Wall clock time and date at job start Tue Mar 31 2020 13:28:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47298 * 2 1 4 4 C 1.50705 * 109.46977 * 119.99851 * 2 1 3 5 5 C 1.33818 * 124.52079 * 119.99917 * 4 2 1 6 6 C 1.37462 * 115.10172 * 179.97438 * 5 4 2 7 7 C 1.36652 * 113.29881 * 0.02562 * 6 5 4 8 8 C 1.46586 * 125.46151 * 179.97438 * 7 6 5 9 9 O 1.21702 * 119.99947 * 354.47955 * 8 7 6 10 10 N 1.34773 * 120.00074 * 174.48040 * 8 7 6 11 11 C 1.46501 * 119.99865 * 5.25811 * 10 8 7 12 12 C 1.46495 * 119.99956 * 185.26080 * 10 8 7 13 13 C 1.53003 * 109.47310 * 84.12490 * 12 10 8 14 14 H 1.08998 * 112.96334 * 311.03606 * 13 12 10 15 15 C 1.53942 * 113.76934 * 179.35580 * 13 12 10 16 16 C 1.53946 * 86.29218 * 222.09376 * 15 13 12 17 17 N 1.47584 * 113.76882 * 82.71589 * 13 12 10 18 18 C 1.36937 * 134.48831 * 318.92910 * 17 13 12 19 19 H 1.07996 * 120.00238 * 3.52061 * 18 17 13 20 20 C 1.38818 * 119.99713 * 183.52611 * 18 17 13 21 21 N 1.31613 * 119.99808 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 120.00000 * 180.02562 * 20 18 17 23 23 H 1.48505 * 109.46775 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.46870 * 119.99336 * 22 20 18 25 25 H 1.48491 * 109.47062 * 239.99857 * 22 20 18 26 26 S 1.70612 * 124.52391 * 299.69684 * 4 2 1 27 27 H 1.08995 * 109.47387 * 60.00186 * 1 2 3 28 28 H 1.09002 * 109.47277 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.46810 * 299.99993 * 1 2 3 30 30 H 1.09003 * 109.46840 * 239.99499 * 2 1 3 31 31 H 1.08996 * 109.47102 * 59.99481 * 3 2 1 32 32 H 1.08992 * 109.47128 * 180.02562 * 3 2 1 33 33 H 1.09004 * 109.46906 * 300.00036 * 3 2 1 34 34 H 1.08001 * 122.44630 * 359.93878 * 5 4 2 35 35 H 1.08004 * 123.35581 * 179.97438 * 6 5 4 36 36 H 1.08998 * 109.47248 * 57.17375 * 11 10 8 37 37 H 1.09003 * 109.47112 * 177.17111 * 11 10 8 38 38 H 1.09000 * 109.47577 * 297.17146 * 11 10 8 39 39 H 1.09008 * 109.47193 * 204.12567 * 12 10 8 40 40 H 1.08999 * 109.46915 * 324.12313 * 12 10 8 41 41 H 1.09006 * 113.74588 * 336.43711 * 15 13 12 42 42 H 1.08996 * 113.74686 * 107.63594 * 15 13 12 43 43 H 1.09001 * 113.77162 * 137.91006 * 16 15 13 44 44 H 1.09001 * 113.76779 * 269.19455 * 16 15 13 45 45 H 0.97001 * 119.99659 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 2.8048 -1.8030 1.2132 6 6 3.1512 -2.2919 2.4504 7 6 2.6350 -1.5620 3.4839 8 6 2.8352 -1.8451 4.9082 9 8 3.4240 -2.8534 5.2513 10 7 2.3671 -0.9888 5.8377 11 6 1.5594 0.1638 5.4312 12 6 2.6660 -1.2106 7.2546 13 6 4.0379 -0.6193 7.5851 14 1 4.8119 -0.9201 6.8790 15 6 4.4457 -0.7845 9.0603 16 6 4.9604 0.6640 8.9763 17 7 4.0109 0.8312 7.8559 18 6 3.3649 1.9003 7.2948 19 1 2.6576 1.7442 6.4937 20 6 3.6193 3.1848 7.7556 21 7 4.4810 3.3750 8.7321 22 14 2.7376 4.6432 6.9906 23 1 1.8266 4.1648 5.9198 24 1 1.9494 5.3477 8.0335 25 1 3.7362 5.5763 6.4100 26 16 1.6981 -0.2248 2.8316 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8901 30 1 1.8933 -0.5139 -0.8900 31 1 1.6767 1.9563 0.8899 32 1 3.1300 1.4424 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 3.1317 -2.2670 0.2944 35 1 3.7691 -3.1664 2.5916 36 1 0.6883 -0.1812 4.8742 37 1 1.2320 0.7086 6.3167 38 1 2.1568 0.8218 4.8001 39 1 1.9048 -0.7267 7.8666 40 1 2.6722 -2.2808 7.4613 41 1 3.6011 -0.9114 9.7376 42 1 5.2317 -1.5229 9.2184 43 1 4.7196 1.2673 9.8515 44 1 6.0067 0.7419 8.6807 45 1 4.6584 4.2725 9.0543 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085992421.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:28:59 Heat of formation + Delta-G solvation = 32.947751 kcal Electronic energy + Delta-G solvation = -25560.665043 eV Core-core repulsion = 22092.044953 eV Total energy + Delta-G solvation = -3468.620090 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.12567 -39.60449 -38.95800 -36.49695 -35.99806 -34.25029 -31.12738 -29.95140 -29.15090 -28.04189 -27.79078 -25.81196 -25.24469 -24.03966 -22.22666 -21.62634 -20.86580 -19.68008 -18.91730 -18.58122 -17.45860 -16.96770 -16.65534 -16.58561 -16.15520 -15.66478 -15.36227 -15.31170 -14.73649 -14.69223 -14.55390 -14.20231 -14.15895 -13.91534 -13.46919 -13.34956 -13.10909 -13.02274 -12.94927 -12.90873 -12.67148 -12.49011 -12.29234 -12.18747 -12.07942 -12.04158 -11.81506 -11.46557 -11.31972 -11.17764 -11.05719 -10.81196 -9.92071 -9.56583 -9.34591 -8.84810 -7.82492 -5.14489 -0.45946 0.52410 1.03799 1.39809 1.46928 1.48718 1.57587 1.91929 2.19068 2.50992 3.33929 3.43598 3.54192 3.64576 3.95886 3.98792 4.08796 4.20734 4.22139 4.31313 4.35332 4.43297 4.46735 4.55866 4.64498 4.67964 4.75542 4.75736 4.84153 4.86579 4.95095 4.98302 5.05286 5.08254 5.10089 5.23804 5.34007 5.34425 5.35648 5.44265 5.47044 5.62883 5.71186 5.98294 6.28974 6.98044 7.01581 7.70018 8.66720 9.36318 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.012464 B = 0.004626 C = 0.003600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2245.845925 B = 6051.492208 C = 7775.512154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.026 4.026 3 C -0.151 4.151 4 C -0.206 4.206 5 C -0.163 4.163 6 C -0.055 4.055 7 C -0.306 4.306 8 C 0.581 3.419 9 O -0.575 6.575 10 N -0.600 5.600 11 C 0.063 3.937 12 C 0.128 3.872 13 C 0.128 3.872 14 H 0.023 0.977 15 C -0.131 4.131 16 C 0.154 3.846 17 N -0.623 5.623 18 C -0.222 4.222 19 H 0.109 0.891 20 C -0.074 4.074 21 N -0.959 5.959 22 Si 0.960 3.040 23 H -0.248 1.248 24 H -0.296 1.296 25 H -0.303 1.303 26 S 0.251 5.749 27 H 0.080 0.920 28 H 0.059 0.941 29 H 0.053 0.947 30 H 0.101 0.899 31 H 0.051 0.949 32 H 0.052 0.948 33 H 0.082 0.918 34 H 0.161 0.839 35 H 0.146 0.854 36 H 0.088 0.912 37 H 0.105 0.895 38 H 0.064 0.936 39 H 0.094 0.906 40 H 0.088 0.912 41 H 0.094 0.906 42 H 0.078 0.922 43 H 0.043 0.957 44 H 0.006 0.994 45 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.126 -8.057 -16.771 21.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.047 4.047 3 C -0.209 4.209 4 C -0.325 4.325 5 C -0.192 4.192 6 C -0.090 4.090 7 C -0.426 4.426 8 C 0.371 3.629 9 O -0.457 6.457 10 N -0.329 5.329 11 C -0.082 4.082 12 C 0.005 3.995 13 C 0.021 3.979 14 H 0.041 0.959 15 C -0.170 4.170 16 C 0.029 3.971 17 N -0.349 5.349 18 C -0.350 4.350 19 H 0.126 0.874 20 C -0.267 4.267 21 N -0.609 5.609 22 Si 0.789 3.211 23 H -0.171 1.171 24 H -0.223 1.223 25 H -0.231 1.231 26 S 0.521 5.479 27 H 0.099 0.901 28 H 0.078 0.922 29 H 0.072 0.928 30 H 0.119 0.881 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.101 0.899 34 H 0.179 0.821 35 H 0.164 0.836 36 H 0.106 0.894 37 H 0.123 0.877 38 H 0.082 0.918 39 H 0.112 0.888 40 H 0.106 0.894 41 H 0.112 0.888 42 H 0.097 0.903 43 H 0.061 0.939 44 H 0.024 0.976 45 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -10.782 -7.055 -16.010 20.551 hybrid contribution 1.340 -0.030 -0.661 1.495 sum -9.442 -7.085 -16.671 20.427 Atomic orbital electron populations 1.21943 0.92946 1.02597 1.03008 1.19868 0.96623 0.95517 0.92646 1.21972 1.01301 0.94644 1.02965 1.25268 1.03385 1.00907 1.02986 1.20066 1.02443 0.98153 0.98579 1.20852 0.97757 0.99328 0.91039 1.24548 1.14923 1.06584 0.96558 1.17354 0.78260 0.82530 0.84755 1.90741 1.44594 1.28237 1.82167 1.47656 1.51846 1.26079 1.07360 1.22162 0.95081 0.88353 1.02560 1.21838 0.96994 1.01187 0.79488 1.22650 0.95175 0.84582 0.95466 0.95938 1.23572 1.01317 0.96700 0.95381 1.22086 0.91248 0.92556 0.91219 1.46608 1.49980 1.02125 1.36204 1.19934 1.16306 0.84656 1.14135 0.87413 1.25623 1.00909 0.99849 1.00271 1.70042 1.39482 1.20174 1.31218 0.85258 0.77806 0.79835 0.78202 1.17085 1.22293 1.23140 1.83501 1.46287 1.24172 0.93929 0.90103 0.92157 0.92775 0.88059 0.93017 0.92868 0.89926 0.82120 0.83641 0.89409 0.87691 0.91754 0.88754 0.89391 0.88752 0.90320 0.93857 0.97623 0.94812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 9.09 71.98 0.65 -1.17 16 2 C -0.03 -0.39 3.25 -11.54 -0.04 -0.42 16 3 C -0.15 -2.24 9.08 71.98 0.65 -1.59 16 4 C -0.21 -4.19 4.95 24.68 0.12 -4.06 16 5 C -0.16 -3.49 9.95 21.08 0.21 -3.28 16 6 C -0.06 -1.50 10.02 21.72 0.22 -1.28 16 7 C -0.31 -9.38 6.33 24.08 0.15 -9.23 16 8 C 0.58 21.25 7.59 86.42 0.66 21.91 16 9 O -0.57 -24.17 16.49 -4.36 -0.07 -24.24 16 10 N -0.60 -20.76 2.89 -851.61 -2.46 -23.21 16 11 C 0.06 1.86 6.98 127.77 0.89 2.75 16 12 C 0.13 4.53 5.26 86.38 0.45 4.99 16 13 C 0.13 5.36 4.49 45.09 0.20 5.56 16 14 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 15 C -0.13 -4.92 7.86 31.25 0.25 -4.68 16 16 C 0.15 7.50 7.44 86.44 0.64 8.15 16 17 N -0.62 -31.08 3.58 -690.94 -2.48 -33.56 16 18 C -0.22 -11.59 10.31 84.03 0.87 -10.73 16 19 H 0.11 5.02 3.77 -2.91 -0.01 5.01 16 20 C -0.07 -4.11 5.50 84.86 0.47 -3.65 16 21 N -0.96 -57.80 11.49 21.65 0.25 -57.55 16 22 Si 0.96 43.64 29.55 68.60 2.03 45.67 16 23 H -0.25 -9.85 7.11 99.48 0.71 -9.15 16 24 H -0.30 -13.58 7.11 99.48 0.71 -12.87 16 25 H -0.30 -14.30 7.11 99.48 0.71 -13.59 16 26 S 0.25 5.96 16.79 -56.49 -0.95 5.01 16 27 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.05 0.73 7.91 -2.38 -0.02 0.71 16 30 H 0.10 1.19 8.07 -2.39 -0.02 1.17 16 31 H 0.05 0.85 7.89 -2.39 -0.02 0.83 16 32 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.16 2.56 8.06 -2.91 -0.02 2.53 16 35 H 0.15 3.91 8.06 -2.91 -0.02 3.88 16 36 H 0.09 2.08 6.44 -7.72 -0.05 2.03 16 37 H 0.10 3.22 6.40 -2.39 -0.02 3.21 16 38 H 0.06 2.03 5.94 -7.89 -0.05 1.98 16 39 H 0.09 3.18 7.78 -2.38 -0.02 3.16 16 40 H 0.09 2.96 7.53 -2.39 -0.02 2.94 16 41 H 0.09 3.20 8.10 -2.38 -0.02 3.18 16 42 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 43 H 0.04 2.31 7.34 -2.39 -0.02 2.29 16 44 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 45 H 0.24 14.37 8.31 -92.71 -0.77 13.60 16 Total: -1.00 -70.25 368.79 3.63 -66.62 By element: Atomic # 1 Polarization: 17.08 SS G_CDS: 0.91 Total: 17.99 kcal Atomic # 6 Polarization: -3.13 SS G_CDS: 6.40 Total: 3.26 kcal Atomic # 7 Polarization: -109.63 SS G_CDS: -4.69 Total: -114.32 kcal Atomic # 8 Polarization: -24.17 SS G_CDS: -0.07 Total: -24.24 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal Atomic # 16 Polarization: 5.96 SS G_CDS: -0.95 Total: 5.01 kcal Total: -70.25 3.63 -66.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085992421.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.568 kcal (2) G-P(sol) polarization free energy of solvation -70.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.621 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds