Wall clock time and date at job start Tue Mar 31 2020 13:13:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50694 * 109.47393 * 2 1 4 4 C 1.37476 * 122.44767 * 265.02060 * 3 2 1 5 5 C 1.36651 * 113.29777 * 179.97438 * 4 3 2 6 6 C 1.46579 * 125.45905 * 179.97438 * 5 4 3 7 7 O 1.21701 * 119.99741 * 7.77257 * 6 5 4 8 8 N 1.34778 * 120.00239 * 187.77856 * 6 5 4 9 9 C 1.46503 * 119.99707 * 5.49130 * 8 6 5 10 10 C 1.46498 * 120.00209 * 185.49145 * 8 6 5 11 11 C 1.53005 * 109.46900 * 275.41342 * 10 8 6 12 12 H 1.08997 * 113.04348 * 67.39420 * 11 10 8 13 13 C 1.53945 * 113.76810 * 295.63855 * 11 10 8 14 14 C 1.53941 * 86.29293 * 222.09484 * 13 11 10 15 15 N 1.47583 * 86.23863 * 23.55426 * 14 13 11 16 16 C 1.36938 * 134.49827 * 155.42934 * 15 14 13 17 17 H 1.07994 * 120.00409 * 185.43682 * 16 15 14 18 18 C 1.38819 * 119.99648 * 5.43084 * 16 15 14 19 19 N 1.31621 * 119.99792 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 120.00101 * 180.02562 * 18 16 15 21 21 H 1.48492 * 109.47053 * 0.02562 * 20 18 16 22 22 H 1.48497 * 109.47028 * 120.00224 * 20 18 16 23 23 H 1.48502 * 109.46973 * 240.00085 * 20 18 16 24 24 S 1.75832 * 109.08261 * 0.22627 * 5 4 3 25 25 C 1.33819 * 122.45303 * 84.99210 * 3 2 1 26 26 C 1.50702 * 124.51944 * 0.02970 * 25 3 2 27 27 H 1.08994 * 109.47439 * 300.00898 * 1 2 3 28 28 H 1.09005 * 109.46133 * 60.00357 * 1 2 3 29 29 H 1.08998 * 109.47053 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47439 * 239.99102 * 2 1 3 31 31 H 1.09006 * 109.46650 * 119.99719 * 2 1 3 32 32 H 1.07992 * 123.35063 * 359.97438 * 4 3 2 33 33 H 1.09008 * 109.47034 * 275.75829 * 9 8 6 34 34 H 1.09002 * 109.47111 * 35.75726 * 9 8 6 35 35 H 1.08998 * 109.47219 * 155.75881 * 9 8 6 36 36 H 1.08998 * 109.46942 * 155.41312 * 10 8 6 37 37 H 1.08996 * 109.46680 * 35.41135 * 10 8 6 38 38 H 1.08996 * 113.74217 * 107.74590 * 13 11 10 39 39 H 1.09007 * 113.74279 * 336.44423 * 13 11 10 40 40 H 1.08997 * 113.76811 * 137.90499 * 14 13 11 41 41 H 1.08999 * 113.77075 * 269.19887 * 14 13 11 42 42 H 0.96999 * 119.99958 * 179.97438 * 19 18 16 43 43 H 1.09000 * 109.47579 * 89.99667 * 26 25 3 44 44 H 1.09006 * 109.46819 * 209.99578 * 26 25 3 45 45 H 1.08994 * 109.47107 * 329.98960 * 26 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.3733 2.0826 -1.1558 5 6 2.8047 3.3610 -0.9393 6 6 3.2336 4.3011 -1.9789 7 8 3.0907 4.0163 -3.1534 8 7 3.7865 5.4810 -1.6340 9 6 4.0693 5.7738 -0.2267 10 6 4.1046 6.4705 -2.6664 11 6 5.4775 6.1590 -3.2657 12 1 5.4931 5.2307 -3.8366 13 6 6.6369 6.2894 -2.2613 14 6 7.4136 6.9755 -3.3997 15 7 6.0934 7.3013 -3.9732 16 6 5.6277 8.2719 -4.8195 17 1 4.5703 8.3467 -5.0257 18 6 6.5150 9.1598 -5.4124 19 7 7.8037 9.0690 -5.1606 20 14 5.8798 10.4843 -6.5663 21 1 4.4033 10.3748 -6.6805 22 1 6.2363 11.8218 -6.0287 23 1 6.4947 10.3096 -7.9067 24 16 2.7698 3.6951 0.7866 25 6 2.1789 2.1306 1.1249 26 6 1.8688 1.6150 2.5066 27 1 -0.3634 0.5139 0.8898 28 1 -0.3632 0.5138 -0.8901 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8934 -0.5139 -0.8898 31 1 1.8933 -0.5138 0.8901 32 1 2.3066 1.6365 -2.1370 33 1 3.1697 6.1610 0.2518 34 1 4.3851 4.8607 0.2781 35 1 4.8636 6.5175 -0.1628 36 1 4.1190 7.4662 -2.2231 37 1 3.3487 6.4329 -3.4508 38 1 7.0612 5.3334 -1.9544 39 1 6.4174 6.9477 -1.4207 40 1 7.9813 7.8492 -3.0798 41 1 7.9995 6.2872 -4.0089 42 1 8.4237 9.6892 -5.5752 43 1 2.7593 1.1497 2.9292 44 1 1.5556 2.4436 3.1418 45 1 1.0671 0.8788 2.4482 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085961457.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:13:05 Heat of formation + Delta-G solvation = 28.188830 kcal Electronic energy + Delta-G solvation = -24896.739342 eV Core-core repulsion = 21427.912890 eV Total energy + Delta-G solvation = -3468.826452 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.19168 -39.82793 -39.22210 -36.57205 -34.28367 -33.84735 -32.38854 -30.49652 -29.86397 -28.25112 -27.20261 -25.35330 -24.77924 -24.73994 -23.12019 -21.07998 -20.59480 -19.29337 -19.08150 -18.47628 -17.48951 -17.07411 -16.81016 -16.70053 -15.95606 -15.66421 -15.54775 -15.08154 -14.98666 -14.54563 -14.23439 -14.17857 -14.05253 -13.95228 -13.63422 -13.51922 -13.36789 -13.21010 -12.96601 -12.83487 -12.67104 -12.59810 -12.43483 -12.27663 -12.23151 -11.84604 -11.80882 -11.57723 -11.36309 -11.26162 -11.09099 -10.87263 -9.91799 -9.43397 -9.22331 -8.91748 -7.91998 -5.25026 -0.46331 0.53148 1.01080 1.35572 1.43501 1.45372 1.55351 1.83684 2.14890 2.47605 3.28121 3.39742 3.52462 3.85218 3.89937 4.05915 4.12621 4.18290 4.20852 4.24975 4.42623 4.48256 4.51233 4.54288 4.66442 4.70966 4.74878 4.76136 4.79095 4.91011 4.95889 5.00779 5.01178 5.02439 5.13450 5.17321 5.19099 5.34176 5.39769 5.48747 5.54687 5.59500 5.67699 5.92654 6.28788 6.92089 7.02569 7.59628 8.56381 9.25871 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.028349 B = 0.002691 C = 0.002605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.455069 B =10401.727952 C =10746.876643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.063 4.063 3 C -0.136 4.136 4 C -0.053 4.053 5 C -0.304 4.304 6 C 0.578 3.422 7 O -0.582 6.582 8 N -0.599 5.599 9 C 0.053 3.947 10 C 0.139 3.861 11 C 0.128 3.872 12 H 0.022 0.978 13 C -0.123 4.123 14 C 0.158 3.842 15 N -0.628 5.628 16 C -0.231 4.231 17 H 0.080 0.920 18 C -0.066 4.066 19 N -0.954 5.954 20 Si 0.976 3.024 21 H -0.267 1.267 22 H -0.286 1.286 23 H -0.295 1.295 24 S 0.277 5.723 25 C -0.214 4.214 26 C -0.087 4.087 27 H 0.060 0.940 28 H 0.040 0.960 29 H 0.071 0.929 30 H 0.067 0.933 31 H 0.088 0.912 32 H 0.132 0.868 33 H 0.087 0.913 34 H 0.089 0.911 35 H 0.107 0.893 36 H 0.097 0.903 37 H 0.049 0.951 38 H 0.076 0.924 39 H 0.099 0.901 40 H 0.045 0.955 41 H 0.007 0.993 42 H 0.249 0.751 43 H 0.090 0.910 44 H 0.083 0.917 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.007 -16.185 22.858 30.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.102 4.102 3 C -0.148 4.148 4 C -0.088 4.088 5 C -0.424 4.424 6 C 0.368 3.632 7 O -0.464 6.464 8 N -0.331 5.331 9 C -0.090 4.090 10 C 0.015 3.985 11 C 0.021 3.979 12 H 0.039 0.961 13 C -0.161 4.161 14 C 0.032 3.968 15 N -0.355 5.355 16 C -0.359 4.359 17 H 0.098 0.902 18 C -0.259 4.259 19 N -0.603 5.603 20 Si 0.805 3.195 21 H -0.191 1.191 22 H -0.213 1.213 23 H -0.223 1.223 24 S 0.548 5.452 25 C -0.334 4.334 26 C -0.145 4.145 27 H 0.080 0.920 28 H 0.060 0.940 29 H 0.090 0.910 30 H 0.086 0.914 31 H 0.107 0.893 32 H 0.150 0.850 33 H 0.105 0.895 34 H 0.107 0.893 35 H 0.126 0.874 36 H 0.116 0.884 37 H 0.067 0.933 38 H 0.094 0.906 39 H 0.117 0.883 40 H 0.063 0.937 41 H 0.025 0.975 42 H 0.058 0.942 43 H 0.108 0.892 44 H 0.102 0.898 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -12.706 -14.772 22.985 30.133 hybrid contribution -0.187 -0.531 -2.690 2.749 sum -12.893 -15.303 20.295 28.501 Atomic orbital electron populations 1.21735 0.94369 1.02363 1.01751 1.20281 0.96305 0.90209 1.03429 1.18719 1.05739 0.99528 0.90771 1.20685 0.95913 0.92077 1.00124 1.24316 1.18924 1.00200 0.98916 1.17524 0.77070 0.81186 0.87419 1.90805 1.58472 1.76581 1.20586 1.47647 1.60651 1.15697 1.09056 1.22365 1.04008 1.03611 0.78993 1.21375 0.95687 0.91290 0.90175 1.22622 0.93890 0.89534 0.91873 0.96060 1.23540 0.95580 1.00312 0.96640 1.22070 0.88613 0.95508 0.90584 1.46546 1.06420 1.27946 1.54578 1.19421 0.92490 1.05197 1.18782 0.90223 1.25629 0.95606 1.02515 1.02184 1.70019 1.01973 1.40061 1.48219 0.85041 0.77867 0.78619 0.78014 1.19141 1.21312 1.22263 1.83067 1.57629 1.09645 0.94837 1.25064 1.05014 1.02027 1.01247 1.20542 1.03448 1.02234 0.88303 0.92046 0.94044 0.90997 0.91398 0.89315 0.84974 0.89510 0.89347 0.87423 0.88428 0.93283 0.90594 0.88268 0.93684 0.97548 0.94232 0.89160 0.89845 0.89402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.76 9.83 71.98 0.71 -1.05 16 2 C -0.06 -0.86 5.54 29.85 0.17 -0.69 16 3 C -0.14 -2.52 5.04 -21.05 -0.11 -2.63 16 4 C -0.05 -1.34 9.79 21.72 0.21 -1.13 16 5 C -0.30 -7.99 6.20 24.08 0.15 -7.84 16 6 C 0.58 19.75 7.58 86.42 0.66 20.41 16 7 O -0.58 -25.58 16.58 -4.35 -0.07 -25.65 16 8 N -0.60 -18.03 2.76 -851.60 -2.35 -20.39 16 9 C 0.05 1.02 8.53 127.77 1.09 2.11 16 10 C 0.14 5.18 5.22 86.38 0.45 5.63 16 11 C 0.13 5.59 4.55 45.05 0.21 5.79 16 12 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 13 C -0.12 -4.54 7.29 31.25 0.23 -4.31 16 14 C 0.16 7.78 7.38 86.48 0.64 8.42 16 15 N -0.63 -33.52 3.58 -690.98 -2.48 -36.00 16 16 C -0.23 -13.36 10.52 84.03 0.88 -12.48 16 17 H 0.08 4.48 7.83 -2.91 -0.02 4.46 16 18 C -0.07 -3.90 5.50 84.86 0.47 -3.43 16 19 N -0.95 -59.01 11.53 21.65 0.25 -58.76 16 20 Si 0.98 47.12 29.55 68.60 2.03 49.15 16 21 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 22 H -0.29 -13.52 7.11 99.48 0.71 -12.82 16 23 H -0.30 -14.38 7.11 99.48 0.71 -13.67 16 24 S 0.28 4.47 17.85 -56.49 -1.01 3.46 16 25 C -0.21 -3.22 6.28 24.68 0.15 -3.06 16 26 C -0.09 -0.69 9.71 71.24 0.69 0.00 16 27 H 0.06 0.66 7.24 -2.39 -0.02 0.64 16 28 H 0.04 0.63 8.14 -2.38 -0.02 0.61 16 29 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.07 0.98 8.10 -2.39 -0.02 0.96 16 31 H 0.09 0.89 7.46 -2.38 -0.02 0.87 16 32 H 0.13 3.61 8.06 -2.91 -0.02 3.58 16 33 H 0.09 1.28 7.52 -2.38 -0.02 1.26 16 34 H 0.09 1.45 5.08 -18.12 -0.09 1.36 16 35 H 0.11 1.86 6.59 -2.39 -0.02 1.84 16 36 H 0.10 3.42 8.03 -2.39 -0.02 3.40 16 37 H 0.05 2.08 7.67 -2.39 -0.02 2.06 16 38 H 0.08 2.43 8.14 -2.39 -0.02 2.42 16 39 H 0.10 3.15 6.85 -2.38 -0.02 3.13 16 40 H 0.04 2.40 7.41 -2.39 -0.02 2.38 16 41 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 42 H 0.25 14.87 8.31 -92.71 -0.77 14.10 16 43 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 44 H 0.08 0.47 8.14 -2.38 -0.02 0.45 16 45 H 0.09 0.56 6.40 -2.39 -0.02 0.55 16 Total: -1.00 -77.70 371.69 3.86 -73.84 By element: Atomic # 1 Polarization: 7.71 SS G_CDS: 0.90 Total: 8.61 kcal Atomic # 6 Polarization: -0.86 SS G_CDS: 6.59 Total: 5.73 kcal Atomic # 7 Polarization: -110.56 SS G_CDS: -4.58 Total: -115.14 kcal Atomic # 8 Polarization: -25.58 SS G_CDS: -0.07 Total: -25.65 kcal Atomic # 14 Polarization: 47.12 SS G_CDS: 2.03 Total: 49.15 kcal Atomic # 16 Polarization: 4.47 SS G_CDS: -1.01 Total: 3.46 kcal Total: -77.70 3.86 -73.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085961457.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.028 kcal (2) G-P(sol) polarization free energy of solvation -77.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.839 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds