5.68 Total: -1.00 -31.67 377.08 -10.68 -42.35 By element: Atomic # 1 Polarization: 18.91 SS G_CDS: -7.29 Total: 11.62 kcal Atomic # 6 Polarization: -7.73 SS G_CDS: -2.32 Total: -10.05 kcal Atomic # 7 Polarization: -57.28 SS G_CDS: 0.25 Total: -57.03 kcal Atomic # 8 Polarization: -10.66 SS G_CDS: 0.09 Total: -10.58 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -4.71 Total: 17.57 kcal Atomic # 16 Polarization: 2.80 SS G_CDS: -2.38 Total: 0.42 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -31.67 -10.68 -42.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085263496.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.501 kcal (2) G-P(sol) polarization free energy of solvation -31.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds