Wall clock time and date at job start Tue Mar 31 2020 13:28:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47298 * 2 1 4 4 C 1.50705 * 109.46977 * 119.99851 * 2 1 3 5 5 C 1.33818 * 124.52079 * 119.99917 * 4 2 1 6 6 C 1.37462 * 115.10172 * 179.97438 * 5 4 2 7 7 C 1.36652 * 113.29881 * 0.02562 * 6 5 4 8 8 C 1.46586 * 125.46151 * 179.97438 * 7 6 5 9 9 O 1.21702 * 119.99947 * 354.47955 * 8 7 6 10 10 N 1.34773 * 120.00074 * 174.48040 * 8 7 6 11 11 C 1.46501 * 119.99865 * 5.25811 * 10 8 7 12 12 C 1.46495 * 119.99956 * 185.26080 * 10 8 7 13 13 C 1.53003 * 109.47310 * 84.12490 * 12 10 8 14 14 H 1.08998 * 112.96334 * 311.03606 * 13 12 10 15 15 C 1.53942 * 113.76934 * 179.35580 * 13 12 10 16 16 C 1.53946 * 86.29218 * 222.09376 * 15 13 12 17 17 N 1.47584 * 113.76882 * 82.71589 * 13 12 10 18 18 C 1.36937 * 134.48831 * 318.92910 * 17 13 12 19 19 H 1.07996 * 120.00238 * 3.52061 * 18 17 13 20 20 C 1.38818 * 119.99713 * 183.52611 * 18 17 13 21 21 N 1.31613 * 119.99808 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 120.00000 * 180.02562 * 20 18 17 23 23 H 1.48505 * 109.46775 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.46870 * 119.99336 * 22 20 18 25 25 H 1.48491 * 109.47062 * 239.99857 * 22 20 18 26 26 S 1.70612 * 124.52391 * 299.69684 * 4 2 1 27 27 H 1.08995 * 109.47387 * 60.00186 * 1 2 3 28 28 H 1.09002 * 109.47277 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.46810 * 299.99993 * 1 2 3 30 30 H 1.09003 * 109.46840 * 239.99499 * 2 1 3 31 31 H 1.08996 * 109.47102 * 59.99481 * 3 2 1 32 32 H 1.08992 * 109.47128 * 180.02562 * 3 2 1 33 33 H 1.09004 * 109.46906 * 300.00036 * 3 2 1 34 34 H 1.08001 * 122.44630 * 359.93878 * 5 4 2 35 35 H 1.08004 * 123.35581 * 179.97438 * 6 5 4 36 36 H 1.08998 * 109.47248 * 57.17375 * 11 10 8 37 37 H 1.09003 * 109.47112 * 177.17111 * 11 10 8 38 38 H 1.09000 * 109.47577 * 297.17146 * 11 10 8 39 39 H 1.09008 * 109.47193 * 204.12567 * 12 10 8 40 40 H 1.08999 * 109.46915 * 324.12313 * 12 10 8 41 41 H 1.09006 * 113.74588 * 336.43711 * 15 13 12 42 42 H 1.08996 * 113.74686 * 107.63594 * 15 13 12 43 43 H 1.09001 * 113.77162 * 137.91006 * 16 15 13 44 44 H 1.09001 * 113.76779 * 269.19455 * 16 15 13 45 45 H 0.97001 * 119.99659 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 2.8048 -1.8030 1.2132 6 6 3.1512 -2.2919 2.4504 7 6 2.6350 -1.5620 3.4839 8 6 2.8352 -1.8451 4.9082 9 8 3.4240 -2.8534 5.2513 10 7 2.3671 -0.9888 5.8377 11 6 1.5594 0.1638 5.4312 12 6 2.6660 -1.2106 7.2546 13 6 4.0379 -0.6193 7.5851 14 1 4.8119 -0.9201 6.8790 15 6 4.4457 -0.7845 9.0603 16 6 4.9604 0.6640 8.9763 17 7 4.0109 0.8312 7.8559 18 6 3.3649 1.9003 7.2948 19 1 2.6576 1.7442 6.4937 20 6 3.6193 3.1848 7.7556 21 7 4.4810 3.3750 8.7321 22 14 2.7376 4.6432 6.9906 23 1 1.8266 4.1648 5.9198 24 1 1.9494 5.3477 8.0335 25 1 3.7362 5.5763 6.4100 26 16 1.6981 -0.2248 2.8316 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8901 30 1 1.8933 -0.5139 -0.8900 31 1 1.6767 1.9563 0.8899 32 1 3.1300 1.4424 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 3.1317 -2.2670 0.2944 35 1 3.7691 -3.1664 2.5916 36 1 0.6883 -0.1812 4.8742 37 1 1.2320 0.7086 6.3167 38 1 2.1568 0.8218 4.8001 39 1 1.9048 -0.7267 7.8666 40 1 2.6722 -2.2808 7.4613 41 1 3.6011 -0.9114 9.7376 42 1 5.2317 -1.5229 9.2184 43 1 4.7196 1.2673 9.8515 44 1 6.0067 0.7419 8.6807 45 1 4.6584 4.2725 9.0543 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085992421.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:28:59 Heat of formation + Delta-G solvation = 50.562591 kcal Electronic energy + Delta-G solvation = -25559.901206 eV Core-core repulsion = 22092.044953 eV Total energy + Delta-G solvation = -3467.856253 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.71666 -38.28395 -37.59335 -35.19513 -35.02302 -32.25127 -29.82215 -28.28127 -27.62847 -27.40995 -26.46701 -24.62914 -23.31328 -22.56383 -21.38660 -20.39793 -19.07167 -18.56211 -17.58111 -16.81635 -16.15967 -15.61088 -15.24779 -14.97521 -14.87468 -14.56416 -14.04017 -13.88154 -13.69010 -13.53340 -13.05618 -12.91057 -12.80183 -12.68798 -12.63526 -12.18720 -11.96201 -11.53658 -11.46706 -11.41230 -11.33006 -11.29587 -11.10596 -10.97078 -10.72406 -10.54522 -10.32507 -10.04781 -9.67880 -9.60962 -9.34326 -8.79085 -8.67366 -8.50949 -8.12450 -6.83661 -5.76000 -3.06455 0.62224 1.57490 2.04128 2.47187 3.24527 3.35005 3.37102 3.43121 3.47605 4.41752 4.42918 4.66609 4.76224 4.88372 5.16022 5.17385 5.28984 5.36050 5.38746 5.46732 5.49687 5.53025 5.57039 5.59418 5.70149 5.75059 5.84660 5.93101 5.96404 5.99099 6.02520 6.05539 6.12342 6.23779 6.27287 6.42861 6.48185 6.63165 6.74449 6.96227 7.28498 7.46151 7.59623 7.66139 7.99676 8.39823 9.04628 9.72751 10.66086 11.42003 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.012464 B = 0.004626 C = 0.003600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2245.845925 B = 6051.492208 C = 7775.512154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.026 4.026 3 C -0.150 4.150 4 C -0.221 4.221 5 C -0.155 4.155 6 C -0.060 4.060 7 C -0.263 4.263 8 C 0.586 3.414 9 O -0.539 6.539 10 N -0.594 5.594 11 C 0.063 3.937 12 C 0.120 3.880 13 C 0.127 3.873 14 H 0.046 0.954 15 C -0.159 4.159 16 C 0.163 3.837 17 N -0.603 5.603 18 C -0.226 4.226 19 H 0.088 0.912 20 C -0.009 4.009 21 N -0.918 5.918 22 Si 0.900 3.100 23 H -0.278 1.278 24 H -0.290 1.290 25 H -0.291 1.291 26 S 0.235 5.765 27 H 0.062 0.938 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.084 0.916 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.062 0.938 34 H 0.135 0.865 35 H 0.148 0.852 36 H 0.059 0.941 37 H 0.110 0.890 38 H 0.073 0.927 39 H 0.086 0.914 40 H 0.078 0.922 41 H 0.074 0.926 42 H 0.052 0.948 43 H 0.068 0.932 44 H 0.025 0.975 45 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.105 -7.656 -14.212 18.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.046 4.046 3 C -0.207 4.207 4 C -0.340 4.340 5 C -0.186 4.186 6 C -0.093 4.093 7 C -0.384 4.384 8 C 0.374 3.626 9 O -0.419 6.419 10 N -0.325 5.325 11 C -0.082 4.082 12 C -0.003 4.003 13 C 0.019 3.981 14 H 0.063 0.937 15 C -0.198 4.198 16 C 0.038 3.962 17 N -0.329 5.329 18 C -0.353 4.353 19 H 0.105 0.895 20 C -0.205 4.205 21 N -0.566 5.566 22 Si 0.731 3.269 23 H -0.204 1.204 24 H -0.217 1.217 25 H -0.218 1.218 26 S 0.505 5.495 27 H 0.081 0.919 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.102 0.898 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.153 0.847 35 H 0.166 0.834 36 H 0.077 0.923 37 H 0.128 0.872 38 H 0.091 0.909 39 H 0.104 0.896 40 H 0.096 0.904 41 H 0.093 0.907 42 H 0.071 0.929 43 H 0.087 0.913 44 H 0.043 0.957 45 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -8.725 -6.633 -13.430 17.335 hybrid contribution 0.681 -0.109 -1.336 1.503 sum -8.044 -6.742 -14.766 18.116 Atomic orbital electron populations 1.21932 0.94021 1.02296 1.02290 1.19710 0.95792 0.95637 0.93435 1.21947 1.01783 0.94665 1.02345 1.24867 1.04844 1.01528 1.02757 1.19864 1.02305 0.97882 0.98518 1.20634 0.98574 0.99730 0.90357 1.24667 1.11957 1.04081 0.97664 1.16963 0.79031 0.83060 0.83583 1.90782 1.42949 1.26804 1.81317 1.47577 1.51660 1.25633 1.07639 1.22102 0.94500 0.89033 1.02577 1.22010 0.98755 1.00810 0.78692 1.22611 0.94026 0.86654 0.94800 0.93659 1.23765 1.00332 0.99371 0.96319 1.22145 0.92170 0.89716 0.92219 1.46223 1.50116 1.00719 1.35883 1.19331 1.16968 0.84274 1.14748 0.89478 1.24793 0.99449 0.97034 0.99264 1.69835 1.37115 1.20424 1.29181 0.86232 0.78796 0.83455 0.78454 1.20367 1.21749 1.21836 1.83726 1.47102 1.25521 0.93160 0.91935 0.92233 0.92277 0.89821 0.92160 0.92063 0.91928 0.84723 0.83401 0.92317 0.87167 0.90947 0.89595 0.90404 0.90706 0.92905 0.91326 0.95705 0.93813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.09 37.16 0.34 -0.84 16 2 C -0.03 -0.23 3.25 -91.77 -0.30 -0.53 16 3 C -0.15 -1.34 9.08 37.16 0.34 -1.00 16 4 C -0.22 -2.54 4.95 -35.86 -0.18 -2.72 16 5 C -0.16 -1.85 9.95 -41.42 -0.41 -2.26 16 6 C -0.06 -0.84 10.02 -40.44 -0.41 -1.24 16 7 C -0.26 -4.13 6.33 -36.79 -0.23 -4.37 16 8 C 0.59 10.76 7.59 -12.90 -0.10 10.66 16 9 O -0.54 -11.22 16.49 5.19 0.09 -11.13 16 10 N -0.59 -10.52 2.89 -183.16 -0.53 -11.05 16 11 C 0.06 0.98 6.98 59.85 0.42 1.40 16 12 C 0.12 2.19 5.26 -4.04 -0.02 2.16 16 13 C 0.13 2.66 4.49 -66.86 -0.30 2.36 16 14 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 15 C -0.16 -3.05 7.86 -25.80 -0.20 -3.26 16 16 C 0.16 3.85 7.44 -2.85 -0.02 3.83 16 17 N -0.60 -14.92 3.58 -169.74 -0.61 -15.52 16 18 C -0.23 -5.89 10.31 -15.06 -0.16 -6.05 16 19 H 0.09 2.08 3.77 -52.49 -0.20 1.88 16 20 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 21 N -0.92 -26.82 11.49 55.49 0.64 -26.18 16 22 Si 0.90 21.20 29.55 -169.99 -5.02 16.18 16 23 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 24 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 25 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 26 S 0.24 3.02 16.79 -107.50 -1.80 1.21 16 27 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.49 7.91 -51.92 -0.41 0.08 16 30 H 0.08 0.67 8.07 -51.93 -0.42 0.25 16 31 H 0.06 0.58 7.89 -51.93 -0.41 0.17 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 34 H 0.13 1.30 8.06 -52.49 -0.42 0.87 16 35 H 0.15 2.00 8.06 -52.48 -0.42 1.58 16 36 H 0.06 0.76 6.44 -43.55 -0.28 0.48 16 37 H 0.11 1.79 6.40 -51.93 -0.33 1.46 16 38 H 0.07 1.19 5.94 -43.27 -0.26 0.94 16 39 H 0.09 1.52 7.78 -51.92 -0.40 1.11 16 40 H 0.08 1.35 7.53 -51.93 -0.39 0.96 16 41 H 0.07 1.34 8.10 -51.93 -0.42 0.92 16 42 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 43 H 0.07 1.76 7.34 -51.93 -0.38 1.38 16 44 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 45 H 0.25 7.16 8.31 -40.82 -0.34 6.83 16 LS Contribution 368.79 15.07 5.56 5.56 Total: -1.00 -31.69 368.79 -9.86 -41.55 By element: Atomic # 1 Polarization: 8.40 SS G_CDS: -6.84 Total: 1.55 kcal Atomic # 6 Polarization: -0.85 SS G_CDS: -1.33 Total: -2.17 kcal Atomic # 7 Polarization: -52.25 SS G_CDS: -0.50 Total: -52.75 kcal Atomic # 8 Polarization: -11.22 SS G_CDS: 0.09 Total: -11.13 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Atomic # 16 Polarization: 3.02 SS G_CDS: -1.80 Total: 1.21 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -31.69 -9.86 -41.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085992421.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.112 kcal (2) G-P(sol) polarization free energy of solvation -31.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.550 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds