Wall clock time and date at job start Tue Mar 31 2020 13:33:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47377 * 2 1 4 4 C 1.50700 * 109.46955 * 120.00246 * 2 1 3 5 5 C 1.37477 * 123.35113 * 305.45221 * 4 2 1 6 6 C 1.33818 * 115.10218 * 180.17961 * 5 4 2 7 7 S 1.70615 * 110.95424 * 359.58838 * 6 5 4 8 8 C 1.36650 * 123.35536 * 125.18463 * 4 2 1 9 9 C 1.46583 * 125.45567 * 0.04268 * 8 4 2 10 10 O 1.21704 * 120.00155 * 354.58482 * 9 8 4 11 11 N 1.34778 * 119.99946 * 174.58778 * 9 8 4 12 12 C 1.46500 * 119.99772 * 5.38494 * 11 9 8 13 13 C 1.46497 * 120.00298 * 185.38023 * 11 9 8 14 14 C 1.53001 * 109.46832 * 83.51844 * 13 11 9 15 15 H 1.08999 * 112.96792 * 309.29034 * 14 13 11 16 16 C 1.53945 * 113.77022 * 177.60967 * 14 13 11 17 17 C 1.53942 * 86.29456 * 222.09402 * 16 14 13 18 18 N 1.47585 * 86.11598 * 23.60862 * 17 16 14 19 19 C 1.36936 * 134.49728 * 155.36209 * 18 17 16 20 20 H 1.07997 * 120.00371 * 153.07847 * 19 18 17 21 21 C 1.38811 * 119.99478 * 333.07816 * 19 18 17 22 22 N 1.31619 * 119.99710 * 168.64688 * 21 19 18 23 23 Si 1.86802 * 120.00263 * 348.63548 * 21 19 18 24 24 H 1.48505 * 109.46790 * 84.90101 * 23 21 19 25 25 H 1.48494 * 109.47102 * 204.89961 * 23 21 19 26 26 H 1.48497 * 109.46984 * 324.90006 * 23 21 19 27 27 H 1.09003 * 109.46596 * 60.00150 * 1 2 3 28 28 H 1.08997 * 109.47003 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46946 * 299.99938 * 1 2 3 30 30 H 1.08999 * 109.47204 * 239.99580 * 2 1 3 31 31 H 1.09000 * 109.46846 * 179.97438 * 3 2 1 32 32 H 1.09003 * 109.46739 * 299.99887 * 3 2 1 33 33 H 1.08999 * 109.47296 * 59.99636 * 3 2 1 34 34 H 1.08004 * 122.44516 * 0.02562 * 5 4 2 35 35 H 1.08000 * 124.51910 * 179.85788 * 6 5 4 36 36 H 1.08995 * 109.47912 * 56.90028 * 12 11 9 37 37 H 1.08998 * 109.47263 * 176.90303 * 12 11 9 38 38 H 1.09006 * 109.47292 * 296.89669 * 12 11 9 39 39 H 1.08995 * 109.47539 * 203.52092 * 13 11 9 40 40 H 1.09004 * 109.46965 * 323.52465 * 13 11 9 41 41 H 1.08997 * 113.74112 * 336.44451 * 16 14 13 42 42 H 1.08998 * 113.73873 * 107.64052 * 16 14 13 43 43 H 1.08999 * 113.76795 * 137.90306 * 17 16 14 44 44 H 1.08999 * 113.77241 * 269.20087 * 17 16 14 45 45 H 0.97006 * 119.99777 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7105 1.2304 5 6 1.6562 -0.3677 2.5076 6 6 2.2056 -1.1065 3.4787 7 16 3.2350 -2.3015 2.8281 8 6 2.9028 -1.7629 1.1876 9 6 3.4694 -2.3487 -0.0308 10 8 3.0962 -1.9615 -1.1226 11 7 4.4036 -3.3161 0.0580 12 6 4.7674 -3.8651 1.3666 13 6 5.0553 -3.8187 -1.1540 14 6 6.2138 -2.8932 -1.5312 15 1 5.9243 -1.8431 -1.5695 16 6 7.0074 -3.3633 -2.7638 17 6 8.2701 -2.9654 -1.9782 18 7 7.4497 -3.1445 -0.7646 19 6 7.7245 -3.4294 0.5463 20 1 7.0511 -3.0993 1.3234 21 6 8.8688 -4.1426 0.8763 22 7 9.2531 -4.2256 2.1324 23 14 9.8631 -4.9848 -0.4622 24 1 10.8117 -4.0115 -1.0607 25 1 10.6215 -6.1189 0.1239 26 1 8.9463 -5.4932 -1.5140 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 3.1301 1.4423 0.0005 32 1 1.6767 1.9562 -0.8900 33 1 1.6767 1.9563 0.8899 34 1 0.9696 0.4405 2.7122 35 1 2.0185 -0.9678 4.5333 36 1 3.8762 -4.2568 1.8569 37 1 5.4923 -4.6684 1.2348 38 1 5.2046 -3.0787 1.9819 39 1 5.4371 -4.8231 -0.9715 40 1 4.3328 -3.8473 -1.9698 41 1 6.9283 -4.4335 -2.9547 42 1 6.8338 -2.7589 -3.6541 43 1 9.0864 -3.6823 -2.0663 44 1 8.5874 -1.9365 -2.1482 45 1 10.0530 -4.7236 2.3630 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085983684.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:33:19 Heat of formation + Delta-G solvation = 42.091814 kcal Electronic energy + Delta-G solvation = -26080.453436 eV Core-core repulsion = 22612.229863 eV Total energy + Delta-G solvation = -3468.223574 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.26927 -40.01032 -39.03932 -36.44745 -34.92308 -34.39725 -31.57642 -30.40973 -29.35456 -27.96975 -27.73601 -25.80053 -25.07827 -24.19763 -22.64294 -21.60443 -20.76081 -19.18686 -18.84056 -18.82084 -17.44163 -17.05106 -16.93006 -16.63948 -16.29417 -15.77565 -15.26908 -15.11217 -14.89204 -14.49660 -14.42010 -14.35725 -14.28405 -14.04171 -13.73935 -13.44366 -13.36441 -13.12636 -12.95978 -12.89257 -12.78759 -12.63147 -12.19722 -12.12301 -12.05279 -12.02094 -11.73986 -11.56511 -11.33381 -11.26690 -10.70329 -10.55994 -9.90054 -9.63838 -9.22364 -8.90922 -8.08913 -5.43307 -0.39368 0.61437 1.10782 1.34372 1.40789 1.44283 1.50999 1.96807 2.21154 2.48087 2.95393 3.24575 3.57701 3.78926 3.90012 4.03910 4.12952 4.19402 4.30743 4.32051 4.34490 4.43769 4.47117 4.50866 4.61865 4.63549 4.76090 4.78821 4.81124 4.82392 4.88870 4.91247 4.98276 4.98623 5.08472 5.18942 5.24881 5.38053 5.40635 5.45972 5.54420 5.61680 5.70545 6.23927 6.37519 6.62377 7.08844 7.53838 8.39303 9.10784 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.017504 B = 0.004294 C = 0.003741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.293993 B = 6519.687292 C = 7482.445510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.071 4.071 3 C -0.132 4.132 4 C -0.013 4.013 5 C -0.155 4.155 6 C -0.247 4.247 7 S 0.230 5.770 8 C -0.311 4.311 9 C 0.584 3.416 10 O -0.560 6.560 11 N -0.598 5.598 12 C 0.079 3.921 13 C 0.126 3.874 14 C 0.133 3.867 15 H 0.042 0.958 16 C -0.122 4.122 17 C 0.085 3.915 18 N -0.640 5.640 19 C -0.210 4.210 20 H 0.073 0.927 21 C -0.031 4.031 22 N -0.960 5.960 23 Si 0.946 3.054 24 H -0.290 1.290 25 H -0.314 1.314 26 H -0.253 1.253 27 H 0.069 0.931 28 H 0.044 0.956 29 H 0.069 0.931 30 H 0.092 0.908 31 H 0.032 0.968 32 H 0.071 0.929 33 H 0.068 0.932 34 H 0.162 0.838 35 H 0.192 0.808 36 H 0.081 0.919 37 H 0.093 0.907 38 H 0.059 0.941 39 H 0.087 0.913 40 H 0.092 0.908 41 H 0.092 0.908 42 H 0.094 0.906 43 H 0.037 0.963 44 H 0.048 0.952 45 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.220 5.178 -1.919 18.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.091 4.091 3 C -0.190 4.190 4 C -0.030 4.030 5 C -0.185 4.185 6 C -0.384 4.384 7 S 0.501 5.499 8 C -0.431 4.431 9 C 0.374 3.626 10 O -0.443 6.443 11 N -0.328 5.328 12 C -0.065 4.065 13 C 0.003 3.997 14 C 0.027 3.973 15 H 0.060 0.940 16 C -0.161 4.161 17 C -0.039 4.039 18 N -0.368 5.368 19 C -0.338 4.338 20 H 0.090 0.910 21 C -0.225 4.225 22 N -0.607 5.607 23 Si 0.777 3.223 24 H -0.218 1.218 25 H -0.243 1.243 26 H -0.178 1.178 27 H 0.088 0.912 28 H 0.063 0.937 29 H 0.088 0.912 30 H 0.110 0.890 31 H 0.051 0.949 32 H 0.090 0.910 33 H 0.087 0.913 34 H 0.179 0.821 35 H 0.209 0.791 36 H 0.099 0.901 37 H 0.111 0.889 38 H 0.077 0.923 39 H 0.105 0.895 40 H 0.110 0.890 41 H 0.111 0.889 42 H 0.113 0.887 43 H 0.055 0.945 44 H 0.066 0.934 45 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -16.346 4.074 -1.460 16.909 hybrid contribution 0.460 0.812 -0.470 1.045 sum -15.886 4.886 -1.930 16.732 Atomic orbital electron populations 1.21726 0.92615 1.01571 1.02840 1.20375 0.97106 0.96170 0.95480 1.21724 0.99862 0.94541 1.02843 1.19710 0.93315 0.92917 0.97045 1.19973 1.04630 1.03779 0.90126 1.26154 1.03461 1.02877 1.05932 1.83894 1.40850 1.30456 0.94668 1.24444 1.12462 1.08495 0.97657 1.17262 0.78635 0.78888 0.87820 1.90616 1.62472 1.62386 1.28784 1.47651 1.38395 1.37895 1.08871 1.21922 1.01066 1.00175 0.83373 1.21817 0.93692 0.97679 0.86557 1.22735 0.88018 0.96572 0.90019 0.94049 1.23450 0.93968 1.02379 0.96274 1.23029 0.95607 0.98265 0.86979 1.46556 1.03234 1.82466 1.04558 1.18716 1.07678 1.25922 0.81463 0.90963 1.25590 0.99921 0.99884 0.97123 1.69867 1.26356 1.46377 1.18114 0.85860 0.78571 0.77908 0.79954 1.21803 1.24273 1.17755 0.91245 0.93655 0.91225 0.89012 0.94913 0.91041 0.91297 0.82093 0.79095 0.90146 0.88877 0.92280 0.89488 0.88976 0.88924 0.88723 0.94496 0.93403 0.93201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.57 8.99 71.98 0.65 -1.93 16 2 C -0.07 -1.84 3.07 -11.54 -0.04 -1.87 16 3 C -0.13 -2.99 9.09 71.98 0.65 -2.34 16 4 C -0.01 -0.37 4.72 -20.42 -0.10 -0.47 16 5 C -0.15 -3.42 9.18 21.08 0.19 -3.23 16 6 C -0.25 -5.22 10.92 66.81 0.73 -4.49 16 7 S 0.23 6.02 17.58 -56.49 -0.99 5.02 16 8 C -0.31 -9.85 6.33 24.08 0.15 -9.70 16 9 C 0.58 21.16 7.57 86.42 0.65 21.81 16 10 O -0.56 -21.98 13.65 -4.36 -0.06 -22.04 16 11 N -0.60 -21.26 2.89 -851.61 -2.46 -23.72 16 12 C 0.08 2.68 7.02 127.77 0.90 3.58 16 13 C 0.13 4.35 5.26 86.38 0.45 4.81 16 14 C 0.13 5.07 4.49 45.09 0.20 5.27 16 15 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 16 C -0.12 -3.94 7.86 31.25 0.25 -3.70 16 17 C 0.09 3.43 7.52 86.48 0.65 4.08 16 18 N -0.64 -29.33 3.20 -694.13 -2.22 -31.55 16 19 C -0.21 -11.19 9.67 84.03 0.81 -10.38 16 20 H 0.07 4.08 5.63 -2.91 -0.02 4.07 16 21 C -0.03 -1.74 5.50 84.86 0.47 -1.27 16 22 N -0.96 -57.95 13.97 21.65 0.30 -57.65 16 23 Si 0.95 45.77 24.74 68.60 1.70 47.47 16 24 H -0.29 -13.98 7.04 99.48 0.70 -13.28 16 25 H -0.31 -15.53 7.11 99.48 0.71 -14.83 16 26 H -0.25 -11.30 6.75 99.48 0.67 -10.63 16 27 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 28 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.07 1.11 7.49 -2.39 -0.02 1.09 16 30 H 0.09 2.98 4.95 -2.39 -0.01 2.97 16 31 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.07 1.29 8.00 -2.39 -0.02 1.27 16 34 H 0.16 2.66 7.66 -2.91 -0.02 2.64 16 35 H 0.19 2.80 8.06 -2.91 -0.02 2.77 16 36 H 0.08 2.26 6.42 -7.93 -0.05 2.21 16 37 H 0.09 3.48 6.90 -2.39 -0.02 3.47 16 38 H 0.06 2.20 5.49 -7.64 -0.04 2.15 16 39 H 0.09 3.00 7.77 -2.39 -0.02 2.98 16 40 H 0.09 2.93 7.55 -2.38 -0.02 2.91 16 41 H 0.09 2.79 8.10 -2.39 -0.02 2.77 16 42 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 43 H 0.04 1.56 3.68 -2.39 -0.01 1.55 16 44 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 45 H 0.26 15.11 8.31 -92.70 -0.77 14.34 16 Total: -1.00 -67.26 357.11 3.78 -63.48 By element: Atomic # 1 Polarization: 17.90 SS G_CDS: 0.89 Total: 18.79 kcal Atomic # 6 Polarization: -6.43 SS G_CDS: 6.63 Total: 0.20 kcal Atomic # 7 Polarization: -108.54 SS G_CDS: -4.38 Total: -112.92 kcal Atomic # 8 Polarization: -21.98 SS G_CDS: -0.06 Total: -22.04 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 1.70 Total: 47.47 kcal Atomic # 16 Polarization: 6.02 SS G_CDS: -0.99 Total: 5.02 kcal Total: -67.26 3.78 -63.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085983684.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.572 kcal (2) G-P(sol) polarization free energy of solvation -67.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.480 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds