Wall clock time and date at job start Tue Mar 31 2020 13:13:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50694 * 109.47393 * 2 1 4 4 C 1.37476 * 122.44767 * 265.02060 * 3 2 1 5 5 C 1.36651 * 113.29777 * 179.97438 * 4 3 2 6 6 C 1.46579 * 125.45905 * 179.97438 * 5 4 3 7 7 O 1.21701 * 119.99741 * 7.77257 * 6 5 4 8 8 N 1.34778 * 120.00239 * 187.77856 * 6 5 4 9 9 C 1.46503 * 119.99707 * 5.49130 * 8 6 5 10 10 C 1.46498 * 120.00209 * 185.49145 * 8 6 5 11 11 C 1.53005 * 109.46900 * 275.41342 * 10 8 6 12 12 H 1.08997 * 113.04348 * 67.39420 * 11 10 8 13 13 C 1.53945 * 113.76810 * 295.63855 * 11 10 8 14 14 C 1.53941 * 86.29293 * 222.09484 * 13 11 10 15 15 N 1.47583 * 86.23863 * 23.55426 * 14 13 11 16 16 C 1.36938 * 134.49827 * 155.42934 * 15 14 13 17 17 H 1.07994 * 120.00409 * 185.43682 * 16 15 14 18 18 C 1.38819 * 119.99648 * 5.43084 * 16 15 14 19 19 N 1.31621 * 119.99792 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 120.00101 * 180.02562 * 18 16 15 21 21 H 1.48492 * 109.47053 * 0.02562 * 20 18 16 22 22 H 1.48497 * 109.47028 * 120.00224 * 20 18 16 23 23 H 1.48502 * 109.46973 * 240.00085 * 20 18 16 24 24 S 1.75832 * 109.08261 * 0.22627 * 5 4 3 25 25 C 1.33819 * 122.45303 * 84.99210 * 3 2 1 26 26 C 1.50702 * 124.51944 * 0.02970 * 25 3 2 27 27 H 1.08994 * 109.47439 * 300.00898 * 1 2 3 28 28 H 1.09005 * 109.46133 * 60.00357 * 1 2 3 29 29 H 1.08998 * 109.47053 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47439 * 239.99102 * 2 1 3 31 31 H 1.09006 * 109.46650 * 119.99719 * 2 1 3 32 32 H 1.07992 * 123.35063 * 359.97438 * 4 3 2 33 33 H 1.09008 * 109.47034 * 275.75829 * 9 8 6 34 34 H 1.09002 * 109.47111 * 35.75726 * 9 8 6 35 35 H 1.08998 * 109.47219 * 155.75881 * 9 8 6 36 36 H 1.08998 * 109.46942 * 155.41312 * 10 8 6 37 37 H 1.08996 * 109.46680 * 35.41135 * 10 8 6 38 38 H 1.08996 * 113.74217 * 107.74590 * 13 11 10 39 39 H 1.09007 * 113.74279 * 336.44423 * 13 11 10 40 40 H 1.08997 * 113.76811 * 137.90499 * 14 13 11 41 41 H 1.08999 * 113.77075 * 269.19887 * 14 13 11 42 42 H 0.96999 * 119.99958 * 179.97438 * 19 18 16 43 43 H 1.09000 * 109.47579 * 89.99667 * 26 25 3 44 44 H 1.09006 * 109.46819 * 209.99578 * 26 25 3 45 45 H 1.08994 * 109.47107 * 329.98960 * 26 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.3733 2.0826 -1.1558 5 6 2.8047 3.3610 -0.9393 6 6 3.2336 4.3011 -1.9789 7 8 3.0907 4.0163 -3.1534 8 7 3.7865 5.4810 -1.6340 9 6 4.0693 5.7738 -0.2267 10 6 4.1046 6.4705 -2.6664 11 6 5.4775 6.1590 -3.2657 12 1 5.4931 5.2307 -3.8366 13 6 6.6369 6.2894 -2.2613 14 6 7.4136 6.9755 -3.3997 15 7 6.0934 7.3013 -3.9732 16 6 5.6277 8.2719 -4.8195 17 1 4.5703 8.3467 -5.0257 18 6 6.5150 9.1598 -5.4124 19 7 7.8037 9.0690 -5.1606 20 14 5.8798 10.4843 -6.5663 21 1 4.4033 10.3748 -6.6805 22 1 6.2363 11.8218 -6.0287 23 1 6.4947 10.3096 -7.9067 24 16 2.7698 3.6951 0.7866 25 6 2.1789 2.1306 1.1249 26 6 1.8688 1.6150 2.5066 27 1 -0.3634 0.5139 0.8898 28 1 -0.3632 0.5138 -0.8901 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8934 -0.5139 -0.8898 31 1 1.8933 -0.5138 0.8901 32 1 2.3066 1.6365 -2.1370 33 1 3.1697 6.1610 0.2518 34 1 4.3851 4.8607 0.2781 35 1 4.8636 6.5175 -0.1628 36 1 4.1190 7.4662 -2.2231 37 1 3.3487 6.4329 -3.4508 38 1 7.0612 5.3334 -1.9544 39 1 6.4174 6.9477 -1.4207 40 1 7.9813 7.8492 -3.0798 41 1 7.9995 6.2872 -4.0089 42 1 8.4237 9.6892 -5.5752 43 1 2.7593 1.1497 2.9292 44 1 1.5556 2.4436 3.1418 45 1 1.0671 0.8788 2.4482 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085961457.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:13:06 Heat of formation + Delta-G solvation = 48.249543 kcal Electronic energy + Delta-G solvation = -24895.869444 eV Core-core repulsion = 21427.912890 eV Total energy + Delta-G solvation = -3467.956554 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.91220 -38.79645 -37.65823 -35.22386 -33.11460 -32.12552 -31.75243 -29.15686 -27.82594 -27.30484 -26.12193 -24.13481 -23.57129 -23.24382 -21.83406 -19.74874 -19.05582 -18.40979 -17.89912 -16.65125 -16.32441 -15.76939 -15.58153 -15.06355 -14.66143 -14.51929 -14.30748 -13.96542 -13.61766 -13.50921 -13.39305 -13.09724 -12.95033 -12.83695 -12.60438 -12.33162 -12.23100 -12.08844 -11.79963 -11.61571 -11.37527 -11.23511 -11.05589 -10.87668 -10.72167 -10.48002 -10.40348 -9.89466 -9.82991 -9.66677 -9.47054 -8.81271 -8.73446 -8.49046 -8.29543 -6.81878 -5.72649 -3.04053 0.44563 1.38170 1.81567 2.25613 3.06296 3.31046 3.41892 3.47918 3.50032 4.47566 4.53072 4.55525 4.77940 4.83159 4.97547 5.00273 5.09398 5.19904 5.21246 5.28419 5.36622 5.41002 5.47346 5.53707 5.54810 5.61979 5.63362 5.67889 5.77652 5.90394 5.95402 5.98963 6.18024 6.21866 6.27439 6.33559 6.45184 6.62118 6.74301 6.86837 7.29966 7.44162 7.52899 7.62429 8.02976 8.28031 9.10011 9.75822 10.66560 11.45212 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.028349 B = 0.002691 C = 0.002605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.455069 B =10401.727952 C =10746.876643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.064 4.064 3 C -0.120 4.120 4 C -0.050 4.050 5 C -0.260 4.260 6 C 0.583 3.417 7 O -0.525 6.525 8 N -0.602 5.602 9 C 0.062 3.938 10 C 0.122 3.878 11 C 0.129 3.871 12 H 0.050 0.950 13 C -0.160 4.160 14 C 0.166 3.834 15 N -0.603 5.603 16 C -0.220 4.220 17 H 0.080 0.920 18 C -0.008 4.008 19 N -0.921 5.921 20 Si 0.909 3.091 21 H -0.279 1.279 22 H -0.291 1.291 23 H -0.291 1.291 24 S 0.218 5.782 25 C -0.226 4.226 26 C -0.084 4.084 27 H 0.054 0.946 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.149 0.851 33 H 0.062 0.938 34 H 0.074 0.926 35 H 0.096 0.904 36 H 0.086 0.914 37 H 0.076 0.924 38 H 0.048 0.952 39 H 0.071 0.929 40 H 0.066 0.934 41 H 0.027 0.973 42 H 0.252 0.748 43 H 0.074 0.926 44 H 0.067 0.933 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.734 -15.618 19.209 27.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.103 4.103 3 C -0.133 4.133 4 C -0.083 4.083 5 C -0.380 4.380 6 C 0.371 3.629 7 O -0.403 6.403 8 N -0.334 5.334 9 C -0.083 4.083 10 C -0.001 4.001 11 C 0.021 3.979 12 H 0.068 0.932 13 C -0.198 4.198 14 C 0.040 3.960 15 N -0.329 5.329 16 C -0.348 4.348 17 H 0.097 0.903 18 C -0.205 4.205 19 N -0.569 5.569 20 Si 0.739 3.261 21 H -0.204 1.204 22 H -0.218 1.218 23 H -0.218 1.218 24 S 0.488 5.512 25 C -0.345 4.345 26 C -0.142 4.142 27 H 0.073 0.927 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.167 0.833 33 H 0.080 0.920 34 H 0.092 0.908 35 H 0.114 0.886 36 H 0.104 0.896 37 H 0.094 0.906 38 H 0.067 0.933 39 H 0.090 0.910 40 H 0.085 0.915 41 H 0.044 0.956 42 H 0.062 0.938 43 H 0.093 0.907 44 H 0.086 0.914 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -11.415 -14.195 19.273 26.519 hybrid contribution -0.553 -0.596 -1.640 1.830 sum -11.967 -14.791 17.634 25.941 Atomic orbital electron populations 1.21749 0.94918 1.01534 1.02253 1.20232 0.95887 0.91509 1.02722 1.18592 1.04949 0.98293 0.91420 1.20573 0.96121 0.91932 0.99683 1.24563 1.16197 1.00364 0.96916 1.17007 0.77857 0.80746 0.87333 1.90848 1.56153 1.75297 1.18018 1.47651 1.61192 1.16694 1.07907 1.22035 1.02291 1.02354 0.81627 1.21813 0.98457 0.90022 0.89785 1.22575 0.91268 0.92164 0.91904 0.93237 1.23777 0.98864 0.99206 0.97984 1.22089 0.88998 0.96201 0.88673 1.46143 1.04973 1.27214 1.54608 1.19079 0.92261 1.04679 1.18775 0.90261 1.24798 0.95329 1.00027 1.00331 1.69844 1.00911 1.39064 1.47033 0.86088 0.77906 0.81424 0.80634 1.20432 1.21793 1.21785 1.83489 1.58766 1.09911 0.98988 1.24561 1.07461 1.02448 1.00009 1.20359 1.02294 1.01280 0.90258 0.92695 0.92423 0.92457 0.90955 0.91148 0.83294 0.91950 0.90821 0.88579 0.89557 0.90595 0.93328 0.91046 0.91520 0.95558 0.93772 0.90711 0.91360 0.90579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.83 37.16 0.37 -0.67 16 2 C -0.06 -0.50 5.54 -27.88 -0.15 -0.65 16 3 C -0.12 -1.22 5.04 -106.45 -0.54 -1.75 16 4 C -0.05 -0.62 9.79 -40.43 -0.40 -1.02 16 5 C -0.26 -3.49 6.20 -36.79 -0.23 -3.72 16 6 C 0.58 9.76 7.58 -12.90 -0.10 9.67 16 7 O -0.53 -10.84 16.58 5.19 0.09 -10.76 16 8 N -0.60 -9.27 2.76 -183.16 -0.51 -9.78 16 9 C 0.06 0.69 8.53 59.85 0.51 1.20 16 10 C 0.12 2.26 5.22 -4.04 -0.02 2.24 16 11 C 0.13 2.76 4.55 -66.73 -0.30 2.46 16 12 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 13 C -0.16 -3.06 7.29 -25.80 -0.19 -3.25 16 14 C 0.17 4.00 7.38 -2.98 -0.02 3.98 16 15 N -0.60 -15.71 3.58 -169.75 -0.61 -16.32 16 16 C -0.22 -6.25 10.52 -15.06 -0.16 -6.41 16 17 H 0.08 2.18 7.83 -52.49 -0.41 1.77 16 18 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 19 N -0.92 -27.78 11.53 55.49 0.64 -27.14 16 20 Si 0.91 22.54 29.55 -169.99 -5.02 17.51 16 21 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 22 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 23 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 24 S 0.22 2.10 17.85 -107.50 -1.92 0.18 16 25 C -0.23 -2.07 6.28 -35.86 -0.23 -2.30 16 26 C -0.08 -0.52 9.71 36.01 0.35 -0.17 16 27 H 0.05 0.37 7.24 -51.93 -0.38 -0.01 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 30 H 0.07 0.55 8.10 -51.93 -0.42 0.13 16 31 H 0.07 0.47 7.46 -51.93 -0.39 0.08 16 32 H 0.15 1.87 8.06 -52.49 -0.42 1.45 16 33 H 0.06 0.58 7.52 -51.92 -0.39 0.19 16 34 H 0.07 0.74 5.08 -27.18 -0.14 0.60 16 35 H 0.10 1.02 6.59 -51.93 -0.34 0.68 16 36 H 0.09 1.55 8.03 -51.93 -0.42 1.13 16 37 H 0.08 1.54 7.67 -51.93 -0.40 1.14 16 38 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.07 1.24 6.85 -51.92 -0.36 0.89 16 40 H 0.07 1.73 7.41 -51.93 -0.39 1.35 16 41 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 42 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 43 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 44 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 45 H 0.08 0.42 6.40 -51.93 -0.33 0.08 16 LS Contribution 371.69 15.07 5.60 5.60 Total: -1.00 -33.84 371.69 -9.80 -43.64 By element: Atomic # 1 Polarization: 4.65 SS G_CDS: -6.87 Total: -2.22 kcal Atomic # 6 Polarization: 0.48 SS G_CDS: -1.20 Total: -0.72 kcal Atomic # 7 Polarization: -52.77 SS G_CDS: -0.47 Total: -53.24 kcal Atomic # 8 Polarization: -10.84 SS G_CDS: 0.09 Total: -10.76 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.02 Total: 17.51 kcal Atomic # 16 Polarization: 2.10 SS G_CDS: -1.92 Total: 0.18 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -33.84 -9.80 -43.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085961457.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.892 kcal (2) G-P(sol) polarization free energy of solvation -33.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.642 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds