Wall clock time and date at job start Tue Mar 31 2020 13:28:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52999 * 109.47134 * 2 1 4 4 C 1.50697 * 109.47351 * 119.99908 * 2 1 3 5 5 C 1.33822 * 124.51938 * 120.00317 * 4 2 1 6 6 C 1.37475 * 115.09474 * 179.70788 * 5 4 2 7 7 C 1.36647 * 113.30136 * 0.49130 * 6 5 4 8 8 C 1.46580 * 125.46114 * 179.80224 * 7 6 5 9 9 O 1.21704 * 119.99536 * 7.57545 * 8 7 6 10 10 N 1.34769 * 120.00400 * 187.57610 * 8 7 6 11 11 C 1.46506 * 119.99872 * 5.73736 * 10 8 7 12 12 C 1.46502 * 120.00407 * 185.74290 * 10 8 7 13 13 C 1.52995 * 109.47525 * 97.32892 * 12 10 8 14 14 H 1.09007 * 112.96012 * 49.84233 * 13 12 10 15 15 C 1.53943 * 113.77076 * 181.51883 * 13 12 10 16 16 C 1.53946 * 86.28771 * 137.91100 * 15 13 12 17 17 N 1.47582 * 86.24127 * 336.33859 * 16 15 13 18 18 C 1.36940 * 134.49232 * 204.69774 * 17 16 15 19 19 H 1.07998 * 119.99825 * 187.12963 * 18 17 16 20 20 C 1.38815 * 119.99768 * 7.12199 * 18 17 16 21 21 N 1.31617 * 120.00195 * 0.02562 * 20 18 17 22 22 Si 1.86806 * 119.99624 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.46891 * 90.00237 * 22 20 18 24 24 H 1.48496 * 109.46852 * 210.00027 * 22 20 18 25 25 H 1.48498 * 109.47076 * 330.00120 * 22 20 18 26 26 S 1.70617 * 124.52499 * 299.97866 * 4 2 1 27 27 H 1.09001 * 109.47516 * 299.99965 * 1 2 3 28 28 H 1.09001 * 109.47556 * 59.99987 * 1 2 3 29 29 H 1.09004 * 109.46978 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47067 * 240.00286 * 2 1 3 31 31 H 1.08996 * 109.47858 * 180.02562 * 3 2 1 32 32 H 1.09005 * 109.47390 * 300.00336 * 3 2 1 33 33 H 1.09003 * 109.47406 * 59.99661 * 3 2 1 34 34 H 1.07998 * 122.45119 * 359.97438 * 5 4 2 35 35 H 1.08003 * 123.34661 * 180.28903 * 6 5 4 36 36 H 1.09004 * 109.46860 * 276.18648 * 11 10 8 37 37 H 1.09004 * 109.46992 * 36.17869 * 11 10 8 38 38 H 1.08992 * 109.47225 * 156.18476 * 11 10 8 39 39 H 1.09000 * 109.46486 * 337.32602 * 12 10 8 40 40 H 1.09002 * 109.46673 * 217.33489 * 12 10 8 41 41 H 1.08996 * 113.74058 * 23.56486 * 15 13 12 42 42 H 1.08999 * 113.74164 * 252.25600 * 15 13 12 43 43 H 1.09002 * 113.77193 * 90.70052 * 16 15 13 44 44 H 1.09005 * 113.76826 * 221.98633 * 16 15 13 45 45 H 0.97004 * 119.99470 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 6 2.8049 -1.8029 1.2130 6 6 3.1561 -2.2884 2.4503 7 6 2.6354 -1.5618 3.4838 8 6 2.8361 -1.8446 4.9080 9 8 3.6230 -2.7068 5.2522 10 7 2.1491 -1.1498 5.8363 11 6 1.1119 -0.2015 5.4225 12 6 2.4397 -1.3427 7.2592 13 6 3.3884 -0.2429 7.7398 14 1 3.0562 0.7572 7.4608 15 6 3.7899 -0.3729 9.2203 16 6 5.2132 -0.0053 8.7629 17 7 4.8114 -0.5077 7.4346 18 6 5.4858 -1.0152 6.3563 19 1 4.9592 -1.2132 5.4344 20 6 6.8463 -1.2751 6.4482 21 7 7.4880 -1.0342 7.5718 22 14 7.7664 -1.9669 4.9769 23 1 8.2882 -0.8496 4.1495 24 1 8.8986 -2.8034 5.4498 25 1 6.8438 -2.7975 4.1620 26 16 1.6925 -0.2288 2.8316 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8932 -0.5138 -0.8900 31 1 3.1299 1.4426 -0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6766 1.9564 0.8900 34 1 3.1323 -2.2665 0.2942 35 1 3.7787 -3.1596 2.5914 36 1 1.5724 0.7543 5.1724 37 1 0.5895 -0.5926 4.5494 38 1 0.4023 -0.0607 6.2377 39 1 2.9079 -2.3161 7.4057 40 1 1.5116 -1.2966 7.8290 41 1 3.7026 -1.3865 9.6112 42 1 3.3301 0.3744 9.8669 43 1 5.4189 1.0649 8.7842 44 1 5.9944 -0.5981 9.2388 45 1 8.4387 -1.2162 7.6360 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085992420.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:28:55 Heat of formation + Delta-G solvation = 36.529914 kcal Electronic energy + Delta-G solvation = -25918.033391 eV Core-core repulsion = 22449.568635 eV Total energy + Delta-G solvation = -3468.464756 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.05420 -39.50818 -38.90751 -36.47488 -35.98895 -34.13679 -31.05163 -29.77640 -29.18005 -28.02233 -27.64585 -25.79598 -25.21335 -23.94755 -22.18964 -21.59730 -20.78944 -19.62176 -18.89160 -18.65378 -17.36302 -17.01850 -16.61864 -16.45702 -15.99871 -15.75084 -15.34731 -15.27242 -14.83070 -14.57574 -14.46534 -14.14443 -14.10571 -13.83386 -13.41047 -13.39907 -13.12396 -12.98017 -12.92969 -12.90329 -12.61821 -12.44027 -12.35275 -12.25374 -12.07189 -12.02497 -11.78077 -11.43325 -11.32406 -11.25331 -10.93236 -10.68584 -9.79122 -9.51721 -9.30627 -8.73789 -7.80133 -5.08730 -0.44844 0.51203 1.00257 1.31272 1.34599 1.43752 1.47238 2.04096 2.30593 2.50267 3.36779 3.43860 3.60960 3.71722 3.99541 4.00117 4.15832 4.22825 4.28565 4.32751 4.39890 4.45618 4.49861 4.59477 4.64481 4.75325 4.77949 4.77963 4.83671 4.94304 4.96533 5.06445 5.09436 5.10437 5.16383 5.25559 5.33746 5.36980 5.43238 5.44423 5.59215 5.73332 5.82473 6.08880 6.41336 7.07096 7.26322 7.74879 8.66616 9.36219 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.014109 B = 0.004741 C = 0.003971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1984.135632 B = 5904.962203 C = 7049.892015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.027 4.027 3 C -0.150 4.150 4 C -0.209 4.209 5 C -0.167 4.167 6 C -0.073 4.073 7 C -0.303 4.303 8 C 0.569 3.431 9 O -0.552 6.552 10 N -0.610 5.610 11 C 0.057 3.943 12 C 0.122 3.878 13 C 0.124 3.876 14 H 0.064 0.936 15 C -0.125 4.125 16 C 0.138 3.862 17 N -0.630 5.630 18 C -0.177 4.177 19 H 0.085 0.915 20 C -0.079 4.079 21 N -0.960 5.960 22 Si 0.946 3.054 23 H -0.289 1.289 24 H -0.294 1.294 25 H -0.283 1.283 26 S 0.285 5.715 27 H 0.060 0.940 28 H 0.081 0.919 29 H 0.057 0.943 30 H 0.095 0.905 31 H 0.047 0.953 32 H 0.084 0.916 33 H 0.058 0.942 34 H 0.154 0.846 35 H 0.125 0.875 36 H 0.065 0.935 37 H 0.083 0.917 38 H 0.126 0.874 39 H 0.054 0.946 40 H 0.122 0.878 41 H 0.076 0.924 42 H 0.098 0.902 43 H 0.018 0.982 44 H 0.041 0.959 45 H 0.239 0.761 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.212 6.432 -12.000 26.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.047 4.047 3 C -0.207 4.207 4 C -0.328 4.328 5 C -0.196 4.196 6 C -0.108 4.108 7 C -0.423 4.423 8 C 0.358 3.642 9 O -0.432 6.432 10 N -0.342 5.342 11 C -0.086 4.086 12 C -0.001 4.001 13 C 0.018 3.982 14 H 0.081 0.919 15 C -0.164 4.164 16 C 0.013 3.987 17 N -0.356 5.356 18 C -0.306 4.306 19 H 0.102 0.898 20 C -0.270 4.270 21 N -0.612 5.612 22 Si 0.777 3.223 23 H -0.217 1.217 24 H -0.220 1.220 25 H -0.209 1.209 26 S 0.554 5.446 27 H 0.079 0.921 28 H 0.100 0.900 29 H 0.076 0.924 30 H 0.113 0.887 31 H 0.066 0.934 32 H 0.103 0.897 33 H 0.077 0.923 34 H 0.172 0.828 35 H 0.143 0.857 36 H 0.083 0.917 37 H 0.101 0.899 38 H 0.144 0.856 39 H 0.073 0.927 40 H 0.140 0.860 41 H 0.094 0.906 42 H 0.116 0.884 43 H 0.035 0.965 44 H 0.059 0.941 45 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -22.403 7.043 -11.378 26.095 hybrid contribution 2.599 -1.930 -1.332 3.501 sum -19.804 5.113 -12.710 24.081 Atomic orbital electron populations 1.21931 0.92425 1.02609 1.03314 1.19878 0.96988 0.95613 0.92251 1.21967 1.01057 0.94403 1.03308 1.25271 1.03120 1.00783 1.03604 1.19976 1.02844 0.98764 0.97997 1.20802 0.98071 0.99878 0.92004 1.24713 1.14040 1.06809 0.96748 1.17394 0.80177 0.81770 0.84838 1.90890 1.36342 1.34215 1.81743 1.47626 1.37717 1.42322 1.06525 1.22242 0.91036 0.92423 1.02933 1.21856 0.99786 0.99027 0.79415 1.23007 0.85230 0.96620 0.93348 0.91895 1.23497 0.95836 1.02000 0.95022 1.22312 0.95860 0.95128 0.85449 1.46501 1.02933 1.71204 1.14936 1.19571 0.90795 1.28872 0.91347 0.89791 1.25303 0.97967 1.04587 0.99157 1.69978 1.07782 1.57482 1.25986 0.85490 0.78278 0.78124 0.80372 1.21656 1.22048 1.20903 1.82759 1.44353 1.24573 0.92884 0.92107 0.89989 0.92376 0.88710 0.93376 0.89737 0.92301 0.82832 0.85672 0.91692 0.89891 0.85589 0.92750 0.86016 0.90579 0.88421 0.96456 0.94061 0.95173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 9.08 71.98 0.65 -0.98 16 2 C -0.03 -0.41 3.25 -11.54 -0.04 -0.44 16 3 C -0.15 -2.10 9.08 71.98 0.65 -1.45 16 4 C -0.21 -4.58 4.95 24.68 0.12 -4.46 16 5 C -0.17 -4.37 9.95 21.09 0.21 -4.16 16 6 C -0.07 -2.52 10.02 21.72 0.22 -2.30 16 7 C -0.30 -10.56 6.19 24.08 0.15 -10.42 16 8 C 0.57 23.69 6.05 86.42 0.52 24.22 16 9 O -0.55 -29.15 13.71 -4.36 -0.06 -29.21 16 10 N -0.61 -20.32 2.88 -851.61 -2.45 -22.77 16 11 C 0.06 1.19 8.85 127.77 1.13 2.32 16 12 C 0.12 4.19 5.43 86.38 0.47 4.65 16 13 C 0.12 4.80 4.54 45.02 0.20 5.00 16 14 H 0.06 2.24 8.14 -2.38 -0.02 2.22 16 15 C -0.12 -4.47 7.86 31.25 0.25 -4.22 16 16 C 0.14 6.80 7.70 86.48 0.67 7.47 16 17 N -0.63 -33.68 3.58 -690.60 -2.47 -36.16 16 18 C -0.18 -10.82 9.40 84.03 0.79 -10.03 16 19 H 0.08 5.20 4.34 -2.91 -0.01 5.19 16 20 C -0.08 -5.08 5.50 84.86 0.47 -4.61 16 21 N -0.96 -63.35 11.27 21.65 0.24 -63.11 16 22 Si 0.95 53.08 29.55 68.60 2.03 55.11 16 23 H -0.29 -15.65 7.11 99.48 0.71 -14.94 16 24 H -0.29 -16.31 7.11 99.48 0.71 -15.60 16 25 H -0.28 -16.03 7.11 99.48 0.71 -15.33 16 26 S 0.28 6.53 17.13 -56.49 -0.97 5.57 16 27 H 0.06 0.66 7.90 -2.39 -0.02 0.64 16 28 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.09 1.27 8.07 -2.39 -0.02 1.26 16 31 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.08 0.83 8.14 -2.38 -0.02 0.81 16 33 H 0.06 0.82 7.90 -2.39 -0.02 0.80 16 34 H 0.15 3.32 8.06 -2.91 -0.02 3.29 16 35 H 0.13 4.73 8.06 -2.91 -0.02 4.71 16 36 H 0.06 1.34 7.47 -2.39 -0.02 1.32 16 37 H 0.08 1.54 5.17 -17.54 -0.09 1.45 16 38 H 0.13 1.65 7.91 -2.39 -0.02 1.63 16 39 H 0.05 2.36 7.16 -2.39 -0.02 2.34 16 40 H 0.12 2.83 7.98 -2.39 -0.02 2.81 16 41 H 0.08 2.73 8.10 -2.39 -0.02 2.71 16 42 H 0.10 2.63 8.14 -2.39 -0.02 2.61 16 43 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 44 H 0.04 2.34 6.85 -2.38 -0.02 2.33 16 45 H 0.24 15.49 8.31 -92.71 -0.77 14.72 16 Total: -1.00 -85.78 367.56 3.68 -82.10 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: 0.90 Total: 7.89 kcal Atomic # 6 Polarization: -5.89 SS G_CDS: 6.46 Total: 0.58 kcal Atomic # 7 Polarization: -117.35 SS G_CDS: -4.68 Total: -122.04 kcal Atomic # 8 Polarization: -29.15 SS G_CDS: -0.06 Total: -29.21 kcal Atomic # 14 Polarization: 53.08 SS G_CDS: 2.03 Total: 55.11 kcal Atomic # 16 Polarization: 6.53 SS G_CDS: -0.97 Total: 5.57 kcal Total: -85.78 3.68 -82.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085992420.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.631 kcal (2) G-P(sol) polarization free energy of solvation -85.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.101 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds