Wall clock time and date at job start Tue Mar 31 2020 13:28:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52999 * 109.47134 * 2 1 4 4 C 1.50697 * 109.47351 * 119.99908 * 2 1 3 5 5 C 1.33822 * 124.51938 * 120.00317 * 4 2 1 6 6 C 1.37475 * 115.09474 * 179.70788 * 5 4 2 7 7 C 1.36647 * 113.30136 * 0.49130 * 6 5 4 8 8 C 1.46580 * 125.46114 * 179.80224 * 7 6 5 9 9 O 1.21704 * 119.99536 * 7.57545 * 8 7 6 10 10 N 1.34769 * 120.00400 * 187.57610 * 8 7 6 11 11 C 1.46506 * 119.99872 * 5.73736 * 10 8 7 12 12 C 1.46502 * 120.00407 * 185.74290 * 10 8 7 13 13 C 1.52995 * 109.47525 * 97.32892 * 12 10 8 14 14 H 1.09007 * 112.96012 * 49.84233 * 13 12 10 15 15 C 1.53943 * 113.77076 * 181.51883 * 13 12 10 16 16 C 1.53946 * 86.28771 * 137.91100 * 15 13 12 17 17 N 1.47582 * 86.24127 * 336.33859 * 16 15 13 18 18 C 1.36940 * 134.49232 * 204.69774 * 17 16 15 19 19 H 1.07998 * 119.99825 * 187.12963 * 18 17 16 20 20 C 1.38815 * 119.99768 * 7.12199 * 18 17 16 21 21 N 1.31617 * 120.00195 * 0.02562 * 20 18 17 22 22 Si 1.86806 * 119.99624 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.46891 * 90.00237 * 22 20 18 24 24 H 1.48496 * 109.46852 * 210.00027 * 22 20 18 25 25 H 1.48498 * 109.47076 * 330.00120 * 22 20 18 26 26 S 1.70617 * 124.52499 * 299.97866 * 4 2 1 27 27 H 1.09001 * 109.47516 * 299.99965 * 1 2 3 28 28 H 1.09001 * 109.47556 * 59.99987 * 1 2 3 29 29 H 1.09004 * 109.46978 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47067 * 240.00286 * 2 1 3 31 31 H 1.08996 * 109.47858 * 180.02562 * 3 2 1 32 32 H 1.09005 * 109.47390 * 300.00336 * 3 2 1 33 33 H 1.09003 * 109.47406 * 59.99661 * 3 2 1 34 34 H 1.07998 * 122.45119 * 359.97438 * 5 4 2 35 35 H 1.08003 * 123.34661 * 180.28903 * 6 5 4 36 36 H 1.09004 * 109.46860 * 276.18648 * 11 10 8 37 37 H 1.09004 * 109.46992 * 36.17869 * 11 10 8 38 38 H 1.08992 * 109.47225 * 156.18476 * 11 10 8 39 39 H 1.09000 * 109.46486 * 337.32602 * 12 10 8 40 40 H 1.09002 * 109.46673 * 217.33489 * 12 10 8 41 41 H 1.08996 * 113.74058 * 23.56486 * 15 13 12 42 42 H 1.08999 * 113.74164 * 252.25600 * 15 13 12 43 43 H 1.09002 * 113.77193 * 90.70052 * 16 15 13 44 44 H 1.09005 * 113.76826 * 221.98633 * 16 15 13 45 45 H 0.97004 * 119.99470 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 6 2.8049 -1.8029 1.2130 6 6 3.1561 -2.2884 2.4503 7 6 2.6354 -1.5618 3.4838 8 6 2.8361 -1.8446 4.9080 9 8 3.6230 -2.7068 5.2522 10 7 2.1491 -1.1498 5.8363 11 6 1.1119 -0.2015 5.4225 12 6 2.4397 -1.3427 7.2592 13 6 3.3884 -0.2429 7.7398 14 1 3.0562 0.7572 7.4608 15 6 3.7899 -0.3729 9.2203 16 6 5.2132 -0.0053 8.7629 17 7 4.8114 -0.5077 7.4346 18 6 5.4858 -1.0152 6.3563 19 1 4.9592 -1.2132 5.4344 20 6 6.8463 -1.2751 6.4482 21 7 7.4880 -1.0342 7.5718 22 14 7.7664 -1.9669 4.9769 23 1 8.2882 -0.8496 4.1495 24 1 8.8986 -2.8034 5.4498 25 1 6.8438 -2.7975 4.1620 26 16 1.6925 -0.2288 2.8316 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8932 -0.5138 -0.8900 31 1 3.1299 1.4426 -0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6766 1.9564 0.8900 34 1 3.1323 -2.2665 0.2942 35 1 3.7787 -3.1596 2.5914 36 1 1.5724 0.7543 5.1724 37 1 0.5895 -0.5926 4.5494 38 1 0.4023 -0.0607 6.2377 39 1 2.9079 -2.3161 7.4057 40 1 1.5116 -1.2966 7.8290 41 1 3.7026 -1.3865 9.6112 42 1 3.3301 0.3744 9.8669 43 1 5.4189 1.0649 8.7842 44 1 5.9944 -0.5981 9.2388 45 1 8.4387 -1.2162 7.6360 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085992420.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:28:55 Heat of formation + Delta-G solvation = 59.494499 kcal Electronic energy + Delta-G solvation = -25917.037572 eV Core-core repulsion = 22449.568635 eV Total energy + Delta-G solvation = -3467.468937 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.57515 -38.18750 -37.43119 -35.15345 -34.93926 -31.94843 -29.72726 -27.99833 -27.64777 -27.40706 -26.41450 -24.56013 -23.14936 -22.44165 -21.32720 -20.30773 -18.95480 -18.43606 -17.54812 -16.72422 -16.06825 -15.46274 -15.27945 -14.88533 -14.56315 -14.52207 -13.95515 -13.72480 -13.62285 -13.52065 -13.05127 -12.91022 -12.77076 -12.62742 -12.49996 -12.10911 -11.83541 -11.48956 -11.43514 -11.36904 -11.30111 -11.27343 -10.95985 -10.78433 -10.55979 -10.40149 -10.33719 -9.88512 -9.55872 -9.41713 -9.12113 -8.58725 -8.43003 -8.39823 -8.03973 -6.63764 -5.51285 -2.81823 0.73909 1.64474 2.08879 2.62180 3.36114 3.54889 3.59917 3.68353 3.72573 4.45616 4.64666 4.68529 4.87184 4.90055 5.11278 5.21573 5.27546 5.35217 5.40550 5.47744 5.53720 5.56767 5.63264 5.66946 5.67658 5.72396 5.79025 5.87317 5.95055 6.00170 6.00643 6.05778 6.17448 6.33422 6.41328 6.47604 6.54891 6.75191 6.81167 6.99083 7.41076 7.57791 7.77888 7.85820 8.25927 8.71380 9.32483 9.97780 10.81690 11.65208 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.014109 B = 0.004741 C = 0.003971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1984.135632 B = 5904.962203 C = 7049.892015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.025 4.025 3 C -0.148 4.148 4 C -0.222 4.222 5 C -0.150 4.150 6 C -0.063 4.063 7 C -0.251 4.251 8 C 0.578 3.422 9 O -0.485 6.485 10 N -0.610 5.610 11 C 0.066 3.934 12 C 0.118 3.882 13 C 0.122 3.878 14 H 0.042 0.958 15 C -0.157 4.157 16 C 0.150 3.850 17 N -0.596 5.596 18 C -0.193 4.193 19 H 0.090 0.910 20 C -0.013 4.013 21 N -0.929 5.929 22 Si 0.899 3.101 23 H -0.295 1.295 24 H -0.293 1.293 25 H -0.275 1.275 26 S 0.213 5.787 27 H 0.057 0.943 28 H 0.061 0.939 29 H 0.059 0.941 30 H 0.083 0.917 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.058 0.942 34 H 0.135 0.865 35 H 0.149 0.851 36 H 0.060 0.940 37 H 0.071 0.929 38 H 0.085 0.915 39 H 0.096 0.904 40 H 0.067 0.933 41 H 0.075 0.925 42 H 0.049 0.951 43 H 0.020 0.980 44 H 0.080 0.920 45 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.282 4.080 -10.693 21.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.045 4.045 3 C -0.206 4.206 4 C -0.341 4.341 5 C -0.180 4.180 6 C -0.095 4.095 7 C -0.371 4.371 8 C 0.365 3.635 9 O -0.359 6.359 10 N -0.344 5.344 11 C -0.079 4.079 12 C -0.005 4.005 13 C 0.014 3.986 14 H 0.060 0.940 15 C -0.196 4.196 16 C 0.025 3.975 17 N -0.322 5.322 18 C -0.320 4.320 19 H 0.107 0.893 20 C -0.208 4.208 21 N -0.578 5.578 22 Si 0.730 3.270 23 H -0.223 1.223 24 H -0.219 1.219 25 H -0.200 1.200 26 S 0.482 5.518 27 H 0.076 0.924 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.102 0.898 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.077 0.923 34 H 0.153 0.847 35 H 0.167 0.833 36 H 0.078 0.922 37 H 0.089 0.911 38 H 0.104 0.896 39 H 0.114 0.886 40 H 0.085 0.915 41 H 0.093 0.907 42 H 0.068 0.932 43 H 0.037 0.963 44 H 0.098 0.902 45 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -18.391 4.642 -10.071 21.475 hybrid contribution 1.579 -1.287 -1.653 2.623 sum -16.812 3.355 -11.724 20.768 Atomic orbital electron populations 1.21918 0.94111 1.02277 1.02098 1.19689 0.95694 0.95582 0.93549 1.21935 1.01847 0.94733 1.02095 1.24699 1.05276 1.01884 1.02210 1.19892 1.01798 0.97782 0.98562 1.20710 0.98152 1.00260 0.90426 1.24780 1.10807 1.03558 0.97991 1.16836 0.81008 0.82465 0.83218 1.90942 1.33335 1.31261 1.80408 1.47484 1.37497 1.42245 1.07186 1.21877 0.91653 0.93650 1.00752 1.21975 0.98184 1.02164 0.78167 1.22733 0.87843 0.95229 0.92783 0.94030 1.23770 1.00204 1.00659 0.94962 1.22301 0.93460 0.96036 0.85727 1.46097 0.99660 1.71154 1.15277 1.19360 0.90778 1.31295 0.90597 0.89263 1.24687 0.96717 1.02316 0.97098 1.69818 1.08320 1.54963 1.24732 0.86248 0.79522 0.78714 0.82477 1.22305 1.21933 1.20037 1.83236 1.46921 1.27912 0.93711 0.92385 0.92037 0.92233 0.89836 0.92053 0.92026 0.92317 0.84717 0.83294 0.92160 0.91088 0.89621 0.88607 0.91510 0.90683 0.93235 0.96262 0.90190 0.94237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.08 37.15 0.34 -0.79 16 2 C -0.03 -0.23 3.25 -91.78 -0.30 -0.53 16 3 C -0.15 -1.30 9.08 37.16 0.34 -0.97 16 4 C -0.22 -2.70 4.95 -35.86 -0.18 -2.87 16 5 C -0.15 -2.02 9.95 -41.41 -0.41 -2.44 16 6 C -0.06 -1.04 10.02 -40.43 -0.41 -1.45 16 7 C -0.25 -4.34 6.19 -36.79 -0.23 -4.57 16 8 C 0.58 11.76 6.05 -12.90 -0.08 11.69 16 9 O -0.48 -12.06 13.71 5.18 0.07 -11.99 16 10 N -0.61 -10.63 2.88 -183.16 -0.53 -11.16 16 11 C 0.07 0.82 8.85 59.85 0.53 1.35 16 12 C 0.12 2.14 5.43 -4.04 -0.02 2.11 16 13 C 0.12 2.49 4.54 -66.68 -0.30 2.19 16 14 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 15 C -0.16 -3.00 7.86 -25.79 -0.20 -3.20 16 16 C 0.15 3.67 7.70 -2.97 -0.02 3.64 16 17 N -0.60 -15.75 3.58 -169.64 -0.61 -16.36 16 18 C -0.19 -5.71 9.40 -15.06 -0.14 -5.85 16 19 H 0.09 2.65 4.34 -52.49 -0.23 2.43 16 20 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 21 N -0.93 -29.29 11.27 55.49 0.63 -28.66 16 22 Si 0.90 24.57 29.55 -169.99 -5.02 19.55 16 23 H -0.30 -7.97 7.11 56.52 0.40 -7.56 16 24 H -0.29 -7.98 7.11 56.52 0.40 -7.58 16 25 H -0.28 -7.51 7.11 56.52 0.40 -7.11 16 26 S 0.21 2.71 17.13 -107.50 -1.84 0.87 16 27 H 0.06 0.44 7.90 -51.93 -0.41 0.03 16 28 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.08 0.71 8.07 -51.93 -0.42 0.29 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.06 0.52 7.90 -51.93 -0.41 0.11 16 34 H 0.14 1.53 8.06 -52.49 -0.42 1.10 16 35 H 0.15 2.56 8.06 -52.48 -0.42 2.13 16 36 H 0.06 0.74 7.47 -51.93 -0.39 0.36 16 37 H 0.07 0.79 5.17 -28.10 -0.15 0.64 16 38 H 0.09 0.81 7.91 -51.93 -0.41 0.40 16 39 H 0.10 2.06 7.16 -51.93 -0.37 1.68 16 40 H 0.07 0.93 7.98 -51.93 -0.41 0.52 16 41 H 0.07 1.41 8.10 -51.93 -0.42 0.99 16 42 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 44 H 0.08 2.18 6.85 -51.93 -0.36 1.83 16 45 H 0.25 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 367.56 15.07 5.54 5.54 Total: -1.00 -35.95 367.56 -9.86 -45.81 By element: Atomic # 1 Polarization: 5.49 SS G_CDS: -6.91 Total: -1.42 kcal Atomic # 6 Polarization: -1.00 SS G_CDS: -1.18 Total: -2.19 kcal Atomic # 7 Polarization: -55.67 SS G_CDS: -0.51 Total: -56.18 kcal Atomic # 8 Polarization: -12.06 SS G_CDS: 0.07 Total: -11.99 kcal Atomic # 14 Polarization: 24.57 SS G_CDS: -5.02 Total: 19.55 kcal Atomic # 16 Polarization: 2.71 SS G_CDS: -1.84 Total: 0.87 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -35.95 -9.86 -45.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085992420.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.307 kcal (2) G-P(sol) polarization free energy of solvation -35.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.812 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds