Wall clock time and date at job start Tue Mar 31 2020 13:08:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50699 * 109.47217 * 2 1 4 4 C 1.33813 * 124.52090 * 90.00188 * 3 2 1 5 5 C 1.37477 * 115.09629 * 179.74285 * 4 3 2 6 6 C 1.36643 * 113.30040 * 0.49847 * 5 4 3 7 7 C 1.46583 * 125.46089 * 179.79508 * 6 5 4 8 8 O 1.21699 * 119.99629 * 359.72134 * 7 6 5 9 9 N 1.34774 * 119.99836 * 179.72126 * 7 6 5 10 10 C 1.46503 * 119.99671 * 180.02562 * 9 7 6 11 11 H 1.08995 * 109.47545 * 34.99262 * 10 9 7 12 12 C 1.53003 * 109.46660 * 274.99524 * 10 9 7 13 13 C 1.52997 * 109.47241 * 180.02562 * 12 10 9 14 14 C 1.52999 * 109.47114 * 59.99975 * 13 12 10 15 15 C 1.53003 * 109.47087 * 300.00120 * 14 13 12 16 16 C 1.52997 * 109.47241 * 59.99958 * 15 14 13 17 17 H 1.09004 * 109.46812 * 60.00212 * 16 15 14 18 18 N 1.46498 * 109.47036 * 180.02562 * 16 15 14 19 19 C 1.36943 * 119.99752 * 274.72222 * 18 16 15 20 20 H 1.08002 * 119.99793 * 0.27665 * 19 18 16 21 21 C 1.38811 * 120.00012 * 180.27737 * 19 18 16 22 22 N 1.31611 * 120.00081 * 180.02562 * 21 19 18 23 23 Si 1.86800 * 119.99814 * 0.02562 * 21 19 18 24 24 H 1.48501 * 109.47483 * 90.00178 * 23 21 19 25 25 H 1.48498 * 109.47011 * 210.00042 * 23 21 19 26 26 H 1.48502 * 109.47495 * 329.99664 * 23 21 19 27 27 S 1.70615 * 124.52140 * 270.02611 * 3 2 1 28 28 H 1.09008 * 109.46896 * 300.00058 * 1 2 3 29 29 H 1.08998 * 109.47270 * 59.99420 * 1 2 3 30 30 H 1.09001 * 109.47517 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46721 * 240.00147 * 2 1 3 32 32 H 1.08996 * 109.46965 * 120.00135 * 2 1 3 33 33 H 1.07997 * 122.45469 * 359.97438 * 4 3 2 34 34 H 1.08000 * 123.34601 * 180.29385 * 5 4 3 35 35 H 0.96998 * 120.00390 * 359.97438 * 9 7 6 36 36 H 1.08997 * 109.47066 * 59.99946 * 12 10 9 37 37 H 1.09004 * 109.47044 * 299.99840 * 12 10 9 38 38 H 1.08995 * 109.47096 * 299.99819 * 13 12 10 39 39 H 1.09003 * 109.47189 * 180.02562 * 13 12 10 40 40 H 1.09000 * 109.47204 * 180.02562 * 14 13 12 41 41 H 1.08995 * 109.47266 * 59.99948 * 14 13 12 42 42 H 1.09009 * 109.46941 * 299.99855 * 15 14 13 43 43 H 1.08997 * 109.47066 * 180.02562 * 15 14 13 44 44 H 0.97001 * 120.00384 * 95.00578 * 18 16 15 45 45 H 0.97008 * 120.00329 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2852 2.1357 1.1025 5 6 2.7425 3.4125 0.8774 6 6 2.8458 3.7236 -0.4491 7 6 3.2996 5.0089 -0.9883 8 8 3.6178 5.9077 -0.2321 9 7 3.3645 5.1952 -2.3216 10 6 3.8186 6.4796 -2.8605 11 1 4.5906 6.8933 -2.2118 12 6 2.6374 7.4496 -2.9301 13 6 3.1114 8.7908 -3.4935 14 6 3.6825 8.5810 -4.8973 15 6 4.8637 7.6110 -4.8276 16 6 4.3898 6.2698 -4.2643 17 1 3.6175 5.8560 -4.9127 18 7 5.5209 5.3413 -4.1970 19 6 5.8661 4.6020 -5.2968 20 1 5.3073 4.7068 -6.2150 21 6 6.9343 3.7179 -5.2314 22 7 7.2664 3.0078 -6.2885 23 14 7.9003 3.5362 -3.6430 24 1 7.2883 2.4695 -2.8106 25 1 9.3057 3.1737 -3.9571 26 1 7.8751 4.8208 -2.8984 27 16 2.3541 2.3326 -1.4057 28 1 -0.3633 0.5139 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 2.1440 1.7376 2.0964 34 1 2.9920 4.1022 1.6702 35 1 3.1112 4.4786 -2.9243 36 1 2.2302 7.5986 -1.9301 37 1 1.8653 7.0359 -3.5789 38 1 3.8836 9.2046 -2.8451 39 1 2.2700 9.4820 -3.5427 40 1 4.0206 9.5364 -5.2985 41 1 2.9103 8.1671 -5.5456 42 1 5.6361 8.0250 -4.1792 43 1 5.2709 7.4620 -5.8276 44 1 6.0227 5.2471 -3.3723 45 1 8.0131 2.3902 -6.2430 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085263496.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:08:28 Heat of formation + Delta-G solvation = -35.763366 kcal Electronic energy + Delta-G solvation = -25260.122934 eV Core-core repulsion = 21788.523306 eV Total energy + Delta-G solvation = -3471.599628 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.22734 -39.57886 -38.66677 -35.95994 -35.23258 -34.66750 -33.35506 -31.10032 -30.15425 -29.11364 -26.26745 -25.33731 -23.84912 -23.22437 -22.53682 -22.04421 -21.19644 -20.32880 -19.53248 -18.85829 -17.55626 -16.89942 -16.83821 -16.37238 -16.13935 -15.76777 -15.22100 -15.11790 -14.92809 -14.86740 -14.72426 -14.52662 -14.33004 -13.94662 -13.73528 -13.64857 -13.29531 -13.10675 -12.98647 -12.83436 -12.43923 -12.42650 -12.21122 -12.11478 -12.08011 -11.85463 -11.75349 -11.69061 -11.50373 -11.29012 -11.10431 -10.91441 -10.17780 -9.66870 -9.58569 -9.33269 -8.03512 -5.35233 -0.53401 0.43032 0.89348 1.32269 1.34625 1.36169 1.39603 2.05810 2.15835 2.43887 3.28422 3.42012 3.65339 3.69564 3.82720 4.07904 4.12144 4.15299 4.21915 4.32208 4.38278 4.39004 4.42277 4.46188 4.54632 4.64252 4.78047 4.89858 4.92040 4.95815 5.02415 5.06536 5.11749 5.18528 5.21443 5.25982 5.27569 5.33198 5.41310 5.42117 5.48842 5.60356 5.77560 6.20514 6.39497 7.04008 7.05636 7.81192 7.99389 9.17753 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.009973 B = 0.004793 C = 0.003687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2806.795542 B = 5839.940180 C = 7591.698412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.059 4.059 3 C -0.182 4.182 4 C -0.160 4.160 5 C -0.051 4.051 6 C -0.303 4.303 7 C 0.587 3.413 8 O -0.573 6.573 9 N -0.707 5.707 10 C 0.144 3.856 11 H 0.066 0.934 12 C -0.116 4.116 13 C -0.109 4.109 14 C -0.111 4.111 15 C -0.128 4.128 16 C 0.175 3.825 17 H 0.060 0.940 18 N -0.750 5.750 19 C -0.217 4.217 20 H 0.068 0.932 21 C -0.049 4.049 22 N -0.977 5.977 23 Si 0.934 3.066 24 H -0.281 1.281 25 H -0.295 1.295 26 H -0.268 1.268 27 S 0.206 5.794 28 H 0.061 0.939 29 H 0.050 0.950 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.102 0.898 33 H 0.171 0.829 34 H 0.152 0.848 35 H 0.404 0.596 36 H 0.060 0.940 37 H 0.077 0.923 38 H 0.058 0.942 39 H 0.088 0.912 40 H 0.076 0.924 41 H 0.069 0.931 42 H 0.050 0.950 43 H 0.050 0.950 44 H 0.359 0.641 45 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.550 0.021 13.193 21.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.098 4.098 3 C -0.302 4.302 4 C -0.189 4.189 5 C -0.085 4.085 6 C -0.423 4.423 7 C 0.375 3.625 8 O -0.455 6.455 9 N -0.356 5.356 10 C 0.039 3.961 11 H 0.084 0.916 12 C -0.155 4.155 13 C -0.147 4.147 14 C -0.149 4.149 15 C -0.169 4.169 16 C 0.067 3.933 17 H 0.078 0.922 18 N -0.392 5.392 19 C -0.348 4.348 20 H 0.086 0.914 21 C -0.241 4.241 22 N -0.628 5.628 23 Si 0.764 3.236 24 H -0.208 1.208 25 H -0.222 1.222 26 H -0.194 1.194 27 S 0.475 5.525 28 H 0.080 0.920 29 H 0.069 0.931 30 H 0.098 0.902 31 H 0.097 0.903 32 H 0.120 0.880 33 H 0.188 0.812 34 H 0.170 0.830 35 H 0.239 0.761 36 H 0.079 0.921 37 H 0.095 0.905 38 H 0.077 0.923 39 H 0.106 0.894 40 H 0.094 0.906 41 H 0.088 0.912 42 H 0.069 0.931 43 H 0.069 0.931 44 H 0.191 0.809 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -16.428 0.278 11.904 20.289 hybrid contribution 1.366 -0.387 1.886 2.361 sum -15.062 -0.109 13.790 20.421 Atomic orbital electron populations 1.21792 0.93014 1.03180 1.02344 1.20324 0.97142 0.87656 1.04662 1.24725 1.05399 1.03073 0.97030 1.20138 1.04713 0.93243 1.00831 1.20949 0.95859 0.97155 0.94569 1.24554 1.19056 0.99538 0.99165 1.17261 0.76888 0.86026 0.82337 1.90753 1.51689 1.44301 1.58767 1.45896 1.66725 1.16985 1.05959 1.21325 0.97004 0.83234 0.94547 0.91596 1.21822 0.96692 0.95450 1.01523 1.21476 1.01268 0.95895 0.96065 1.21523 0.97024 0.99110 0.97228 1.22061 0.98558 0.95607 1.00657 1.20669 0.89021 0.90217 0.93414 0.92157 1.42841 1.36145 1.48737 1.11504 1.19001 1.10428 1.13899 0.91506 0.91388 1.25197 1.00154 0.99557 0.99219 1.69827 1.31799 1.30880 1.30270 0.85727 0.78479 0.78154 0.81272 1.20755 1.22214 1.19382 1.83304 1.59156 1.01994 1.08041 0.91961 0.93085 0.90226 0.90280 0.87952 0.81154 0.82997 0.76084 0.92115 0.90456 0.92299 0.89361 0.90559 0.91215 0.93113 0.93134 0.80905 0.93431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 9.89 71.98 0.71 -1.00 16 2 C -0.06 -0.83 6.36 29.85 0.19 -0.64 16 3 C -0.18 -3.66 5.53 24.68 0.14 -3.53 16 4 C -0.16 -3.20 10.00 21.08 0.21 -2.99 16 5 C -0.05 -1.31 10.01 21.72 0.22 -1.09 16 6 C -0.30 -9.03 6.45 24.08 0.16 -8.87 16 7 C 0.59 20.49 7.75 86.42 0.67 21.16 16 8 O -0.57 -22.95 16.50 -4.34 -0.07 -23.02 16 9 N -0.71 -23.46 4.90 -446.59 -2.19 -25.65 16 10 C 0.14 4.72 1.98 44.99 0.09 4.80 16 11 H 0.07 2.45 7.58 -2.39 -0.02 2.43 16 12 C -0.12 -3.02 5.49 30.59 0.17 -2.85 16 13 C -0.11 -2.43 5.92 30.59 0.18 -2.25 16 14 C -0.11 -2.66 5.92 30.59 0.18 -2.48 16 15 C -0.13 -4.21 5.50 30.59 0.17 -4.04 16 16 C 0.17 6.36 2.29 44.99 0.10 6.46 16 17 H 0.06 2.21 8.08 -2.39 -0.02 2.19 16 18 N -0.75 -34.38 4.76 -322.94 -1.54 -35.92 16 19 C -0.22 -11.91 10.41 84.03 0.87 -11.04 16 20 H 0.07 4.01 8.06 -2.91 -0.02 3.99 16 21 C -0.05 -2.86 5.50 84.86 0.47 -2.39 16 22 N -0.98 -61.39 13.97 21.65 0.30 -61.09 16 23 Si 0.93 46.72 27.74 68.60 1.90 48.62 16 24 H -0.28 -13.83 7.11 99.48 0.71 -13.12 16 25 H -0.30 -14.92 7.11 99.48 0.71 -14.21 16 26 H -0.27 -12.83 6.52 99.48 0.65 -12.18 16 27 S 0.21 5.16 22.10 -56.49 -1.25 3.91 16 28 H 0.06 0.70 8.14 -2.38 -0.02 0.69 16 29 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.17 2.37 8.06 -2.91 -0.02 2.34 16 34 H 0.15 3.74 8.06 -2.91 -0.02 3.72 16 35 H 0.40 12.96 7.71 -92.71 -0.72 12.25 16 36 H 0.06 1.66 8.14 -2.39 -0.02 1.65 16 37 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 38 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 39 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 40 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 41 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 42 H 0.05 1.71 8.14 -2.38 -0.02 1.69 16 43 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 44 H 0.36 16.94 5.66 -92.71 -0.52 16.41 16 45 H 0.26 15.52 8.31 -92.70 -0.77 14.74 16 Total: -1.00 -69.49 377.08 1.37 -68.11 By element: Atomic # 1 Polarization: 36.08 SS G_CDS: -0.31 Total: 35.77 kcal Atomic # 6 Polarization: -15.25 SS G_CDS: 4.52 Total: -10.73 kcal Atomic # 7 Polarization: -119.23 SS G_CDS: -3.42 Total: -122.66 kcal Atomic # 8 Polarization: -22.95 SS G_CDS: -0.07 Total: -23.02 kcal Atomic # 14 Polarization: 46.72 SS G_CDS: 1.90 Total: 48.62 kcal Atomic # 16 Polarization: 5.16 SS G_CDS: -1.25 Total: 3.91 kcal Total: -69.49 1.37 -68.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085263496.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.347 kcal (2) G-P(sol) polarization free energy of solvation -69.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds