Wall clock time and date at job start Tue Mar 31 2020 13:33:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47377 * 2 1 4 4 C 1.50700 * 109.46955 * 120.00246 * 2 1 3 5 5 C 1.37477 * 123.35113 * 305.45221 * 4 2 1 6 6 C 1.33818 * 115.10218 * 180.17961 * 5 4 2 7 7 S 1.70615 * 110.95424 * 359.58838 * 6 5 4 8 8 C 1.36650 * 123.35536 * 125.18463 * 4 2 1 9 9 C 1.46583 * 125.45567 * 0.04268 * 8 4 2 10 10 O 1.21704 * 120.00155 * 354.58482 * 9 8 4 11 11 N 1.34778 * 119.99946 * 174.58778 * 9 8 4 12 12 C 1.46500 * 119.99772 * 5.38494 * 11 9 8 13 13 C 1.46497 * 120.00298 * 185.38023 * 11 9 8 14 14 C 1.53001 * 109.46832 * 83.51844 * 13 11 9 15 15 H 1.08999 * 112.96792 * 309.29034 * 14 13 11 16 16 C 1.53945 * 113.77022 * 177.60967 * 14 13 11 17 17 C 1.53942 * 86.29456 * 222.09402 * 16 14 13 18 18 N 1.47585 * 86.11598 * 23.60862 * 17 16 14 19 19 C 1.36936 * 134.49728 * 155.36209 * 18 17 16 20 20 H 1.07997 * 120.00371 * 153.07847 * 19 18 17 21 21 C 1.38811 * 119.99478 * 333.07816 * 19 18 17 22 22 N 1.31619 * 119.99710 * 168.64688 * 21 19 18 23 23 Si 1.86802 * 120.00263 * 348.63548 * 21 19 18 24 24 H 1.48505 * 109.46790 * 84.90101 * 23 21 19 25 25 H 1.48494 * 109.47102 * 204.89961 * 23 21 19 26 26 H 1.48497 * 109.46984 * 324.90006 * 23 21 19 27 27 H 1.09003 * 109.46596 * 60.00150 * 1 2 3 28 28 H 1.08997 * 109.47003 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46946 * 299.99938 * 1 2 3 30 30 H 1.08999 * 109.47204 * 239.99580 * 2 1 3 31 31 H 1.09000 * 109.46846 * 179.97438 * 3 2 1 32 32 H 1.09003 * 109.46739 * 299.99887 * 3 2 1 33 33 H 1.08999 * 109.47296 * 59.99636 * 3 2 1 34 34 H 1.08004 * 122.44516 * 0.02562 * 5 4 2 35 35 H 1.08000 * 124.51910 * 179.85788 * 6 5 4 36 36 H 1.08995 * 109.47912 * 56.90028 * 12 11 9 37 37 H 1.08998 * 109.47263 * 176.90303 * 12 11 9 38 38 H 1.09006 * 109.47292 * 296.89669 * 12 11 9 39 39 H 1.08995 * 109.47539 * 203.52092 * 13 11 9 40 40 H 1.09004 * 109.46965 * 323.52465 * 13 11 9 41 41 H 1.08997 * 113.74112 * 336.44451 * 16 14 13 42 42 H 1.08998 * 113.73873 * 107.64052 * 16 14 13 43 43 H 1.08999 * 113.76795 * 137.90306 * 17 16 14 44 44 H 1.08999 * 113.77241 * 269.20087 * 17 16 14 45 45 H 0.97006 * 119.99777 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7105 1.2304 5 6 1.6562 -0.3677 2.5076 6 6 2.2056 -1.1065 3.4787 7 16 3.2350 -2.3015 2.8281 8 6 2.9028 -1.7629 1.1876 9 6 3.4694 -2.3487 -0.0308 10 8 3.0962 -1.9615 -1.1226 11 7 4.4036 -3.3161 0.0580 12 6 4.7674 -3.8651 1.3666 13 6 5.0553 -3.8187 -1.1540 14 6 6.2138 -2.8932 -1.5312 15 1 5.9243 -1.8431 -1.5695 16 6 7.0074 -3.3633 -2.7638 17 6 8.2701 -2.9654 -1.9782 18 7 7.4497 -3.1445 -0.7646 19 6 7.7245 -3.4294 0.5463 20 1 7.0511 -3.0993 1.3234 21 6 8.8688 -4.1426 0.8763 22 7 9.2531 -4.2256 2.1324 23 14 9.8631 -4.9848 -0.4622 24 1 10.8117 -4.0115 -1.0607 25 1 10.6215 -6.1189 0.1239 26 1 8.9463 -5.4932 -1.5140 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 3.1301 1.4423 0.0005 32 1 1.6767 1.9562 -0.8900 33 1 1.6767 1.9563 0.8899 34 1 0.9696 0.4405 2.7122 35 1 2.0185 -0.9678 4.5333 36 1 3.8762 -4.2568 1.8569 37 1 5.4923 -4.6684 1.2348 38 1 5.2046 -3.0787 1.9819 39 1 5.4371 -4.8231 -0.9715 40 1 4.3328 -3.8473 -1.9698 41 1 6.9283 -4.4335 -2.9547 42 1 6.8338 -2.7589 -3.6541 43 1 9.0864 -3.6823 -2.0663 44 1 8.5874 -1.9365 -2.1482 45 1 10.0530 -4.7236 2.3630 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085983684.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:33:20 Heat of formation + Delta-G solvation = 59.725645 kcal Electronic energy + Delta-G solvation = -26079.688776 eV Core-core repulsion = 22612.229863 eV Total energy + Delta-G solvation = -3467.458913 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.94062 -38.61569 -37.70840 -35.05002 -33.93977 -32.36111 -30.26556 -28.72037 -27.89404 -27.06369 -26.37943 -24.55797 -23.28028 -22.79239 -21.62767 -20.32694 -19.09530 -17.80650 -17.65826 -17.10207 -15.96402 -15.77958 -15.54570 -15.05061 -15.02366 -14.31895 -14.09624 -13.53204 -13.45256 -13.43262 -13.07012 -13.03865 -12.70978 -12.48528 -12.43548 -12.41824 -12.28665 -12.03239 -11.49668 -11.38788 -11.15039 -11.07235 -11.04064 -10.85898 -10.76111 -10.47070 -10.38091 -10.14335 -9.75699 -9.43690 -9.27993 -8.69882 -8.68275 -8.44006 -8.03978 -7.00387 -5.98168 -3.36218 0.70574 1.70187 2.13771 2.51556 3.28021 3.32905 3.42395 3.46094 3.49419 4.50875 4.67357 4.79837 4.87982 5.03656 5.20791 5.25689 5.30670 5.34720 5.45572 5.49012 5.65738 5.66421 5.72807 5.75774 5.79574 5.86581 5.87783 5.95265 6.03872 6.10002 6.15981 6.18501 6.20247 6.31214 6.33671 6.36555 6.43120 6.43596 6.47891 6.74553 6.84714 7.08798 7.36903 7.72650 8.30956 8.44483 8.66455 9.61351 10.35848 11.18094 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.017504 B = 0.004294 C = 0.003741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.293993 B = 6519.687292 C = 7482.445510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.067 4.067 3 C -0.137 4.137 4 C -0.018 4.018 5 C -0.147 4.147 6 C -0.266 4.266 7 S 0.236 5.764 8 C -0.268 4.268 9 C 0.588 3.412 10 O -0.538 6.538 11 N -0.592 5.592 12 C 0.069 3.931 13 C 0.122 3.878 14 C 0.133 3.867 15 H 0.057 0.943 16 C -0.146 4.146 17 C 0.097 3.903 18 N -0.618 5.618 19 C -0.232 4.232 20 H 0.093 0.907 21 C 0.025 3.975 22 N -0.915 5.915 23 Si 0.894 3.106 24 H -0.288 1.288 25 H -0.304 1.304 26 H -0.271 1.271 27 H 0.056 0.944 28 H 0.053 0.947 29 H 0.050 0.950 30 H 0.122 0.878 31 H 0.055 0.945 32 H 0.057 0.943 33 H 0.049 0.951 34 H 0.134 0.866 35 H 0.160 0.840 36 H 0.055 0.945 37 H 0.112 0.888 38 H 0.075 0.925 39 H 0.086 0.914 40 H 0.078 0.922 41 H 0.079 0.921 42 H 0.060 0.940 43 H 0.045 0.955 44 H 0.042 0.958 45 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.304 4.373 -1.240 15.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.087 4.087 3 C -0.194 4.194 4 C -0.033 4.033 5 C -0.178 4.178 6 C -0.403 4.403 7 S 0.507 5.493 8 C -0.388 4.388 9 C 0.377 3.623 10 O -0.419 6.419 11 N -0.322 5.322 12 C -0.076 4.076 13 C -0.001 4.001 14 C 0.026 3.974 15 H 0.074 0.926 16 C -0.185 4.185 17 C -0.027 4.027 18 N -0.346 5.346 19 C -0.359 4.359 20 H 0.110 0.890 21 C -0.173 4.173 22 N -0.559 5.559 23 Si 0.726 3.274 24 H -0.216 1.216 25 H -0.232 1.232 26 H -0.197 1.197 27 H 0.075 0.925 28 H 0.072 0.928 29 H 0.069 0.931 30 H 0.140 0.860 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.069 0.931 34 H 0.152 0.848 35 H 0.178 0.822 36 H 0.073 0.927 37 H 0.130 0.870 38 H 0.093 0.907 39 H 0.105 0.895 40 H 0.096 0.904 41 H 0.098 0.902 42 H 0.079 0.921 43 H 0.062 0.938 44 H 0.059 0.941 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -14.409 3.268 -0.736 14.793 hybrid contribution -0.023 0.908 -0.716 1.157 sum -14.432 4.175 -1.452 15.094 Atomic orbital electron populations 1.21772 0.94742 1.01611 1.01283 1.20378 0.95362 0.95906 0.97035 1.21756 1.01369 0.95100 1.01216 1.19358 0.94457 0.93803 0.95727 1.19747 1.04036 1.02886 0.91166 1.25808 1.05483 1.04609 1.04422 1.83963 1.40164 1.29470 0.95729 1.24469 1.10382 1.06664 0.97332 1.16943 0.78923 0.79219 0.87225 1.90635 1.61693 1.61752 1.27774 1.47564 1.38301 1.37577 1.08722 1.22056 1.00517 1.01429 0.83596 1.21890 0.93997 0.98307 0.85895 1.22686 0.88272 0.96918 0.89524 0.92559 1.23587 0.97509 1.01098 0.96336 1.22825 0.94527 0.97960 0.87413 1.46278 1.00777 1.82537 1.05020 1.18720 1.09047 1.28016 0.80100 0.89004 1.25054 0.98361 0.98305 0.95627 1.69746 1.25472 1.44400 1.16301 0.86698 0.79715 0.79208 0.81774 1.21593 1.23234 1.19723 0.92471 0.92820 0.93116 0.86036 0.92633 0.92436 0.93150 0.84838 0.82229 0.92684 0.86980 0.90708 0.89517 0.90367 0.90240 0.92115 0.93752 0.94069 0.92697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.50 8.99 37.16 0.33 -1.17 16 2 C -0.07 -0.90 3.07 -91.77 -0.28 -1.18 16 3 C -0.14 -1.65 9.09 37.16 0.34 -1.31 16 4 C -0.02 -0.26 4.72 -105.47 -0.50 -0.75 16 5 C -0.15 -1.83 9.18 -41.41 -0.38 -2.21 16 6 C -0.27 -3.17 10.92 29.18 0.32 -2.85 16 7 S 0.24 3.16 17.58 -107.50 -1.89 1.27 16 8 C -0.27 -4.26 6.33 -36.79 -0.23 -4.49 16 9 C 0.59 10.51 7.57 -12.89 -0.10 10.41 16 10 O -0.54 -10.38 13.65 5.19 0.07 -10.31 16 11 N -0.59 -10.38 2.89 -183.16 -0.53 -10.91 16 12 C 0.07 1.13 7.02 59.85 0.42 1.55 16 13 C 0.12 2.15 5.26 -4.04 -0.02 2.13 16 14 C 0.13 2.59 4.49 -66.86 -0.30 2.29 16 15 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 16 C -0.15 -2.56 7.86 -25.81 -0.20 -2.77 16 17 C 0.10 2.04 7.52 -2.97 -0.02 2.02 16 18 N -0.62 -14.28 3.20 -170.75 -0.55 -14.83 16 19 C -0.23 -6.08 9.67 -15.06 -0.15 -6.23 16 20 H 0.09 2.50 5.63 -52.49 -0.30 2.20 16 21 C 0.03 0.70 5.50 -17.43 -0.10 0.60 16 22 N -0.92 -26.80 13.97 55.49 0.78 -26.03 16 23 Si 0.89 22.06 24.74 -169.99 -4.21 17.86 16 24 H -0.29 -7.14 7.04 56.52 0.40 -6.74 16 25 H -0.30 -7.64 7.11 56.52 0.40 -7.24 16 26 H -0.27 -6.42 6.75 56.52 0.38 -6.04 16 27 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 28 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.05 0.49 7.49 -51.93 -0.39 0.10 16 30 H 0.12 1.95 4.95 -51.93 -0.26 1.70 16 31 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.05 0.54 8.00 -51.93 -0.42 0.12 16 34 H 0.13 1.39 7.66 -52.48 -0.40 0.98 16 35 H 0.16 1.49 8.06 -52.49 -0.42 1.07 16 36 H 0.06 0.76 6.42 -43.21 -0.28 0.49 16 37 H 0.11 2.02 6.90 -51.93 -0.36 1.66 16 38 H 0.07 1.33 5.49 -43.66 -0.24 1.09 16 39 H 0.09 1.52 7.77 -51.93 -0.40 1.12 16 40 H 0.08 1.28 7.55 -51.93 -0.39 0.89 16 41 H 0.08 1.34 8.10 -51.93 -0.42 0.92 16 42 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 43 H 0.04 0.98 3.68 -51.93 -0.19 0.79 16 44 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 45 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 357.11 15.07 5.38 5.38 Total: -1.00 -30.45 357.11 -8.39 -38.85 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: -6.58 Total: 2.67 kcal Atomic # 6 Polarization: -3.09 SS G_CDS: -0.87 Total: -3.95 kcal Atomic # 7 Polarization: -51.47 SS G_CDS: -0.30 Total: -51.77 kcal Atomic # 8 Polarization: -10.38 SS G_CDS: 0.07 Total: -10.31 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -4.21 Total: 17.86 kcal Atomic # 16 Polarization: 3.16 SS G_CDS: -1.89 Total: 1.27 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -30.45 -8.39 -38.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085983684.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.572 kcal (2) G-P(sol) polarization free energy of solvation -30.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.846 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds