Wall clock time and date at job start Tue Mar 31 2020 13:33:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.46915 * 2 1 4 4 C 1.50702 * 109.47075 * 119.99800 * 2 1 3 5 5 C 1.37469 * 123.35286 * 305.61201 * 4 2 1 6 6 C 1.33812 * 115.10501 * 180.02562 * 5 4 2 7 7 S 1.70625 * 110.94821 * 359.76392 * 6 5 4 8 8 C 1.36648 * 123.34906 * 125.63538 * 4 2 1 9 9 C 1.46580 * 125.45661 * 359.94213 * 8 4 2 10 10 O 1.21696 * 120.00430 * 6.55396 * 9 8 4 11 11 N 1.34781 * 119.99595 * 186.55368 * 9 8 4 12 12 C 1.46503 * 120.00193 * 4.99034 * 11 9 8 13 13 C 1.46502 * 120.00073 * 184.98752 * 11 9 8 14 14 C 1.53001 * 109.47051 * 276.67130 * 13 11 9 15 15 H 1.08994 * 112.96829 * 49.10482 * 14 13 11 16 16 C 1.53954 * 113.76585 * 180.78020 * 14 13 11 17 17 C 1.53940 * 86.28965 * 137.90517 * 16 14 13 18 18 N 1.47574 * 113.76735 * 277.41682 * 14 13 11 19 19 C 1.36941 * 134.49389 * 41.07140 * 18 14 13 20 20 H 1.08000 * 119.99805 * 5.99747 * 19 18 14 21 21 C 1.38812 * 120.00377 * 185.99211 * 19 18 14 22 22 N 1.31618 * 119.99553 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99962 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.47084 * 90.00308 * 23 21 19 25 25 H 1.48496 * 109.47008 * 210.00183 * 23 21 19 26 26 H 1.48493 * 109.47471 * 330.00339 * 23 21 19 27 27 H 1.08999 * 109.47227 * 300.00134 * 1 2 3 28 28 H 1.09000 * 109.47088 * 60.00067 * 1 2 3 29 29 H 1.09002 * 109.47415 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47227 * 239.99866 * 2 1 3 31 31 H 1.08999 * 109.47283 * 59.99900 * 3 2 1 32 32 H 1.08998 * 109.47121 * 179.97438 * 3 2 1 33 33 H 1.09000 * 109.47188 * 299.99872 * 3 2 1 34 34 H 1.08000 * 122.44884 * 0.04383 * 5 4 2 35 35 H 1.07993 * 124.52954 * 179.97438 * 6 5 4 36 36 H 1.08994 * 109.46940 * 175.05157 * 12 11 9 37 37 H 1.09001 * 109.46789 * 295.05235 * 12 11 9 38 38 H 1.08998 * 109.46684 * 55.05436 * 12 11 9 39 39 H 1.08998 * 109.47260 * 156.66523 * 13 11 9 40 40 H 1.09003 * 109.46961 * 36.66610 * 13 11 9 41 41 H 1.09005 * 113.73929 * 252.25311 * 16 14 13 42 42 H 1.09001 * 113.74255 * 23.45224 * 16 14 13 43 43 H 1.09003 * 113.77089 * 90.69296 * 17 16 14 44 44 H 1.08997 * 113.77252 * 221.97874 * 17 16 14 45 45 H 0.97000 * 119.99415 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 1.6538 -0.3696 2.5074 6 6 2.2011 -1.1100 3.4784 7 16 3.2353 -2.3011 2.8280 8 6 2.9097 -1.7571 1.1881 9 6 3.4829 -2.3373 -0.0299 10 8 3.2792 -1.8118 -1.1085 11 7 4.2355 -3.4529 0.0448 12 6 4.3908 -4.1474 1.3254 13 6 4.8981 -3.9712 -1.1546 14 6 3.9110 -4.8234 -1.9547 15 1 2.9534 -4.3279 -2.1144 16 6 4.5135 -5.4357 -3.2323 17 6 3.7605 -6.7230 -2.8504 18 7 3.7888 -6.2100 -1.4644 19 6 3.7275 -6.7875 -0.2243 20 1 3.6728 -6.1673 0.6581 21 6 3.7353 -8.1702 -0.1013 22 7 3.8023 -8.9260 -1.1767 23 14 3.6523 -8.9579 1.5904 24 1 2.2323 -9.1814 1.9632 25 1 4.3684 -10.2586 1.5665 26 1 4.2901 -8.0600 2.5864 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.6766 1.9564 0.8900 32 1 3.1299 1.4426 0.0005 33 1 1.6766 1.9564 -0.8900 34 1 0.9649 0.4366 2.7119 35 1 2.0107 -0.9743 4.5327 36 1 4.9554 -5.0673 1.1736 37 1 4.9250 -3.5044 2.0249 38 1 3.4076 -4.3871 1.7302 39 1 5.7522 -4.5822 -0.8626 40 1 5.2403 -3.1385 -1.7691 41 1 4.1543 -4.9737 -4.1519 42 1 5.5985 -5.5346 -3.2021 43 1 2.7577 -6.7872 -3.2728 44 1 4.3428 -7.6326 -2.9972 45 1 3.8082 -9.8922 -1.0908 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085983683.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:33:16 Heat of formation + Delta-G solvation = 55.333018 kcal Electronic energy + Delta-G solvation = -25970.490653 eV Core-core repulsion = 22502.841261 eV Total energy + Delta-G solvation = -3467.649392 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.96230 -38.50982 -37.46529 -35.06633 -33.99496 -32.24774 -30.20382 -28.36132 -27.65425 -27.09553 -26.42408 -24.47062 -23.30283 -22.57207 -21.64956 -20.25764 -19.05414 -17.88070 -17.72764 -16.81035 -15.97786 -15.80418 -15.36461 -14.92951 -14.86063 -14.16444 -13.99093 -13.78051 -13.51443 -13.38499 -13.12086 -12.88786 -12.80549 -12.58715 -12.50010 -12.37386 -12.06838 -11.53550 -11.35790 -11.21167 -11.09749 -11.06416 -10.93614 -10.79275 -10.68356 -10.55977 -10.38588 -9.94201 -9.66258 -9.38489 -9.31203 -8.77400 -8.74449 -8.47275 -8.10628 -6.81389 -5.74098 -3.06668 0.62108 1.59271 2.02395 2.44830 3.24795 3.35055 3.38740 3.43100 3.45255 4.43294 4.73403 4.80897 4.99058 5.13295 5.18387 5.27425 5.33391 5.39938 5.47903 5.53341 5.63559 5.67636 5.69456 5.72981 5.83557 5.89935 5.97978 6.00038 6.08674 6.10562 6.12963 6.14774 6.28911 6.29889 6.39342 6.50101 6.64834 6.70064 6.77161 6.97540 7.30470 7.49647 7.63244 7.69136 8.02237 8.41675 9.05282 9.73654 10.67349 11.42165 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.014514 B = 0.004441 C = 0.003743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1928.670318 B = 6303.634188 C = 7478.272649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.065 4.065 3 C -0.134 4.134 4 C -0.016 4.016 5 C -0.145 4.145 6 C -0.263 4.263 7 S 0.220 5.780 8 C -0.264 4.264 9 C 0.587 3.413 10 O -0.531 6.531 11 N -0.594 5.594 12 C 0.062 3.938 13 C 0.122 3.878 14 C 0.129 3.871 15 H 0.049 0.951 16 C -0.157 4.157 17 C 0.153 3.847 18 N -0.603 5.603 19 C -0.224 4.224 20 H 0.084 0.916 21 C -0.008 4.008 22 N -0.917 5.917 23 Si 0.901 3.099 24 H -0.290 1.290 25 H -0.290 1.290 26 H -0.280 1.280 27 H 0.050 0.950 28 H 0.058 0.942 29 H 0.054 0.946 30 H 0.121 0.879 31 H 0.049 0.951 32 H 0.053 0.947 33 H 0.057 0.943 34 H 0.135 0.865 35 H 0.160 0.840 36 H 0.114 0.886 37 H 0.055 0.945 38 H 0.071 0.929 39 H 0.086 0.914 40 H 0.074 0.926 41 H 0.051 0.949 42 H 0.074 0.926 43 H 0.021 0.979 44 H 0.078 0.922 45 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.662 16.824 6.392 18.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.086 4.086 3 C -0.191 4.191 4 C -0.032 4.032 5 C -0.176 4.176 6 C -0.400 4.400 7 S 0.490 5.510 8 C -0.384 4.384 9 C 0.375 3.625 10 O -0.411 6.411 11 N -0.324 5.324 12 C -0.083 4.083 13 C -0.001 4.001 14 C 0.021 3.979 15 H 0.067 0.933 16 C -0.196 4.196 17 C 0.028 3.972 18 N -0.330 5.330 19 C -0.352 4.352 20 H 0.102 0.898 21 C -0.205 4.205 22 N -0.565 5.565 23 Si 0.732 3.268 24 H -0.218 1.218 25 H -0.217 1.217 26 H -0.205 1.205 27 H 0.069 0.931 28 H 0.077 0.923 29 H 0.074 0.926 30 H 0.138 0.862 31 H 0.068 0.932 32 H 0.073 0.927 33 H 0.076 0.924 34 H 0.153 0.847 35 H 0.178 0.822 36 H 0.133 0.867 37 H 0.073 0.927 38 H 0.089 0.911 39 H 0.104 0.896 40 H 0.093 0.907 41 H 0.070 0.930 42 H 0.093 0.907 43 H 0.039 0.961 44 H 0.096 0.904 45 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 0.157 15.644 6.761 17.043 hybrid contribution -1.348 0.535 0.788 1.651 sum -1.192 16.178 7.549 17.893 Atomic orbital electron populations 1.21803 0.94670 1.01884 1.01360 1.20357 0.95407 0.95935 0.96854 1.21723 1.01162 0.95008 1.01234 1.19394 0.94217 0.93790 0.95776 1.19769 1.03863 1.02829 0.91151 1.25742 1.05941 1.03880 1.04388 1.83749 1.41807 1.29284 0.96113 1.24484 1.10646 1.06125 0.97193 1.16933 0.78351 0.80191 0.87026 1.90664 1.59649 1.62255 1.28565 1.47601 1.49051 1.25143 1.10649 1.22149 1.03063 0.98843 0.84224 1.21995 0.95778 0.97162 0.85145 1.22612 0.95785 0.87859 0.91612 0.93344 1.23739 1.00313 0.99670 0.95918 1.22302 0.95924 0.95257 0.83723 1.46153 1.85422 0.99884 1.01504 1.19220 1.43239 0.89645 0.83077 0.89806 1.24780 1.02825 0.96036 0.96824 1.69816 1.56505 1.03748 1.26396 0.86288 0.77642 0.79181 0.83689 1.21752 1.21659 1.20545 0.93074 0.92336 0.92650 0.86160 0.93205 0.92737 0.92381 0.84699 0.82194 0.86745 0.92687 0.91098 0.89573 0.90724 0.93031 0.90740 0.96144 0.90363 0.93789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.60 8.98 37.16 0.33 -1.27 16 2 C -0.07 -0.87 3.03 -91.77 -0.28 -1.15 16 3 C -0.13 -1.49 9.09 37.16 0.34 -1.15 16 4 C -0.02 -0.23 4.72 -105.48 -0.50 -0.73 16 5 C -0.14 -1.71 9.18 -41.42 -0.38 -2.09 16 6 C -0.26 -2.89 10.92 29.18 0.32 -2.57 16 7 S 0.22 2.71 17.70 -107.50 -1.90 0.80 16 8 C -0.26 -4.06 6.28 -36.79 -0.23 -4.29 16 9 C 0.59 10.42 7.56 -12.89 -0.10 10.33 16 10 O -0.53 -10.41 13.76 5.19 0.07 -10.34 16 11 N -0.59 -10.33 2.89 -183.16 -0.53 -10.86 16 12 C 0.06 0.96 7.04 59.85 0.42 1.39 16 13 C 0.12 2.20 5.16 -4.04 -0.02 2.18 16 14 C 0.13 2.69 4.47 -66.86 -0.30 2.39 16 15 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 16 C -0.16 -3.03 7.86 -25.79 -0.20 -3.24 16 17 C 0.15 3.63 7.68 -2.85 -0.02 3.60 16 18 N -0.60 -14.90 3.58 -169.74 -0.61 -15.50 16 19 C -0.22 -5.86 9.93 -15.06 -0.15 -6.01 16 20 H 0.08 2.02 4.30 -52.49 -0.23 1.80 16 21 C -0.01 -0.22 5.50 -17.43 -0.10 -0.31 16 22 N -0.92 -26.64 11.30 55.49 0.63 -26.02 16 23 Si 0.90 21.23 29.55 -169.99 -5.02 16.20 16 24 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 25 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 26 H -0.28 -6.18 7.11 56.52 0.40 -5.77 16 27 H 0.05 0.51 7.49 -51.93 -0.39 0.12 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.12 1.95 5.04 -51.93 -0.26 1.69 16 31 H 0.05 0.48 8.01 -51.93 -0.42 0.07 16 32 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.14 1.32 7.65 -52.49 -0.40 0.92 16 35 H 0.16 1.34 8.06 -52.49 -0.42 0.92 16 36 H 0.11 1.93 6.09 -51.93 -0.32 1.62 16 37 H 0.06 0.71 6.14 -38.49 -0.24 0.47 16 38 H 0.07 1.13 6.49 -50.86 -0.33 0.80 16 39 H 0.09 1.53 7.83 -51.93 -0.41 1.12 16 40 H 0.07 1.26 7.71 -51.93 -0.40 0.86 16 41 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 42 H 0.07 1.35 8.10 -51.93 -0.42 0.93 16 43 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.08 2.03 6.92 -51.93 -0.36 1.67 16 45 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 362.64 15.07 5.46 5.46 Total: -1.00 -30.76 362.64 -9.44 -40.20 By element: Atomic # 1 Polarization: 9.65 SS G_CDS: -6.68 Total: 2.97 kcal Atomic # 6 Polarization: -2.06 SS G_CDS: -0.86 Total: -2.92 kcal Atomic # 7 Polarization: -51.87 SS G_CDS: -0.51 Total: -52.38 kcal Atomic # 8 Polarization: -10.41 SS G_CDS: 0.07 Total: -10.34 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.20 kcal Atomic # 16 Polarization: 2.71 SS G_CDS: -1.90 Total: 0.80 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -30.76 -9.44 -40.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085983683.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.532 kcal (2) G-P(sol) polarization free energy of solvation -30.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.199 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds