Wall clock time and date at job start Tue Mar 31 2020 13:07:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50702 * 109.46805 * 2 1 4 4 S 1.70615 * 124.52166 * 269.97386 * 3 2 1 5 5 C 1.75838 * 91.56163 * 180.02562 * 4 3 2 6 6 C 1.46573 * 125.45852 * 179.97438 * 5 4 3 7 7 O 1.21705 * 120.00264 * 187.11510 * 6 5 4 8 8 N 1.34775 * 120.00130 * 7.12575 * 6 5 4 9 9 C 1.46505 * 120.00207 * 6.42188 * 8 6 5 10 10 C 1.46506 * 120.00229 * 186.42757 * 8 6 5 11 11 C 1.52991 * 109.47142 * 262.64046 * 10 8 6 12 12 H 1.09000 * 113.04247 * 310.30197 * 11 10 8 13 13 C 1.53948 * 113.76972 * 178.55684 * 11 10 8 14 14 C 1.53946 * 86.28934 * 222.09288 * 13 11 10 15 15 N 1.47579 * 86.24290 * 23.54683 * 14 13 11 16 16 C 1.36934 * 134.49112 * 155.42432 * 15 14 13 17 17 H 1.08005 * 119.99984 * 135.93461 * 16 15 14 18 18 C 1.38805 * 120.00156 * 315.93296 * 16 15 14 19 19 N 1.31620 * 119.99885 * 157.15789 * 18 16 15 20 20 Si 1.86802 * 120.00291 * 337.15695 * 18 16 15 21 21 H 1.48504 * 109.46592 * 63.53973 * 20 18 16 22 22 H 1.48495 * 109.47147 * 183.54113 * 20 18 16 23 23 H 1.48496 * 109.47105 * 303.54388 * 20 18 16 24 24 C 1.36652 * 109.07854 * 0.26816 * 5 4 3 25 25 C 1.33815 * 124.52059 * 90.00623 * 3 2 1 26 26 C 1.50702 * 122.44865 * 359.97438 * 25 3 2 27 27 H 1.09000 * 109.47540 * 299.99900 * 1 2 3 28 28 H 1.08999 * 109.47633 * 60.00151 * 1 2 3 29 29 H 1.09006 * 109.47409 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46693 * 240.00347 * 2 1 3 31 31 H 1.08996 * 109.46990 * 120.00206 * 2 1 3 32 32 H 1.08999 * 109.46852 * 276.17854 * 9 8 6 33 33 H 1.09000 * 109.46395 * 36.17377 * 9 8 6 34 34 H 1.08998 * 109.47214 * 156.16717 * 9 8 6 35 35 H 1.09003 * 109.46785 * 142.63783 * 10 8 6 36 36 H 1.09001 * 109.46703 * 22.64150 * 10 8 6 37 37 H 1.08995 * 113.74244 * 107.74363 * 13 11 10 38 38 H 1.08996 * 113.73784 * 336.43286 * 13 11 10 39 39 H 1.09001 * 113.77237 * 137.90919 * 14 13 11 40 40 H 1.09011 * 113.76632 * 269.19158 * 14 13 11 41 41 H 0.97005 * 120.00006 * 180.02562 * 19 18 16 42 42 H 1.07999 * 123.34300 * 179.73513 * 24 5 4 43 43 H 1.09000 * 109.47116 * 90.00436 * 26 25 3 44 44 H 1.09001 * 109.46944 * 210.00563 * 26 25 3 45 45 H 1.08999 * 109.47327 * 329.99956 * 26 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 16 2.3551 2.3323 -1.4057 5 6 2.8471 3.7232 -0.4491 6 6 3.3025 5.0078 -0.9882 7 8 3.7425 5.8605 -0.2394 8 7 3.2337 5.2451 -2.3131 9 6 2.5764 4.2793 -3.1971 10 6 3.8164 6.4687 -2.8695 11 6 2.7201 7.5210 -3.0463 12 1 1.8426 7.1394 -3.5684 13 6 3.2326 8.8650 -3.5949 14 6 2.3019 9.5272 -2.5628 15 7 2.3983 8.2623 -1.8087 16 6 2.2500 7.9164 -0.4921 17 1 1.6908 7.0315 -0.2259 18 6 2.8183 8.7029 0.5005 19 7 2.3374 8.6663 1.7251 20 14 4.2657 9.8131 0.0982 21 1 3.8416 10.8427 -0.8843 22 1 4.7394 10.4779 1.3387 23 1 5.3667 9.0013 -0.4797 24 6 2.7432 3.4122 0.8775 25 6 2.2851 2.1358 1.1025 26 6 2.0882 1.5801 2.4894 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8901 31 1 1.8933 -0.5138 0.8899 32 1 3.2811 3.4911 -3.4622 33 1 1.7190 3.8428 -2.6847 34 1 2.2398 4.7853 -4.1019 35 1 4.2684 6.2487 -3.8367 36 1 4.5792 6.8493 -2.1901 37 1 2.9463 9.0546 -4.6294 38 1 4.2918 9.0404 -3.4068 39 1 2.7491 10.3792 -2.0508 40 1 1.3021 9.7366 -2.9435 41 1 2.7343 9.2163 2.4187 42 1 2.9929 4.1019 1.6703 43 1 3.0095 1.1033 2.8240 44 1 1.8295 2.3897 3.1719 45 1 1.2831 0.8454 2.4756 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085960481.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:07:15 Heat of formation + Delta-G solvation = 37.930534 kcal Electronic energy + Delta-G solvation = -26016.983380 eV Core-core repulsion = 22548.579360 eV Total energy + Delta-G solvation = -3468.404020 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.93949 -39.74054 -39.08293 -36.35267 -34.64896 -34.28115 -31.54062 -30.47287 -29.84140 -28.15932 -27.59164 -25.68866 -24.98913 -23.79844 -23.03813 -20.87000 -20.58956 -19.19919 -19.06336 -18.76453 -17.30578 -17.05038 -16.90456 -16.36292 -15.85142 -15.58016 -15.30810 -15.08860 -15.03858 -14.75156 -14.44557 -14.27266 -14.10453 -13.88557 -13.61283 -13.39040 -13.12949 -13.05587 -13.02771 -12.85920 -12.75033 -12.55421 -12.50743 -12.19867 -12.07230 -11.97045 -11.93379 -11.59675 -11.48968 -11.33758 -10.74045 -10.34276 -9.68711 -9.34887 -9.14738 -8.47205 -8.11156 -5.46200 -0.38914 0.56859 1.03584 1.27937 1.38776 1.44609 1.46600 2.10274 2.45204 2.51333 3.07615 3.32258 3.71305 3.80770 3.89376 4.13764 4.18344 4.22491 4.26208 4.41020 4.44068 4.46391 4.50652 4.51746 4.57143 4.70452 4.78297 4.78990 4.82199 4.87435 4.95585 4.97110 5.01446 5.05183 5.06687 5.11596 5.17092 5.34602 5.45492 5.56284 5.60180 5.76401 5.87761 6.30387 6.52962 6.75515 7.45343 7.60682 8.50920 9.13476 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.017205 B = 0.004461 C = 0.003826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1627.004335 B = 6275.792802 C = 7317.457763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.050 4.050 3 C -0.221 4.221 4 S 0.283 5.717 5 C -0.290 4.290 6 C 0.553 3.447 7 O -0.524 6.524 8 N -0.614 5.614 9 C 0.061 3.939 10 C 0.124 3.876 11 C 0.115 3.885 12 H 0.072 0.928 13 C -0.123 4.123 14 C 0.083 3.917 15 N -0.640 5.640 16 C -0.164 4.164 17 H 0.015 0.985 18 C -0.009 4.009 19 N -0.958 5.958 20 Si 0.932 3.068 21 H -0.243 1.243 22 H -0.316 1.316 23 H -0.288 1.288 24 C -0.077 4.077 25 C -0.137 4.137 26 C -0.090 4.090 27 H 0.048 0.952 28 H 0.053 0.947 29 H 0.083 0.917 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.084 0.916 33 H 0.067 0.933 34 H 0.115 0.885 35 H 0.120 0.880 36 H 0.045 0.955 37 H 0.108 0.892 38 H 0.074 0.926 39 H 0.038 0.962 40 H 0.055 0.945 41 H 0.254 0.746 42 H 0.110 0.890 43 H 0.077 0.923 44 H 0.052 0.948 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.904 -19.341 -13.980 23.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.089 4.089 3 C -0.340 4.340 4 S 0.553 5.447 5 C -0.410 4.410 6 C 0.340 3.660 7 O -0.400 6.400 8 N -0.348 5.348 9 C -0.083 4.083 10 C 0.000 4.000 11 C 0.010 3.990 12 H 0.089 0.911 13 C -0.161 4.161 14 C -0.041 4.041 15 N -0.369 5.369 16 C -0.293 4.293 17 H 0.033 0.967 18 C -0.204 4.204 19 N -0.604 5.604 20 Si 0.762 3.238 21 H -0.169 1.169 22 H -0.245 1.245 23 H -0.215 1.215 24 C -0.110 4.110 25 C -0.149 4.149 26 C -0.149 4.149 27 H 0.067 0.933 28 H 0.072 0.928 29 H 0.102 0.898 30 H 0.111 0.889 31 H 0.111 0.889 32 H 0.102 0.898 33 H 0.085 0.915 34 H 0.133 0.867 35 H 0.138 0.862 36 H 0.064 0.936 37 H 0.127 0.873 38 H 0.092 0.908 39 H 0.056 0.944 40 H 0.072 0.928 41 H 0.063 0.937 42 H 0.128 0.872 43 H 0.096 0.904 44 H 0.072 0.928 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -0.779 -19.204 -14.783 24.247 hybrid contribution 0.722 1.410 2.722 3.149 sum -0.057 -17.793 -12.061 21.496 Atomic orbital electron populations 1.21798 0.93674 1.03070 1.02005 1.20237 0.96551 0.87509 1.04628 1.25016 1.06498 1.03478 0.99009 1.82562 1.59352 0.98015 1.04756 1.24682 1.16987 1.00425 0.98940 1.17507 0.80135 0.85433 0.82931 1.91041 1.45532 1.45215 1.58218 1.47532 1.58669 1.22602 1.05957 1.22151 0.97790 0.92754 0.95585 1.21746 0.95526 0.83713 0.98975 1.23210 0.95483 0.93307 0.87029 0.91076 1.23419 0.99052 0.94546 0.99095 1.23206 0.97900 0.91115 0.91838 1.46413 1.82118 1.06724 1.01596 1.17605 1.23846 1.07821 0.80028 0.96702 1.25983 0.99443 1.00611 0.94341 1.70000 1.42736 1.44032 1.03633 0.86125 0.82658 0.78986 0.76005 1.16914 1.24496 1.21462 1.20626 0.98364 0.96839 0.95218 1.18692 1.04991 0.92861 0.98312 1.20528 1.02972 1.00877 0.90523 0.93321 0.92756 0.89824 0.88947 0.88936 0.89770 0.91466 0.86659 0.86242 0.93605 0.87334 0.90780 0.94398 0.92761 0.93726 0.87209 0.90389 0.92844 0.89471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 9.89 71.98 0.71 -1.37 16 2 C -0.05 -0.77 5.72 29.85 0.17 -0.60 16 3 C -0.22 -5.25 5.53 24.68 0.14 -5.11 16 4 S 0.28 6.79 17.85 -56.49 -1.01 5.78 16 5 C -0.29 -11.08 6.20 24.07 0.15 -10.93 16 6 C 0.55 24.96 6.91 86.42 0.60 25.56 16 7 O -0.52 -30.35 12.94 -4.37 -0.06 -30.41 16 8 N -0.61 -21.70 2.88 -851.61 -2.45 -24.15 16 9 C 0.06 1.37 8.83 127.77 1.13 2.49 16 10 C 0.12 4.31 5.30 86.38 0.46 4.77 16 11 C 0.12 4.22 4.53 45.05 0.20 4.43 16 12 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 13 C -0.12 -3.85 7.86 31.25 0.25 -3.60 16 14 C 0.08 3.44 8.02 86.48 0.69 4.14 16 15 N -0.64 -32.03 2.79 -690.89 -1.93 -33.96 16 16 C -0.16 -10.23 7.64 84.03 0.64 -9.59 16 17 H 0.02 1.10 7.23 -2.91 -0.02 1.08 16 18 C -0.01 -0.57 5.41 84.86 0.46 -0.11 16 19 N -0.96 -66.89 13.97 21.65 0.30 -66.59 16 20 Si 0.93 51.91 27.18 68.60 1.86 53.77 16 21 H -0.24 -12.09 5.24 99.48 0.52 -11.57 16 22 H -0.32 -17.93 7.11 99.48 0.71 -17.22 16 23 H -0.29 -16.23 7.11 99.48 0.71 -15.53 16 24 C -0.08 -3.01 9.80 21.72 0.21 -2.80 16 25 C -0.14 -4.07 5.78 -21.05 -0.12 -4.19 16 26 C -0.09 -2.14 9.55 71.24 0.68 -1.46 16 27 H 0.05 0.80 7.80 -2.39 -0.02 0.79 16 28 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.08 0.80 8.14 -2.38 -0.02 0.78 16 30 H 0.09 1.06 8.14 -2.38 -0.02 1.04 16 31 H 0.09 1.22 7.25 -2.39 -0.02 1.21 16 32 H 0.08 1.44 7.45 -2.39 -0.02 1.42 16 33 H 0.07 1.59 5.20 -17.35 -0.09 1.50 16 34 H 0.12 1.89 8.03 -2.39 -0.02 1.87 16 35 H 0.12 2.84 8.12 -2.39 -0.02 2.82 16 36 H 0.05 2.04 7.30 -2.39 -0.02 2.02 16 37 H 0.11 2.39 8.14 -2.39 -0.02 2.37 16 38 H 0.07 2.38 8.10 -2.39 -0.02 2.36 16 39 H 0.04 1.71 4.94 -2.39 -0.01 1.70 16 40 H 0.05 2.07 8.14 -2.38 -0.02 2.05 16 41 H 0.25 17.01 8.31 -92.70 -0.77 16.24 16 42 H 0.11 5.08 8.06 -2.91 -0.02 5.06 16 43 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 44 H 0.05 1.40 8.13 -2.39 -0.02 1.38 16 45 H 0.09 1.61 6.86 -2.39 -0.02 1.59 16 Total: -1.00 -90.05 363.82 3.81 -86.24 By element: Atomic # 1 Polarization: 6.96 SS G_CDS: 0.72 Total: 7.68 kcal Atomic # 6 Polarization: -4.74 SS G_CDS: 6.37 Total: 1.63 kcal Atomic # 7 Polarization: -120.62 SS G_CDS: -4.08 Total: -124.69 kcal Atomic # 8 Polarization: -30.35 SS G_CDS: -0.06 Total: -30.41 kcal Atomic # 14 Polarization: 51.91 SS G_CDS: 1.86 Total: 53.77 kcal Atomic # 16 Polarization: 6.79 SS G_CDS: -1.01 Total: 5.78 kcal Total: -90.05 3.81 -86.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085960481.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.172 kcal (2) G-P(sol) polarization free energy of solvation -90.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.242 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds