Wall clock time and date at job start Tue Mar 31 2020 13:33:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.46915 * 2 1 4 4 C 1.50702 * 109.47075 * 119.99800 * 2 1 3 5 5 C 1.37469 * 123.35286 * 305.61201 * 4 2 1 6 6 C 1.33812 * 115.10501 * 180.02562 * 5 4 2 7 7 S 1.70625 * 110.94821 * 359.76392 * 6 5 4 8 8 C 1.36648 * 123.34906 * 125.63538 * 4 2 1 9 9 C 1.46580 * 125.45661 * 359.94213 * 8 4 2 10 10 O 1.21696 * 120.00430 * 6.55396 * 9 8 4 11 11 N 1.34781 * 119.99595 * 186.55368 * 9 8 4 12 12 C 1.46503 * 120.00193 * 4.99034 * 11 9 8 13 13 C 1.46502 * 120.00073 * 184.98752 * 11 9 8 14 14 C 1.53001 * 109.47051 * 276.67130 * 13 11 9 15 15 H 1.08994 * 112.96829 * 49.10482 * 14 13 11 16 16 C 1.53954 * 113.76585 * 180.78020 * 14 13 11 17 17 C 1.53940 * 86.28965 * 137.90517 * 16 14 13 18 18 N 1.47574 * 113.76735 * 277.41682 * 14 13 11 19 19 C 1.36941 * 134.49389 * 41.07140 * 18 14 13 20 20 H 1.08000 * 119.99805 * 5.99747 * 19 18 14 21 21 C 1.38812 * 120.00377 * 185.99211 * 19 18 14 22 22 N 1.31618 * 119.99553 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99962 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.47084 * 90.00308 * 23 21 19 25 25 H 1.48496 * 109.47008 * 210.00183 * 23 21 19 26 26 H 1.48493 * 109.47471 * 330.00339 * 23 21 19 27 27 H 1.08999 * 109.47227 * 300.00134 * 1 2 3 28 28 H 1.09000 * 109.47088 * 60.00067 * 1 2 3 29 29 H 1.09002 * 109.47415 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47227 * 239.99866 * 2 1 3 31 31 H 1.08999 * 109.47283 * 59.99900 * 3 2 1 32 32 H 1.08998 * 109.47121 * 179.97438 * 3 2 1 33 33 H 1.09000 * 109.47188 * 299.99872 * 3 2 1 34 34 H 1.08000 * 122.44884 * 0.04383 * 5 4 2 35 35 H 1.07993 * 124.52954 * 179.97438 * 6 5 4 36 36 H 1.08994 * 109.46940 * 175.05157 * 12 11 9 37 37 H 1.09001 * 109.46789 * 295.05235 * 12 11 9 38 38 H 1.08998 * 109.46684 * 55.05436 * 12 11 9 39 39 H 1.08998 * 109.47260 * 156.66523 * 13 11 9 40 40 H 1.09003 * 109.46961 * 36.66610 * 13 11 9 41 41 H 1.09005 * 113.73929 * 252.25311 * 16 14 13 42 42 H 1.09001 * 113.74255 * 23.45224 * 16 14 13 43 43 H 1.09003 * 113.77089 * 90.69296 * 17 16 14 44 44 H 1.08997 * 113.77252 * 221.97874 * 17 16 14 45 45 H 0.97000 * 119.99415 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 1.6538 -0.3696 2.5074 6 6 2.2011 -1.1100 3.4784 7 16 3.2353 -2.3011 2.8280 8 6 2.9097 -1.7571 1.1881 9 6 3.4829 -2.3373 -0.0299 10 8 3.2792 -1.8118 -1.1085 11 7 4.2355 -3.4529 0.0448 12 6 4.3908 -4.1474 1.3254 13 6 4.8981 -3.9712 -1.1546 14 6 3.9110 -4.8234 -1.9547 15 1 2.9534 -4.3279 -2.1144 16 6 4.5135 -5.4357 -3.2323 17 6 3.7605 -6.7230 -2.8504 18 7 3.7888 -6.2100 -1.4644 19 6 3.7275 -6.7875 -0.2243 20 1 3.6728 -6.1673 0.6581 21 6 3.7353 -8.1702 -0.1013 22 7 3.8023 -8.9260 -1.1767 23 14 3.6523 -8.9579 1.5904 24 1 2.2323 -9.1814 1.9632 25 1 4.3684 -10.2586 1.5665 26 1 4.2901 -8.0600 2.5864 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.6766 1.9564 0.8900 32 1 3.1299 1.4426 0.0005 33 1 1.6766 1.9564 -0.8900 34 1 0.9649 0.4366 2.7119 35 1 2.0107 -0.9743 4.5327 36 1 4.9554 -5.0673 1.1736 37 1 4.9250 -3.5044 2.0249 38 1 3.4076 -4.3871 1.7302 39 1 5.7522 -4.5822 -0.8626 40 1 5.2403 -3.1385 -1.7691 41 1 4.1543 -4.9737 -4.1519 42 1 5.5985 -5.5346 -3.2021 43 1 2.7577 -6.7872 -3.2728 44 1 4.3428 -7.6326 -2.9972 45 1 3.8082 -9.8922 -1.0908 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085983683.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:33:15 Heat of formation + Delta-G solvation = 38.288073 kcal Electronic energy + Delta-G solvation = -25971.229777 eV Core-core repulsion = 22502.841261 eV Total energy + Delta-G solvation = -3468.388516 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.24999 -39.83529 -38.94124 -36.45201 -34.93798 -34.24757 -31.43870 -30.01362 -29.26533 -27.98181 -27.73405 -25.64528 -25.23583 -24.01030 -22.64123 -21.51892 -20.84988 -19.16428 -18.82661 -18.59559 -17.18828 -17.04722 -16.75756 -16.63896 -16.13692 -15.69529 -15.38378 -15.10944 -14.72364 -14.48540 -14.41553 -14.36123 -14.08830 -13.85778 -13.46193 -13.38125 -13.27227 -13.07045 -12.93157 -12.91284 -12.65470 -12.46583 -12.28643 -12.16189 -12.03385 -11.90368 -11.66383 -11.48527 -11.39947 -11.19462 -10.76728 -10.58351 -9.88893 -9.62255 -9.23268 -8.81892 -7.80437 -5.14539 -0.40482 0.59090 1.08073 1.44414 1.47300 1.49651 1.57119 1.95817 2.21165 2.51197 3.35781 3.43481 3.58537 3.89170 3.98337 4.02751 4.12513 4.24070 4.30284 4.33061 4.35319 4.44724 4.49093 4.56777 4.68663 4.74875 4.79810 4.80711 4.81398 4.89180 4.97412 5.00416 5.06483 5.07536 5.19093 5.24000 5.36885 5.39330 5.43933 5.49682 5.64202 5.67412 5.75848 6.01172 6.36672 6.98616 7.09541 7.70776 8.68038 9.36330 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.014514 B = 0.004441 C = 0.003743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1928.670318 B = 6303.634188 C = 7478.272649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.071 4.071 3 C -0.127 4.127 4 C -0.014 4.014 5 C -0.156 4.156 6 C -0.242 4.242 7 S 0.238 5.762 8 C -0.311 4.311 9 C 0.581 3.419 10 O -0.561 6.561 11 N -0.601 5.601 12 C 0.064 3.936 13 C 0.131 3.869 14 C 0.132 3.868 15 H 0.027 0.973 16 C -0.131 4.131 17 C 0.144 3.856 18 N -0.623 5.623 19 C -0.222 4.222 20 H 0.102 0.898 21 C -0.071 4.071 22 N -0.956 5.956 23 Si 0.962 3.038 24 H -0.296 1.296 25 H -0.300 1.300 26 H -0.251 1.251 27 H 0.072 0.928 28 H 0.068 0.932 29 H 0.036 0.964 30 H 0.086 0.914 31 H 0.069 0.931 32 H 0.040 0.960 33 H 0.067 0.933 34 H 0.161 0.839 35 H 0.194 0.806 36 H 0.101 0.899 37 H 0.084 0.916 38 H 0.066 0.934 39 H 0.090 0.910 40 H 0.086 0.914 41 H 0.077 0.923 42 H 0.090 0.910 43 H 0.005 0.995 44 H 0.052 0.948 45 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.759 19.231 9.006 21.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.091 4.091 3 C -0.185 4.185 4 C -0.030 4.030 5 C -0.186 4.186 6 C -0.379 4.379 7 S 0.508 5.492 8 C -0.430 4.430 9 C 0.371 3.629 10 O -0.443 6.443 11 N -0.331 5.331 12 C -0.080 4.080 13 C 0.008 3.992 14 C 0.025 3.975 15 H 0.044 0.956 16 C -0.169 4.169 17 C 0.018 3.982 18 N -0.350 5.350 19 C -0.350 4.350 20 H 0.119 0.881 21 C -0.264 4.264 22 N -0.606 5.606 23 Si 0.791 3.209 24 H -0.224 1.224 25 H -0.227 1.227 26 H -0.175 1.175 27 H 0.091 0.909 28 H 0.087 0.913 29 H 0.055 0.945 30 H 0.104 0.896 31 H 0.088 0.912 32 H 0.060 0.940 33 H 0.086 0.914 34 H 0.178 0.822 35 H 0.211 0.789 36 H 0.119 0.881 37 H 0.102 0.898 38 H 0.084 0.916 39 H 0.108 0.892 40 H 0.104 0.896 41 H 0.096 0.904 42 H 0.109 0.891 43 H 0.023 0.977 44 H 0.070 0.930 45 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 0.073 18.087 9.396 20.382 hybrid contribution -1.399 -0.115 -0.019 1.404 sum -1.326 17.972 9.377 20.315 Atomic orbital electron populations 1.21769 0.93317 1.01164 1.02959 1.20337 0.96535 0.96812 0.95439 1.21672 1.00285 0.93773 1.02726 1.19699 0.93301 0.93020 0.96986 1.19956 1.04677 1.03903 0.90074 1.26135 1.03893 1.02011 1.05910 1.83507 1.42090 1.29591 0.93979 1.24407 1.12829 1.07933 0.97879 1.17340 0.77918 0.79935 0.87713 1.90646 1.60670 1.63048 1.29964 1.47682 1.49201 1.25339 1.10917 1.22157 1.02951 0.98792 0.84107 1.21790 0.94845 0.97035 0.85550 1.22622 0.95649 0.86578 0.92673 0.95564 1.23543 1.00676 0.96331 0.96388 1.22255 0.95422 0.96329 0.84146 1.46536 1.85189 1.01791 1.01452 1.19769 1.40828 0.89984 0.84396 0.88068 1.25596 1.03813 0.96816 1.00164 1.70028 1.58820 1.03264 1.28478 0.85306 0.77076 0.78122 0.80417 1.22389 1.22711 1.17512 0.90881 0.91339 0.94481 0.89614 0.91164 0.94043 0.91411 0.82187 0.78859 0.88096 0.89779 0.91574 0.89181 0.89566 0.90407 0.89101 0.97681 0.92989 0.94780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.89 8.98 71.98 0.65 -2.25 16 2 C -0.07 -1.83 3.03 -11.54 -0.03 -1.86 16 3 C -0.13 -2.62 9.09 71.98 0.65 -1.96 16 4 C -0.01 -0.36 4.72 -20.42 -0.10 -0.46 16 5 C -0.16 -3.14 9.18 21.08 0.19 -2.95 16 6 C -0.24 -4.37 10.92 66.81 0.73 -3.64 16 7 S 0.24 5.24 17.70 -56.49 -1.00 4.24 16 8 C -0.31 -9.25 6.28 24.08 0.15 -9.10 16 9 C 0.58 20.73 7.56 86.42 0.65 21.38 16 10 O -0.56 -22.59 13.76 -4.34 -0.06 -22.65 16 11 N -0.60 -20.70 2.89 -851.61 -2.46 -23.17 16 12 C 0.06 1.92 7.04 127.77 0.90 2.82 16 13 C 0.13 4.66 5.16 86.38 0.45 5.10 16 14 C 0.13 5.52 4.47 45.10 0.20 5.72 16 15 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 16 C -0.13 -4.98 7.86 31.25 0.25 -4.74 16 17 C 0.14 7.03 7.68 86.43 0.66 7.69 16 18 N -0.62 -31.30 3.58 -690.94 -2.47 -33.77 16 19 C -0.22 -11.66 9.93 84.03 0.83 -10.82 16 20 H 0.10 4.83 4.30 -2.91 -0.01 4.82 16 21 C -0.07 -3.96 5.50 84.86 0.47 -3.49 16 22 N -0.96 -57.37 11.30 21.65 0.24 -57.13 16 23 Si 0.96 43.86 29.55 68.60 2.03 45.88 16 24 H -0.30 -13.68 7.11 99.48 0.71 -12.97 16 25 H -0.30 -14.06 7.11 99.48 0.71 -13.36 16 26 H -0.25 -10.15 7.11 99.48 0.71 -9.45 16 27 H 0.07 1.23 7.49 -2.39 -0.02 1.21 16 28 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 29 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.09 2.86 5.04 -2.39 -0.01 2.85 16 31 H 0.07 1.15 8.01 -2.39 -0.02 1.13 16 32 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.16 2.39 7.65 -2.91 -0.02 2.37 16 35 H 0.19 2.19 8.06 -2.91 -0.02 2.16 16 36 H 0.10 3.30 6.09 -2.39 -0.01 3.28 16 37 H 0.08 2.00 6.14 -10.93 -0.07 1.93 16 38 H 0.07 2.04 6.49 -3.07 -0.02 2.02 16 39 H 0.09 3.13 7.83 -2.39 -0.02 3.11 16 40 H 0.09 2.87 7.71 -2.39 -0.02 2.85 16 41 H 0.08 2.57 8.14 -2.38 -0.02 2.55 16 42 H 0.09 3.19 8.10 -2.39 -0.02 3.17 16 43 H 0.01 0.27 8.14 -2.39 -0.02 0.25 16 44 H 0.05 2.81 6.92 -2.39 -0.02 2.79 16 45 H 0.24 14.34 8.31 -92.71 -0.77 13.57 16 Total: -1.00 -69.15 362.64 3.86 -65.28 By element: Atomic # 1 Polarization: 18.91 SS G_CDS: 0.93 Total: 19.85 kcal Atomic # 6 Polarization: -5.21 SS G_CDS: 6.65 Total: 1.45 kcal Atomic # 7 Polarization: -109.37 SS G_CDS: -4.69 Total: -114.06 kcal Atomic # 8 Polarization: -22.59 SS G_CDS: -0.06 Total: -22.65 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.88 kcal Atomic # 16 Polarization: 5.24 SS G_CDS: -1.00 Total: 4.24 kcal Total: -69.15 3.86 -65.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085983683.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.572 kcal (2) G-P(sol) polarization free energy of solvation -69.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.284 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds