Wall clock time and date at job start Tue Mar 31 2020 13:07:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50702 * 109.46805 * 2 1 4 4 S 1.70615 * 124.52166 * 269.97386 * 3 2 1 5 5 C 1.75838 * 91.56163 * 180.02562 * 4 3 2 6 6 C 1.46573 * 125.45852 * 179.97438 * 5 4 3 7 7 O 1.21705 * 120.00264 * 187.11510 * 6 5 4 8 8 N 1.34775 * 120.00130 * 7.12575 * 6 5 4 9 9 C 1.46505 * 120.00207 * 6.42188 * 8 6 5 10 10 C 1.46506 * 120.00229 * 186.42757 * 8 6 5 11 11 C 1.52991 * 109.47142 * 262.64046 * 10 8 6 12 12 H 1.09000 * 113.04247 * 310.30197 * 11 10 8 13 13 C 1.53948 * 113.76972 * 178.55684 * 11 10 8 14 14 C 1.53946 * 86.28934 * 222.09288 * 13 11 10 15 15 N 1.47579 * 86.24290 * 23.54683 * 14 13 11 16 16 C 1.36934 * 134.49112 * 155.42432 * 15 14 13 17 17 H 1.08005 * 119.99984 * 135.93461 * 16 15 14 18 18 C 1.38805 * 120.00156 * 315.93296 * 16 15 14 19 19 N 1.31620 * 119.99885 * 157.15789 * 18 16 15 20 20 Si 1.86802 * 120.00291 * 337.15695 * 18 16 15 21 21 H 1.48504 * 109.46592 * 63.53973 * 20 18 16 22 22 H 1.48495 * 109.47147 * 183.54113 * 20 18 16 23 23 H 1.48496 * 109.47105 * 303.54388 * 20 18 16 24 24 C 1.36652 * 109.07854 * 0.26816 * 5 4 3 25 25 C 1.33815 * 124.52059 * 90.00623 * 3 2 1 26 26 C 1.50702 * 122.44865 * 359.97438 * 25 3 2 27 27 H 1.09000 * 109.47540 * 299.99900 * 1 2 3 28 28 H 1.08999 * 109.47633 * 60.00151 * 1 2 3 29 29 H 1.09006 * 109.47409 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46693 * 240.00347 * 2 1 3 31 31 H 1.08996 * 109.46990 * 120.00206 * 2 1 3 32 32 H 1.08999 * 109.46852 * 276.17854 * 9 8 6 33 33 H 1.09000 * 109.46395 * 36.17377 * 9 8 6 34 34 H 1.08998 * 109.47214 * 156.16717 * 9 8 6 35 35 H 1.09003 * 109.46785 * 142.63783 * 10 8 6 36 36 H 1.09001 * 109.46703 * 22.64150 * 10 8 6 37 37 H 1.08995 * 113.74244 * 107.74363 * 13 11 10 38 38 H 1.08996 * 113.73784 * 336.43286 * 13 11 10 39 39 H 1.09001 * 113.77237 * 137.90919 * 14 13 11 40 40 H 1.09011 * 113.76632 * 269.19158 * 14 13 11 41 41 H 0.97005 * 120.00006 * 180.02562 * 19 18 16 42 42 H 1.07999 * 123.34300 * 179.73513 * 24 5 4 43 43 H 1.09000 * 109.47116 * 90.00436 * 26 25 3 44 44 H 1.09001 * 109.46944 * 210.00563 * 26 25 3 45 45 H 1.08999 * 109.47327 * 329.99956 * 26 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 16 2.3551 2.3323 -1.4057 5 6 2.8471 3.7232 -0.4491 6 6 3.3025 5.0078 -0.9882 7 8 3.7425 5.8605 -0.2394 8 7 3.2337 5.2451 -2.3131 9 6 2.5764 4.2793 -3.1971 10 6 3.8164 6.4687 -2.8695 11 6 2.7201 7.5210 -3.0463 12 1 1.8426 7.1394 -3.5684 13 6 3.2326 8.8650 -3.5949 14 6 2.3019 9.5272 -2.5628 15 7 2.3983 8.2623 -1.8087 16 6 2.2500 7.9164 -0.4921 17 1 1.6908 7.0315 -0.2259 18 6 2.8183 8.7029 0.5005 19 7 2.3374 8.6663 1.7251 20 14 4.2657 9.8131 0.0982 21 1 3.8416 10.8427 -0.8843 22 1 4.7394 10.4779 1.3387 23 1 5.3667 9.0013 -0.4797 24 6 2.7432 3.4122 0.8775 25 6 2.2851 2.1358 1.1025 26 6 2.0882 1.5801 2.4894 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8901 31 1 1.8933 -0.5138 0.8899 32 1 3.2811 3.4911 -3.4622 33 1 1.7190 3.8428 -2.6847 34 1 2.2398 4.7853 -4.1019 35 1 4.2684 6.2487 -3.8367 36 1 4.5792 6.8493 -2.1901 37 1 2.9463 9.0546 -4.6294 38 1 4.2918 9.0404 -3.4068 39 1 2.7491 10.3792 -2.0508 40 1 1.3021 9.7366 -2.9435 41 1 2.7343 9.2163 2.4187 42 1 2.9929 4.1019 1.6703 43 1 3.0095 1.1033 2.8240 44 1 1.8295 2.3897 3.1719 45 1 1.2831 0.8454 2.4756 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085960481.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:07:16 Heat of formation + Delta-G solvation = 61.702001 kcal Electronic energy + Delta-G solvation = -26015.952572 eV Core-core repulsion = 22548.579360 eV Total energy + Delta-G solvation = -3467.373212 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.41028 -38.40601 -37.55193 -34.80627 -33.68562 -32.05805 -30.35975 -28.89846 -28.10310 -27.11383 -26.29679 -24.34908 -23.01328 -22.58260 -21.83168 -19.50538 -18.86807 -17.95351 -17.57782 -16.91498 -15.91918 -15.59651 -15.21633 -14.76684 -14.57182 -14.21443 -14.09536 -13.75771 -13.46100 -13.13736 -13.03419 -12.87054 -12.58727 -12.49056 -12.39902 -12.34724 -12.11485 -11.82669 -11.54909 -11.37999 -11.27169 -11.16520 -11.11522 -10.91087 -10.63188 -10.34335 -10.23666 -10.12004 -9.74055 -9.42127 -9.08085 -8.35067 -8.13751 -8.10027 -7.89688 -6.46462 -5.79151 -3.18930 0.88567 1.78499 2.20041 2.71810 3.49018 3.50708 3.61456 3.67961 3.97731 4.71354 4.74216 4.85592 4.92433 5.04576 5.17029 5.22857 5.34420 5.40615 5.42293 5.47063 5.50518 5.55127 5.68645 5.71707 5.74403 5.79492 5.83464 5.86601 5.92557 6.00146 6.00853 6.14115 6.23210 6.28688 6.30113 6.49434 6.57267 6.66694 6.76734 6.78795 7.08134 7.20740 7.84398 7.98851 8.53373 8.98915 9.01188 9.89221 10.64740 11.38589 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.017205 B = 0.004461 C = 0.003826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1627.004335 B = 6275.792802 C = 7317.457763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.049 4.049 3 C -0.234 4.234 4 S 0.189 5.811 5 C -0.236 4.236 6 C 0.560 3.440 7 O -0.448 6.448 8 N -0.614 5.614 9 C 0.070 3.930 10 C 0.124 3.876 11 C 0.115 3.885 12 H 0.050 0.950 13 C -0.151 4.151 14 C 0.093 3.907 15 N -0.605 5.605 16 C -0.199 4.199 17 H 0.069 0.931 18 C 0.057 3.943 19 N -0.899 5.899 20 Si 0.875 3.125 21 H -0.275 1.275 22 H -0.306 1.306 23 H -0.279 1.279 24 C -0.059 4.059 25 C -0.114 4.114 26 C -0.094 4.094 27 H 0.059 0.941 28 H 0.056 0.944 29 H 0.058 0.942 30 H 0.069 0.931 31 H 0.077 0.923 32 H 0.054 0.946 33 H 0.072 0.928 34 H 0.082 0.918 35 H 0.064 0.936 36 H 0.090 0.910 37 H 0.055 0.945 38 H 0.074 0.926 39 H 0.057 0.943 40 H 0.037 0.963 41 H 0.260 0.740 42 H 0.152 0.848 43 H 0.065 0.935 44 H 0.068 0.932 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.530 -16.689 -9.154 19.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.088 4.088 3 C -0.353 4.353 4 S 0.458 5.542 5 C -0.356 4.356 6 C 0.345 3.655 7 O -0.319 6.319 8 N -0.350 5.350 9 C -0.076 4.076 10 C 0.001 3.999 11 C 0.008 3.992 12 H 0.068 0.932 13 C -0.190 4.190 14 C -0.031 4.031 15 N -0.333 5.333 16 C -0.327 4.327 17 H 0.086 0.914 18 C -0.144 4.144 19 N -0.541 5.541 20 Si 0.705 3.295 21 H -0.202 1.202 22 H -0.234 1.234 23 H -0.205 1.205 24 C -0.091 4.091 25 C -0.127 4.127 26 C -0.152 4.152 27 H 0.078 0.922 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.088 0.912 31 H 0.096 0.904 32 H 0.073 0.927 33 H 0.089 0.911 34 H 0.101 0.899 35 H 0.082 0.918 36 H 0.108 0.892 37 H 0.074 0.926 38 H 0.093 0.907 39 H 0.075 0.925 40 H 0.055 0.945 41 H 0.070 0.930 42 H 0.170 0.830 43 H 0.084 0.916 44 H 0.087 0.913 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -0.392 -16.539 -9.841 19.249 hybrid contribution 0.738 0.834 1.400 1.789 sum 0.346 -15.705 -8.441 17.833 Atomic orbital electron populations 1.21784 0.94529 1.01580 1.02662 1.20020 0.96007 0.90062 1.02691 1.24387 1.09387 1.01982 0.99497 1.83191 1.61853 1.02285 1.06827 1.24755 1.14302 0.98961 0.97629 1.16913 0.81484 0.84987 0.82075 1.91090 1.41979 1.42493 1.56351 1.47364 1.59317 1.21883 1.06407 1.21788 0.97540 0.92646 0.95615 1.21733 0.96785 0.83706 0.97672 1.23007 0.94317 0.91906 0.89960 0.93247 1.23607 1.00078 0.97768 0.97538 1.23015 0.95919 0.92953 0.91258 1.46072 1.81554 1.03939 1.01774 1.18072 1.26492 1.10693 0.77395 0.91393 1.25444 0.96764 0.97831 0.94410 1.69856 1.40636 1.41209 1.02350 0.87096 0.86098 0.80128 0.76129 1.20243 1.23382 1.20498 1.20642 0.97168 0.95606 0.95722 1.18602 1.03892 0.94041 0.96177 1.20502 1.01516 1.00907 0.92305 0.92212 0.92450 0.92341 0.91238 0.90446 0.92728 0.91054 0.89941 0.91790 0.89188 0.92602 0.90741 0.92543 0.94549 0.93011 0.83037 0.91634 0.91325 0.91836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 9.89 37.16 0.37 -0.94 16 2 C -0.05 -0.47 5.72 -27.88 -0.16 -0.63 16 3 C -0.23 -3.02 5.53 -35.86 -0.20 -3.22 16 4 S 0.19 2.49 17.85 -107.50 -1.92 0.57 16 5 C -0.24 -4.30 6.20 -36.80 -0.23 -4.53 16 6 C 0.56 11.95 6.91 -12.90 -0.09 11.86 16 7 O -0.45 -11.84 12.94 5.18 0.07 -11.78 16 8 N -0.61 -11.10 2.88 -183.16 -0.53 -11.63 16 9 C 0.07 0.91 8.83 59.85 0.53 1.44 16 10 C 0.12 2.28 5.30 -4.04 -0.02 2.26 16 11 C 0.11 2.25 4.53 -66.74 -0.30 1.95 16 12 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 13 C -0.15 -2.69 7.86 -25.79 -0.20 -2.90 16 14 C 0.09 2.02 8.02 -2.98 -0.02 1.99 16 15 N -0.61 -15.08 2.79 -169.73 -0.47 -15.56 16 16 C -0.20 -5.87 7.64 -15.06 -0.12 -5.98 16 17 H 0.07 2.24 7.23 -52.48 -0.38 1.86 16 18 C 0.06 1.73 5.41 -17.43 -0.09 1.64 16 19 N -0.90 -29.00 13.97 55.49 0.78 -28.23 16 20 Si 0.87 23.83 27.18 -169.99 -4.62 19.21 16 21 H -0.27 -7.02 5.24 56.52 0.30 -6.72 16 22 H -0.31 -8.46 7.11 56.52 0.40 -8.05 16 23 H -0.28 -7.69 7.11 56.52 0.40 -7.29 16 24 C -0.06 -1.07 9.80 -40.44 -0.40 -1.46 16 25 C -0.11 -1.67 5.78 -106.46 -0.62 -2.28 16 26 C -0.09 -1.10 9.55 36.01 0.34 -0.76 16 27 H 0.06 0.57 7.80 -51.93 -0.41 0.17 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.08 0.68 7.25 -51.93 -0.38 0.30 16 32 H 0.05 0.60 7.45 -51.93 -0.39 0.21 16 33 H 0.07 0.95 5.20 -28.39 -0.15 0.80 16 34 H 0.08 0.91 8.03 -51.93 -0.42 0.49 16 35 H 0.06 0.91 8.12 -51.93 -0.42 0.49 16 36 H 0.09 1.98 7.30 -51.93 -0.38 1.60 16 37 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.07 1.34 8.10 -51.93 -0.42 0.92 16 39 H 0.06 1.32 4.94 -51.93 -0.26 1.06 16 40 H 0.04 0.75 8.14 -51.92 -0.42 0.33 16 41 H 0.26 8.03 8.31 -40.82 -0.34 7.69 16 42 H 0.15 2.98 8.06 -52.49 -0.42 2.55 16 43 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.07 0.83 8.13 -51.93 -0.42 0.41 16 45 H 0.06 0.64 6.86 -51.93 -0.36 0.28 16 LS Contribution 363.82 15.07 5.48 5.48 Total: -1.00 -35.54 363.82 -9.41 -44.96 By element: Atomic # 1 Polarization: 5.51 SS G_CDS: -6.99 Total: -1.48 kcal Atomic # 6 Polarization: -0.33 SS G_CDS: -1.21 Total: -1.54 kcal Atomic # 7 Polarization: -55.19 SS G_CDS: -0.23 Total: -55.41 kcal Atomic # 8 Polarization: -11.84 SS G_CDS: 0.07 Total: -11.78 kcal Atomic # 14 Polarization: 23.83 SS G_CDS: -4.62 Total: 19.21 kcal Atomic # 16 Polarization: 2.49 SS G_CDS: -1.92 Total: 0.57 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -35.54 -9.41 -44.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085960481.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.658 kcal (2) G-P(sol) polarization free energy of solvation -35.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.956 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds